🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Leming Shi

Shanghai International Studies University

ORCID: 0000-0002-2981-4150

Also affiliated with Fudan University, Fudan University Shanghai Cancer Center, Shanghai Xuhui Central Hospital, Shanghai Institutes for International Studies, Food and Drug Administration, ProNAi Therapeutics (United States), State Key Laboratory of Genetic Engineering

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
11.1Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global metagenomic map of urban microbiomes and antimicrobial resistance

Cell(2021)10.1016/j.cell.2021.05.002
Top 4%
5.1DataRank
Top 4%390 citations

Daniela Bezdan, Evan E. Afshin, Sofia Ahsanuddin, Chandrima Bhattacharya, Daniel Butler +95 more

Papers

Driven by 15 papers — median percentile 80. Top paper: “A global metagenomic map of urban microbiomes and antimicrobial resistance”.

A global metagenomic map of urban microbiomes and antimicrobial resistance

Cell(2021)10.1016/j.cell.2021.05.002
Top 4%
5.1DataRank
Top 4%390 citations

Daniela Bezdan, Evan E. Afshin, Sofia Ahsanuddin, Chandrima Bhattacharya, Daniel Butler +95 more

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6
Top 8%
2.7DataRank
Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study

Scientific Data(2021)10.1038/s41597-021-01077-5
Top 12%
1.7DataRank
Top 12%60 citations

Li Tai Fang, Tsai-Wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen +33 more

Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling

Nature Biotechnology(2023)10.1038/s41587-023-01867-9
Top 28%
0.709DataRank
Top 28%41 citations

Wanwan Hou, Yaqing Liu, Haiyan Wang, Lianhua Dong, Yuanbang Mai +44 more

Whole Genome and Exome Sequencing Reference Datasets from A Multi-center and Cross-platform Benchmark Study

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433136
Top 33%
0.603DataRank
Top 33%10 citations

Li Tai Fang, Tsai-Wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen +31 more

Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project

Scientific Reports(2024)10.1038/s41598-024-57439-7
Top 57%
0.279DataRank
Top 57%5 citations

Dan Li, Yifan Zhang, Rebecca Kusko, Samir Lababidi, Zehui Cao +55 more

A standardized fold change method for microarray differential expression analysis used to reveal genes involved in acute rejection in murine allograft models

FEBS Open Bio(2018)10.1002/2211-5463.12343
N/A
0.264DataRank · unranked
3 citations

Yi Wang, Masayuki Fujino, Leming Shi, Li Jin, Xiao‐Kang Li +2 more

Shared Genetic Etiology of Primary Dilated Cardiomyopathy and Ischemic Dilated Cardiomyopathy

Frontiers in Cardiovascular Medicine(2021)10.3389/fcvm.2021.752662
N/A
0DataRank · unranked
3 citations

Lei Xiao, Ke Li, Hong Wang, Xiuli Song, Zongzhe Li +13 more

A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

Genome biology(2021)10.1186/s13059-021-02316-z
N/A
0DataRank · unranked
61 citations

Binsheng Gong, Natalia Novoradovskaya, Dan Li, Rebecca Kusko, Todd Richmond +69 more

Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Genome biology(2022)10.1186/s13059-021-02569-8
N/A
0DataRank · unranked
56 citations

Luyao Ren, Vitor Onuchic, Meijian Guan, Rebecca Kusko, Steve Bruinsma +50 more

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00994-5
N/A
0DataRank · unranked
215 citations

Luyao Ren, Zhong Chen, Li Tai Fang, Yongmei Zhao, Justin Lack +85 more

Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Genome biology(2024)10.1186/s13059-024-03294-8
N/A
0DataRank · unranked
40 citations

Luyao Ren, Cu Nguyen, Francesco Brundu, Lily Zheng, Yongmei Zhao +21 more

Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

Nature Biotechnology(2021)10.1038/s41587-021-00857-z
N/A
0DataRank · unranked
271 citations

Binsheng Gong, Kevin Lai, Jennifer S. LoCoco, Todd Richmond, Jeoffrey Schageman +82 more

A standardized framework for circulating blood proteomics

Nature Genetics(2025)10.1038/s41588-025-02319-7
N/A
0DataRank · unranked
14 citations

Philipp E. Geyer, Yasset Perez-Riverol, Gilbert S. Omenn, Lianhua Dong, Robert Winkler +20 more

Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction

Scientific Reports(2020)10.1038/s41598-020-74567-y
N/A
0DataRank · unranked
46 citations

Po-Yen Wu, John H. Phan, Hamid R. Hassazadeh, Wendell Jones, Leming Shi +21 more