Amy D. Willis

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceDentistryAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome”.

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Genome biology(2020)10.1186/s13059-020-02195-w

N/A

4.4DataRank · unranked

261 citations

Amy D. Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid +11 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

eLife(2023)10.7554/elife.89862

N/A

0.679DataRank · unranked

27 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.10.540289

N/A

0.425DataRank · unranked

16 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.29.069278

N/A

0DataRank · unranked

19 citations

Amy D. Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid +11 more

Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii

Journal of Experimental Zoology Part B Molecular and Developmental Evolution(2021)10.1002/jez.b.23100

N/A

0DataRank · unranked

242 citations

David S. Clausen, Ryan W. Null, Bria M. Metzger, Amy D. Willis, B. Duygu Özpolat +1 more

Estimation of cell lineage trees by maximum-likelihood phylogenetics

The Annals of Applied Statistics(2021)10.1214/20-aoas1400

N/A

0DataRank · unranked

41 citations

William S. DeWitt, Aaron McKenna, Noah Simon, Amy D. Willis, Frederick A. Matsen +1 more

Evaluating replicability in microbiome data

Biostatistics(2021)10.1093/biostatistics/kxab048

N/A

0DataRank · unranked

34 citations

Amy D. Willis, David S. Clausen

A multiview model for relative and absolute microbial abundances

Biometrics(2021)10.1111/biom.13503

N/A

0DataRank · unranked

22 citations

James P. Hughes, Amy D. Willis, Brian D. Williamson

Segment number threshold determines juvenile onset of germline cluster proliferation in Platynereis dumerilii

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.22.439825

N/A

0DataRank · unranked

7 citations

David S. Clausen, Ryan W. Null, Bria M. Metzger, Amy D. Willis, B. Duygu Özpolat +1 more

Implications of taxonomic bias for microbial differential-abundance analysis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.19.504330

N/A

0DataRank · unranked

25 citations

Jacob T. Nearing, Amy D. Willis, Karen G. Lloyd, Benjamin J. Callahan, Michael R. McLaren

Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.30.498290

N/A

0DataRank · unranked

10 citations

Luiz Irber, Alicia A. Gingrich, Dylan Haynes, N. Tessa Pierce‐Ward, Phillip Brooks +7 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

(2023)10.7554/elife.89862.1

N/A

0DataRank · unranked

10 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.25.534219

N/A

0DataRank · unranked

6 citations

Matthew S. Schechter, Karen Lolans, Madeline L. Sheahan, Iva Veseli, Ryan M. Moore +11 more

Reviewer #2 (Public Review): Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

(2023)10.7554/elife.89862.1.sa1

N/A

0DataRank · unranked

0 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Reviewer #1 (Public Review): Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

(2023)10.7554/elife.89862.1.sa2

N/A

0DataRank · unranked

0 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche

Nature(2024)10.1038/s41586-024-07182-w

N/A

0DataRank · unranked

405 citations

Samuel S. Minot, Heather Bouzek, Hanrui Wu, Aitor Blanco‐Míguez, Paolo Manghi +17 more

A cryptic plasmid is among the most numerous genetic elements in the human gut

Cell(2024)10.1016/j.cell.2024.01.039

N/A

0DataRank · unranked

62 citations

Matthew S. Schechter, Karen Lolans, Madeline L. Sheahan, Iva Veseli, Ryan M. Moore +13 more

Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies

Research Square(2024)10.21203/rs.3.rs-3638876/v1

N/A

0DataRank · unranked

4 citations

Raymond C. Parrish, Viral S. Shah, Matthew C. Ross, Juwan Cormier, Aribah Baig +8 more

Estimating diversity in networked ecological communities

Biostatistics(2020)10.1093/biostatistics/kxaa015

N/A

0DataRank · unranked

149 citations

Bryan D Martin, Amy D. Willis

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

eLife(2025)10.7554/elife.89862.3

N/A

0DataRank · unranked

6 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Strategies to Facilitate Translational Advances from Microbiome Surveys

Trends in Microbiology(2020)10.1016/j.tim.2020.02.002

N/A

0DataRank · unranked

9 citations

Samuel S. Minot, Amy D. Willis

Modeling microbial abundances and dysbiosis with beta-binomial regression

The Annals of Applied Statistics(2020)10.1214/19-aoas1283

N/A

0DataRank · unranked

36 citations

Daniela Witten, Amy D. Willis, Bryan D Martin