Daniel S. Himmelstein

Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania , Philadelphia, PA 19104 ,

ORCID: 0000-0002-3012-7446

Biochemistry, Genetics and Molecular BiologyDecision SciencesComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.2Author DataRank

Indexed papers

16in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 16 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Sci-Hub provides access to nearly all scholarly literature

Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)(2017)10.7287/peerj.preprints.3100v1

Top 8%

2.9DataRank

Top 8%39 citations

Ariel Rodriguez Romero, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S. Greene, Daniel S. Himmelstein

Papers

Driven by 43 papers — median percentile 22. Top paper: “Opportunities and obstacles for deep learning in biology and medicine”.

Opportunities and obstacles for deep learning in biology and medicine

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/142760

N/A

11.2DataRank · unranked

310 citations

Daniel S. Himmelstein, Brett K. Beaulieu‐Jones, Alexandr A. Kalinin, Brian T. Do, Gregory P. Way +31 more

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS

Bioinformatics(2010)10.1093/bioinformatics/btq009

N/A

4.7DataRank · unranked

84 citations

Nicholas A Sinnott-Armstrong, Daniel S. Himmelstein, Paul J. Park, Jason H. Moore, Brent T. Harris +2 more

Open collaborative writing with Manubot

PLOS Computational Biology(2019)10.1371/journal.pcbi.1007128

N/A

4.2DataRank · unranked

83 citations

Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene +2 more

Sci-Hub provides access to nearly all scholarly literature

Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)(2017)10.7287/peerj.preprints.3100v1

Top 8%

2.9DataRank

Top 8%39 citations

Ariel Rodriguez Romero, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S. Greene, Daniel S. Himmelstein

Mondo: Unifying diseases for the world, by the world

medRxiv(2022)10.1101/2022.04.13.22273750

Top 8%

2.7DataRank

Top 8%104 citations

Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack, Harshad Hegde, Deepak R Unni +83 more

Precision annotation of digital samples in NCBI’s gene expression omnibus

Scientific Data(2017)10.1038/sdata.2017.125

Top 11%

1.9DataRank

Top 11%54 citations

James Pan, Osama El-Sayed, Jihad Aljabban, Imad Aljabban, Tej D. Azad +17 more

Evolving hard problems: Generating human genetics datasets with a complex etiology

BioData Mining(2011)10.1186/1756-0381-4-21

N/A

1.4DataRank · unranked

27 citations

Casey S. Greene, Jason H. Moore, Daniel S. Himmelstein

Analysis of ISCB honorees and keynotes reveals disparities

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.14.927251

N/A

1.2DataRank · unranked

12 citations

Daniel S. Himmelstein, Ariel A. Hippen Anderson, Matthew R. Gazzara, Casey S. Greene, Trang T. Le

Opportunities and obstacles for deep learning in biology and medicine

Journal of The Royal Society Interface(2018)10.1098/rsif.2017.0387

N/A

1.2DataRank · unranked

2203 citations

Daniel S. Himmelstein, Brett K. Beaulieu‐Jones, Alexandr A. Kalinin, Brian T. Do, Gregory P. Way +31 more

Understanding multicellular function and disease with human tissue-specific networks

Nature Genetics(2015)10.1038/ng.3259

N/A

1.0DataRank · unranked

925 citations

Krishnan, Arjun, Aaron K. Wong, Emanuela Ricciotti, Daniel S. Himmelstein, Ran Zhang +12 more

The probability of edge existence due to node degree: a baseline for network-based predictions

GigaScience(2024)10.1093/gigascience/giae001

N/A

0.792DataRank · unranked

19 citations

Daniel S. Himmelstein, Kyle Kloster, Christopher K. I. Williams, Michael W. Nagle, Casey S. Greene +1 more

Sci-Hub provides access to nearly all scholarly literature

Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)(2017)10.7287/peerj.preprints.3100v2

Top 27%

0.756DataRank

Top 27%8 citations

Ariel Rodriguez Romero, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S. Greene, Daniel S. Himmelstein

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

mSystems(2023)10.1128/msystems.00927-22

N/A

0.718DataRank · unranked

22 citations

Alexandra J. Lee, Elizabeth Sell, Likhitha Kolla, Anthony Gitter, Casey S. Greene +32 more

The Coming of Age of Nucleic Acid Vaccines during COVID-19

mSystems(2023)10.1128/msystems.00928-22

N/A

0.709DataRank · unranked

22 citations

Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, Nils Wellhausen +46 more

Is authorship sufficient for today’s collaborative research? A call for contributor roles

Accountability in Research(2020)10.1080/08989621.2020.1779591

N/A

0.598DataRank · unranked

53 citations

Mohammad Hosseini, Samantha Teplitzky, Violeta Ilik, Ehsan Mohammadi, Juliane Schneider +11 more

Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/573782

N/A

0.476DataRank · unranked

9 citations

Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene, Gregory P. Way

A Model Free Method to Generate Human Genetics Datasets with Complex Gene-Disease Relationships

Lecture Notes in Computer Science(2010)10.1007/978-3-642-12211-8_7

N/A

0.441DataRank · unranked

3 citations

Daniel S. Himmelstein, Jason H. Moore, Casey S. Greene

ENABLING PERSONAL GENOMICS WITH AN EXPLICIT TEST OF EPISTASIS

Biocomputing 2010(2009)10.1142/9789814295291_0035

N/A

0.396DataRank · unranked

13 citations

Daniel S. Himmelstein, HEATHER H. NELSON, KARL T. KELSEY, SCOTT M. WILLIAMS, ANGELINE S. ANDREW +3 more

The probability of edge existence due to node degree: a baseline for network-based predictions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.05.522939

N/A

0.365DataRank · unranked

5 citations

Daniel S. Himmelstein, Kyle Kloster, Christopher K. I. Williams, Michael W. Nagle, Casey S. Greene +1 more

PMLB v1.0: an open-source dataset collection for benchmarking machine learning methods

Bioinformatics(2021)10.1093/bioinformatics/btab727

Top 49%

0.359DataRank

Top 49%4 citations

Trang T. Le, William La Cava, John Gregg, Daniel J. Goldberg, Praneel Chakraborty +5 more

Hetnet connectivity search provides rapid insights into how biomedical entities are related

GigaScience(2022)10.1093/gigascience/giad047

N/A

0.292DataRank · unranked

6 citations

Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, Faisal Alquaddoomi +7 more

gene-ontology: Initial zenodo release

Zenodo (CERN European Organization for Nuclear Research)(2015)10.5281/zenodo.21711

Top 58%

0.271DataRank

Top 58%4 citations

Casey S. Greene, Venkat S. Malladi, Frederic Bastian, Sergio E. Baranzini, Daniel S. Himmelstein

Expanding a database-derived biomedical knowledge graph via multi-relation extraction from biomedical abstracts

BioData Mining(2022)10.1186/s13040-022-00311-z

N/A

0.269DataRank · unranked

5 citations

Daniel S. Himmelstein, Casey S. Greene, David N. Nicholson

Highly connected genes contain more SNPs

Zenodo (CERN European Organization for Nuclear Research)(2015)10.5281/zenodo.30105

N/A

0.241DataRank · unranked

4 citations

Casey S. Greene, Daniel S. Himmelstein

Expanding a Database-derived Biomedical Knowledge Graph via Multi-relation Extraction from Biomedical Abstracts

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/730085

N/A

0.165DataRank · unranked

2 citations

Daniel S. Himmelstein, Casey S. Greene, David N. Nicholson

Author response: Sci-Hub provides access to nearly all scholarly literature

(2018)10.7554/elife.32822.022

N/A

0.165DataRank · unranked

2 citations

Ariel Rodriguez Romero, Jacob G Levernier, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras +2 more

An Open-Publishing Response to the COVID-19 Infodemic

PubMed(2021)10.48550/arxiv.2109.08633

N/A

0.104DataRank · unranked

1 citations

Simina M. Boca, Lucy D’Agostino McGowan, Daniel S. Himmelstein, Michael P. Robson, Vincent Rubinetti +5 more

Node connectivity measurements for Hetionet v1.0 metapaths

Zenodo (CERN European Organization for Nuclear Research)(2018)10.5281/zenodo.1435833

Top 78%

0.104DataRank

Top 78%1 citations

Michael Zietz, Kyle Kloster, Michael W. Nagle, Blair D. Sullivan, Casey S. Greene +1 more

Sci-Hub provides access to nearly all scholarly literature

CrimRxiv(2024)10.21428/cb6ab371.fe311245

Top 78%

0.104DataRank

Top 78%1 citations

Ariel Rodriguez Romero, Jacob G Levernier, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras +2 more

Sci-Hub provides access to nearly all scholarly literature

Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)(2018)10.7287/peerj.preprints.3100v3

Top 78%

0.104DataRank

Top 78%1 citations

Ariel Rodriguez Romero, Thomas Anthony Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S. Greene +2 more

Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations

Genome biology(2020)10.1186/s13059-020-02021-3

N/A

0DataRank · unranked

84 citations

Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene, Gregory P. Way

Unifying the identification of biomedical entities with the Bioregistry

Scientific Data(2022)10.1038/s41597-022-01807-3

N/A

0DataRank · unranked

33 citations

Meghan A. Balk, Tiffany J. Callahan, Daniel Domingo-Fernández, Melissa A Haendel, Harshad Hegde +14 more

Mondo: integrating disease terminology across communities

Genetics(2025)10.1093/genetics/iyaf215

N/A

0DataRank · unranked

16 citations

Sabrina Toro, Nicolas A Matentzoglu, Joseph E Flack, Kathleen R. Mullen, Harshad Hegde +95 more

TCGA Pan-Cancer expression and mutation data for Project Cognoma

Figshare(2016)10.6084/m9.figshare.3487685.v3

Top 100%

0DataRank

Top 100%0 citations

Gregory P. Way, Claire McLeod, Casey S. Greene, Daniel S. Himmelstein

Node connectivity measurements for Hetionet v1.0 metapaths

Zenodo (CERN European Organization for Nuclear Research)(2018)10.5281/zenodo.1435834

Top 100%

0DataRank

Top 100%0 citations

Michael Zietz, Kyle Kloster, Michael W. Nagle, Blair D. Sullivan, Casey S. Greene +1 more

Node connectivity measurements for Hetionet v1.0 metapaths

Zenodo (CERN European Organization for Nuclear Research)(2018)10.5281/zenodo.3978766

Top 100%

0DataRank

Top 100%0 citations

Michael Zietz, Kyle Kloster, Michael W. Nagle, Blair D. Sullivan, Casey S. Greene +1 more

Additional file 4 of Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations

Figshare(2020)10.6084/m9.figshare.12285512

N/A

0DataRank · unranked

0 citations

Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene, Gregory P. Way

greenelab/BioBombe: Accepted Manuscript - Genome Biology

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.3744941

Top 100%

0DataRank

Top 100%0 citations

Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene, Gregory P. Way

Additional file 6 of Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations

Figshare(2020)10.6084/m9.figshare.12285518

Top 100%

0DataRank

Top 100%0 citations

Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene, Gregory P. Way

Additional file 3 of Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations

(2020)10.6084/m9.figshare.12285506

N/A

0DataRank · unranked

0 citations

Michael Zietz, Vincent Rubinetti, Daniel S. Himmelstein, Casey S. Greene, Gregory P. Way

Hetnet connectivity search provides rapid insights into how two biomedical entities are related

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.05.522941

N/A

0DataRank · unranked

0 citations

Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, Faisal Alquaddoomi +7 more

TCGA Pan-Cancer sample, expression, and mutation data for Project Cognoma

Figshare(2016)10.6084/m9.figshare.3487685.v5

Top 100%

0DataRank

Top 100%0 citations

Gregory P. Way, C McLeod, Stephen D. Shank, Casey S. Greene, Daniel S. Himmelstein

TCGA Pan-Cancer expression and mutation data for Project Cognoma

Figshare(2016)10.6084/m9.figshare.3487685.v1

Top 100%

0DataRank

Top 100%0 citations

Gregory P. Way, Casey S. Greene, Daniel S. Himmelstein

Daniel S. Himmelstein

Indexed papers

Top data-sharing exemplar

Papers