🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Xiaoyin Chen

Allen Institute for Brain Science

ORCID: 0000-0002-2807-6125

Also affiliated with Allen Institute

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
4.7Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w
Top 6%
3.6DataRank
Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

Papers

Driven by 22 papers — median percentile 88. Top paper: “Cellular anatomy of the mouse primary motor cortex”.

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w
Top 6%
3.6DataRank
Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

Cellular Anatomy of the Mouse Primary Motor Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.02.323154
Top 18%
1.2DataRank
Top 18%45 citations

Brian Zingg, Katherine S. Matho, Quanxin Wang, Xiaoyin Chen, Nicholas N. Foster +77 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

eLife(2024)10.7554/elife.87866
N/A
0.590DataRank · unranked
17 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2023)10.7554/elife.87866.1
N/A
0.296DataRank · unranked
5 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.16.532873
N/A
0.177DataRank · unranked
2 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

eLife(2024)10.7554/elife.87866.2
N/A
0.165DataRank · unranked
2 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex

Cell(2022)10.1016/j.cell.2022.09.038
N/A
0DataRank · unranked
118 citations

Xiaoyin Chen, Batuhan Başerdem, Huiqing Zhan, Yan Li, Martin B. Davis +5 more

Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.31.502046
N/A
0DataRank · unranked
2 citations

Alex Vaughan, Daniel Leible, Shahar Alon, Gilbert L. Henry, A. H. Cheng +13 more

Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.18.528865
N/A
0DataRank · unranked
8 citations

Xiaoyin Chen, Huiqing Zhan, Henry L. Gilbert, Anthony M. Zador, Li Yuan

Reviewer #3 (Public Review): Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2023)10.7554/elife.87866.1.sa0
N/A
0DataRank · unranked
0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy van Velthoven, Heather Sullivan +6 more

Whole-cortex in situ sequencing reveals input-dependent area identity

Nature(2024)10.1038/s41586-024-07221-6
N/A
0DataRank · unranked
54 citations

Stephan Fischer, M. Rué, Aixin Zhang, Didhiti Mukherjee, Patrick O. Kanold +3 more

Massive multiplexing of spatially resolved single neuron projections with axonal BARseq

Nature Communications(2024)10.1038/s41467-024-52756-x
N/A
0DataRank · unranked
25 citations

Xiaoyin Chen, Huiqing Zhan, Gilbert L. Henry, Anthony M. Zador, Li Yuan

Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections

Nature Communications(2024)10.1038/s41467-024-47883-4
N/A
0DataRank · unranked
7 citations

Alain Trouvé, Laurent Younès, Michael Kunst, Lydia Ng, Hongkui Zeng +7 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

eLife(2024)10.7554/elife.87866.3
N/A
0DataRank · unranked
5 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Heather A. Sullivan +6 more

Cross-expression meta-analysis of 695 brain samples reveals coordinated gene expression across spatially adjacent cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.17.613579
N/A
0DataRank · unranked
0 citations

Mara C.P. Rue, Leon French, J. Helen Cross, Sarah Choi, Xiaoyin Chen +2 more

Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells

Genome biology(2025)10.1186/s13059-025-03747-8
N/A
0DataRank · unranked
1 citations

Mara C.P. Rue, Leon French, J. Helen Cross, Sarah Choi, Xiaoyin Chen +2 more

The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales

Communications Biology(2025)10.1038/s42003-025-08800-7
N/A
0DataRank · unranked
0 citations

Xiaoyin Chen, Hongkui Zeng, Benjamin Charlier, Laurent Younès, Alain Trouvé +2 more

Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2024)10.7554/elife.87866.3.sa4
N/A
0DataRank · unranked
0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Na Sun, Sharon L. R. Kardia +6 more

Reviewer #1 (Public Review): Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2023)10.7554/elife.87866.1.sa2
N/A
0DataRank · unranked
0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Heather A. Sullivan +7 more

Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2024)10.7554/elife.87866.2.sa4
N/A
0DataRank · unranked
0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections

Nature Neuroscience(2021)10.1038/s41593-021-00842-4
N/A
0DataRank · unranked
131 citations

Xiaoyin Chen, Stephan Fischer, Shaina Lu, Huiqing Zhan, Jesse Gillis +2 more

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008256
N/A
0DataRank · unranked
31 citations

Jackson Loper, Xiaoyin Chen, Alex Vaughan, Anthony M. Zador, Liam Paninski +1 more