Mark A. Kay

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “A standardized ontology for naming tRNA-derived RNAs based on molecular origin”.

A standardized ontology for naming tRNA-derived RNAs based on molecular origin

Nature Methods(2023)10.1038/s41592-023-01813-2

N/A

0.678DataRank · unranked

91 citations

Patricia P. Chan, Qi Chen, Pavel Ivanov, Laurence Drouard, Norbert Polacek +3 more

The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner

Nature Communications(2023)10.1038/s41467-023-38106-3

N/A

0.626DataRank · unranked

64 citations

Katja Pekrun, Shinnosuke Tsuji, Feijie Zhang, King L. Hung, Howard Y. Chang +2 more

Genome engineering with Cas9 and AAV repair templates generates frequent concatemeric insertions of viral vectors

Nature Biotechnology(2024)10.1038/s41587-024-02171-w

N/A

0.614DataRank · unranked

59 citations

Daiki Karigane, Yusuke Nakauchi, Maimi Higuchi, Jinyu Zhang, Katja Pekrun +11 more

Correlation of antigen expression with epigenetic modifications after rAAV delivery of a human factor IX variant in mice and rhesus macaques

Molecular Therapy(2024)10.1016/j.ymthe.2024.05.005

N/A

0.445DataRank · unranked

9 citations

Calvin J. Stephens, Adriana Gonzalez‐Sandoval, Aranyak Goswami, Feijie Zhang, Alice F. Tarantal +3 more

Tracking Adeno-Associated Virus Capsid Evolution by High-Throughput Sequencing

Human Gene Therapy(2020)10.1089/hum.2019.339

N/A

0DataRank · unranked

22 citations

Katja Pekrun, Paul N. Valdmanis, Matthew Tiffany, Jianpeng Xu, Mark A. Kay +1 more

Improved Genome Editing through Inhibition of FANCM and Members of the BTR Dissolvase Complex

Molecular Therapy(2020)10.1016/j.ymthe.2020.10.020

N/A

0DataRank · unranked

13 citations

Francesco Puzzo, Mara Pavel-Dinu, Feijie Zhang, Sirika Pillay, Karim Majzoub +10 more

Evaluating the Genomic Parameters Governing rAAV-Mediated Homologous Recombination

Molecular Therapy(2020)10.1016/j.ymthe.2020.11.025

N/A

0DataRank · unranked

13 citations

Matthew Tiffany, Nicole M. Ferraro, Nathan S. Abell, Stephen B. Montgomery, Mark A. Kay +1 more

Tyrosine kinase inhibitors induce mitochondrial dysfunction during cardiomyocyte differentiation through alteration of GATA4-mediated networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077024

N/A

0DataRank · unranked

1 citations

Haodi Wu, Qing-Jun Luo, Chao Jiang, Zhana Duren, Kevin Van Bortle +22 more

The 3'tsRNAs are aminoacylated: Implications for their biogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.15.422816

N/A

0DataRank · unranked

0 citations

Hak Kyun Kim, Jianpeng Xu, Mark A. Kay, Ziwei Liu

Improving the efficiency of liver targeting rAAV-mediated homologous recombination using ribonucleotide reductase inhibitors

Research Square(2020)10.21203/rs.3.rs-106148/v1

N/A

0DataRank · unranked

0 citations

Calvin Stevens, Giulia Bortolussi, Feijie Zhang, Katja Pekrun, Gabriele Baj +4 more

Translational Data from Adeno-Associated Virus-Mediated Gene Therapy of Hemophilia B in Dogs

UNC Libraries(2020)10.17615/9j6c-jx79

N/A

0DataRank · unranked

0 citations

Mark A. Kay, Valder R. Arruda, Timothy C. Nichols, Katherine A. High, Hansell H. Stedman +1 more

RNA structure probing reveals the structural basis of Dicer binding and cleavage

Nature Communications(2021)10.1038/s41467-021-23607-w

N/A

0DataRank · unranked

71 citations

Jinsong Zhang, Pan Li, Qing Wang, Yue Zhang, Biswajoy Roy‐Chaudhuri +4 more

The 3’tsRNAs are aminoacylated: Implications for their biogenesis

PLoS Genetics(2021)10.1371/journal.pgen.1009675

N/A

0DataRank · unranked

25 citations

Hak Kyun Kim, Jianpeng Xu, Yuqing Jing, Mark A. Kay, Ziwei Liu

The Role of tRNA Derived Small RNAs in Gene Regulation in Normal Tissues and Cancer

The FASEB Journal(2021)10.1096/fasebj.2021.35.s1.00031

N/A

0DataRank · unranked

0 citations

Mark A. Kay

Selection of rAAV vectors that cross the human blood-brain barrier and target the central nervous system using a transwell model

Molecular Therapy — Methods & Clinical Development(2022)10.1016/j.omtm.2022.09.002

N/A

0DataRank · unranked

38 citations

Katja Pekrun, Themasap A. Khan, Feijie Zhang, Sergiu P. Pașca, Mark A. Kay +1 more

A Standardized Ontology for Naming tRNA-derived RNAs Based on Molecular Origin

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.06.490965

N/A

0DataRank · unranked

7 citations

Patricia P. Chan, Qi Chen, Pavel Ivanov, Laurence Drouard, Norbert Polacek +3 more

Selection of rAAV Vectors that Cross the Human Blood-Brain Barrier and Target the Central Nervous System Using a Transwell Model

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.06.498990

N/A

0DataRank · unranked

1 citations

Katja Pekrun, Themasap A. Khan, Feijie Zhang, Sergiu P. Pașca, Mark A. Kay +1 more

Capsid-mediated chromatin state of the AAV vector genome controls host species range

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511169

N/A

0DataRank · unranked

0 citations

Shinnosuke Tsuji, Feijie Zhang, King L. Hung, Howard Y. Chang, Katja Pekrun +2 more

Aptamer-programmable adeno-associated viral vectors as a novel platform for cell-specific gene transfer

Molecular Therapy — Nucleic Acids(2023)10.1016/j.omtn.2023.01.007

N/A

0DataRank · unranked

34 citations

Chuanling Zhang, Bethany Powell Gray, Feijie Zhang, Bruce A. Sullenger, Mark A. Kay +1 more

Selection of viral capsids and promoters affects the efficacy of rescue of Tmprss3-deficient cochlea

Molecular Therapy — Methods & Clinical Development(2023)10.1016/j.omtm.2023.08.004

N/A

0DataRank · unranked

20 citations

Katja Pekrun, Patrick J. Atkinson, Sara Billings, Julia M. Abitbol, Ina A. Lee +7 more

A strategy for high antibody expression with low anti-drug antibodies using AAV9 vectors

Frontiers in Immunology(2023)10.3389/fimmu.2023.1105617

N/A

0DataRank · unranked

15 citations

Jesse A. Weber, Jun Xie, Katja Pekrun, Eric A. Alexander, Kim L. Weisgrau +7 more

Ruvkun and Ambros recognized for miRNAs

Molecular Therapy — Nucleic Acids(2024)10.1016/j.omtn.2024.102379

N/A

0DataRank · unranked

8 citations

Mark A. Kay

AAV-mediated genome editing is influenced by the formation of R-loops

Molecular Therapy(2024)10.1016/j.ymthe.2024.09.035

N/A

0DataRank · unranked

3 citations

Magdalena P. Crossley, Aranyak Goswami, Feijie Zhang, Katja Pekrun, Jada L. Garzon +3 more

AAV-mediated genome editing is influenced by the formation of R-loops

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.07.592855

N/A

0DataRank · unranked

0 citations

Magdalena P. Crossley, Aranyak Goswami, Feijie Zhang, Katja Pekrun, Jada L. Garzon +3 more

The deLIVERed promises of gene therapy: Past, present, and future of liver-directed gene therapy

Molecular Therapy(2025)10.1016/j.ymthe.2025.03.041

N/A

0DataRank · unranked

20 citations

Mark A. Kay, Francesco Puzzo

Stereo-random oligonucleotides enable efficient recruitment of ADAR in vitro and in vivo

Nature Communications(2025)10.1038/s41467-025-64434-7

N/A

0DataRank · unranked

2 citations

Tobias Merkle, Paul Vogel, Inga Jarmoskaite, Jonathan M. Geisinger, Ngadhnjim Latifi +13 more

Functional analysis of tRNA-derived small translational regulation

Methods in enzymology on CD-ROM/Methods in enzymology(2025)10.1016/bs.mie.2024.11.017

N/A

0DataRank · unranked

1 citations

Hak Kyun Kim, Mark A. Kay, Dong-Jin Kim

Novel NanoLuc substrates enable bright two-population bioluminescence imaging in animals

Nature Methods(2020)10.1038/s41592-020-0889-6

N/A

0DataRank · unranked

208 citations

Joel R. Walker, Yun‐Hee Park, Thomas P. Smith, Lan Xiang Liu, Mary P. Hall +14 more

Integrated AAV optimization enables efficient gene delivery to kidney in murine and human tissue

Research Square(2025)10.21203/rs.3.rs-7925411/v1

N/A

0DataRank · unranked

0 citations

Miriam Rivera Moreno, Shashank Chetty, Najani Shanee Johnson, Andrea An, Juliet Sostena +18 more

Evolution of a Human-Specific Tandem Repeat Associated with ALS

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.07.004

N/A

0DataRank · unranked

60 citations

Kathryn Gudsnuk, Samuel N. Smukowski, Kosuke Winston, Nitin Desai, Jay P. Ross +15 more

Promoterless, Nuclease‐Free Genome Editing Confers a Growth Advantage for Corrected Hepatocytes in Mice With Methylmalonic Acidemia

Hepatology(2020)10.1002/hep.31570

N/A

0DataRank · unranked

55 citations

Leah E. Venturoni, Jing Liao, Brandon T. Hubbard, Jessica L. Schneller, Victoria Hoffmann +9 more

AAV vectors engineered to target insulin receptor greatly enhance intramuscular gene delivery

Molecular Therapy — Methods & Clinical Development(2020)10.1016/j.omtm.2020.11.004

N/A

0DataRank · unranked

16 citations

Audrey S. Richard, Amrita Ojha, Kimberly A. Conkright, Jeffrey M. Trimarchi, Charles C. Bailey +5 more