Deepak Shukla

Also affiliated with University of Illinois Chicago, University of Chicago

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 61 papers. Top paper: “Synthetic Heparanase Inhibitors Can Prevent Herpes Simplex Viral Spread”.

Synthetic Heparanase Inhibitors Can Prevent Herpes Simplex Viral Spread

Angewandte Chemie International Edition(2023)10.1002/anie.202309838

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0.739DataRank · unranked

15 citations

Tejabhiram Yadavalli, Francesco Palmieri, Seino A. K. Jongkees, Luca Unione, Deepak Shukla +2 more

Heparanase, cell signaling, and viral infections

Cellular and Molecular Life Sciences(2020)10.1007/s00018-020-03559-y

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0DataRank · unranked

73 citations

Rahul K. Suryawanshi, Deepak Shukla, Raghuram Koganti

BX795 demonstrates potent antiviral benefits against herpes simplex Virus-1 infection of human cell lines

Antiviral Research(2020)10.1016/j.antiviral.2020.104814

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0DataRank · unranked

16 citations

Rahul K. Suryawanshi, Tejabhiram Yadavalli, Ipsita Volety, Deepak Shukla, Aqsa Iqbal

Implementation of COVID-19 Protocols and Tele-Triage in an Academic Ophthalmology Department

Journal of Academic Ophthalmology(2020)10.1055/s-0040-1715807

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0DataRank · unranked

10 citations

Emily Cole, Nita Valikodath, Chau Pham, Thasarat S. Vajaranant, Deepak P. Edward +10 more

Wound Healing Properties of Histatin-5 and Identification of a Functional Domain Required for Histatin-5-Induced Cell Migration

Molecular Therapy — Methods & Clinical Development(2020)10.1016/j.omtm.2020.03.027

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38 citations

Kyung‐No Son, Sushma Kalmodia, Bao‐Shiang Lee, Marwan Ali, Arun Balasubramaniam +3 more

Bacterial Pigment Prodigiosin Demonstrates a Unique Antiherpesvirus Activity That Is Mediated through Inhibition of Prosurvival Signal Transducers

Journal of Virology(2020)10.1128/jvi.00251-20

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0DataRank · unranked

38 citations

Lulia Koujah, Chandrashekhar D. Patil, Joshua Ames, Alex Agelidis, Tejabhiram Yadavalli +3 more

Standalone or combinatorial phenylbutyrate therapy shows excellent antiviral activity and mimics CREB3 silencing

Science Advances(2020)10.1126/sciadv.abd9443

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24 citations

Rahul K. Suryawanshi, Raghuram Koganti, James Hopkins, Joshua Ames, Lulia Koujah +5 more

Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238758

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0DataRank · unranked

0 citations

Benjamin A. Turturice, Rahul K. Suryawanshi, Tejabhiram Yadavalli, Dinesh Jaishankar, Joshua Ames +14 more

mTORC2 combats cellular stress and potentiates immunity during viral infection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.09.333500

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0 citations

Chandrashekhar D. Patil, Alex Agelidis, Raghuram Koganti, Joshua Ames, Lulia Koujah +5 more

Characterization of heparan sulphate 3-O-sulphotransferase isoform 6 and its role in assisting the entry of herpes simplex virus type 1

UNC Libraries(2020)10.17615/py3r-rz66

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0DataRank · unranked

0 citations

Vaibhav Tiwari, Deepak Shukla, Guoqing XIA, Jian Liu, Ding Xu +1 more

Syndecan-1 and syndecan-2 play key roles in herpes simplex virus type-1 infection

UNC Libraries(2020)10.17615/8ayb-vb89

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0 citations

Tibor Vályi-Nagy, Sarolta Bacsa, Deepak Shukla, Jian Liu, Sándor Dósa +1 more

Anti-heparan Sulfate Peptides That Block Herpes Simplex Virus Infection in Vivo

UNC Libraries(2020)10.17615/ccew-hx81

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0 citations

Deepak Shukla, Vaibhav Tiwari, Jian Liu, Tibor Vályi-Nagy

Herpes Simplex Virus Cell Entry Mechanisms: An Update

Frontiers in Cellular and Infection Microbiology(2021)10.3389/fcimb.2020.617578

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187 citations

Raghuram Koganti, Ipsita Volety, Tejabhiram Yadavalli, Deepak Shukla, Krishnaraju Madavaraju

Role of Tunneling Nanotubes in Viral Infection, Neurodegenerative Disease, and Cancer

Frontiers in Immunology(2021)10.3389/fimmu.2021.680891

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79 citations

Raghuram Koganti, Greer Russell, Ananya Sharma, Deepak Shukla, Vaibhav Tiwari

The 3- O -sulfation of heparan sulfate modulates protein binding and lyase degradation

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2012935118

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76 citations

Apoorva Joshi, Jiandong Wu, Weigang Lü, Tejabhiram Yadavalli, Margreet A. Wolfert +4 more

OPTN is a host intrinsic restriction factor against neuroinvasive HSV-1 infection

Nature Communications(2021)10.1038/s41467-021-25642-z

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0DataRank · unranked

68 citations

Tejabhiram Yadavalli, Rahul K. Suryawanshi, James Hopkins, Alex Agelidis, Chandrashekhar D. Patil +5 more

Pathobiology and treatment of viral keratitis

Experimental Eye Research(2021)10.1016/j.exer.2021.108483

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62 citations

Tejabhiram Yadavalli, Raza Ali Naqvi, Deepak Shukla, Afsar R. Naqvi, Raghuram Koganti

mTORC2 confers neuroprotection and potentiates immunity during virus infection

Nature Communications(2021)10.1038/s41467-021-26260-5

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15 citations

Chandrashekhar D. Patil, Alex Agelidis, Raghuram Koganti, Joshua Ames, Lulia Koujah +5 more

Emerging Roles of Heparan Sulfate Proteoglycans in Viral Pathogenesis

Seminars in Thrombosis and Hemostasis(2021)10.1055/s-0041-1725068

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26 citations

Abdullah Memon, Deepak Shukla, Raghuram Koganti

Intrinsic Antiviral Activity of Optineurin Prevents Hyperproliferation of a Primary Herpes Simplex Virus Type 2 Infection

The Journal of Immunology(2021)10.4049/jimmunol.2100472

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14 citations

Rahul K. Suryawanshi, Joshua Ames, Raghuram Koganti, Alex Agelidis, Divya Kapoor +5 more

Entry receptor bias in evolutionarily distant HSV-1 clinical strains drives divergent ocular and nervous system pathologies

The Ocular Surface(2021)10.1016/j.jtos.2021.03.005

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0DataRank · unranked

13 citations

M. Mowafak Allaham, Chandrashekhar D. Patil, Joshua Ames, Rahul K. Suryawanshi, Tejabhiram Yadavalli +6 more

Human herpesvirus-encoded MicroRNA in host-pathogen interaction

Advances in Biological Regulation(2021)10.1016/j.jbior.2021.100829

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0DataRank · unranked

9 citations

Alexandra Seal, Salvador Nares, Deepak Shukla, Afsar R. Naqvi, Araceli Valverde

Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival

JCI Insight(2021)10.1172/jci.insight.144255

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0DataRank · unranked

21 citations

Benjamin A. Turturice, Rahul K. Suryawanshi, Tejabhiram Yadavalli, Dinesh Jaishankar, Joshua Ames +14 more

Protease, Growth Factor, and Heparanase-Mediated Syndecan-1 Shedding Leads to Enhanced HSV-1 Egress

Viruses(2021)10.3390/v13091748

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14 citations

Divya Kapoor, Navya Bellamkonda, Chandrashekhar D. Patil, Deepak Shukla, Ghadah A. Karasneh

Dissociation of DNA damage sensing by endoglycosidase HPSE

iScience(2021)10.1016/j.isci.2021.102242

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13 citations

Rahul K. Suryawanshi, Chandrashekhar D. Patil, Anaamika Campeau, David J. Gonzalez, Deepak Shukla +1 more

Prophylactic treatment with BX795 blocks activation of AKT and its downstream targets to protect vaginal keratinocytes and vaginal epithelium from HSV-2 infection

Antiviral Research(2021)10.1016/j.antiviral.2021.105145

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0DataRank · unranked

9 citations

Tejabhiram Yadavalli, Sudhanshu Singh, Farreh Qatanani, Deepak Shukla, Krishnaraju Madavaraju

BX795-Organic Acid Coevaporates: Evaluation of Solid-State Characteristics, In Vitro Cytocompatibility and In Vitro Activity against HSV-1 and HSV-2

Pharmaceutics(2021)10.3390/pharmaceutics13111920

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6 citations

Tejabhiram Yadavalli, Sagar Kumar Paul, Sudipta Mallick, Raghuram Koganti, Harsh Chauhan +3 more

Heparan Sulfate Binding Cationic Peptides Restrict SARS-CoV-2 Entry

Pathogens(2021)10.3390/pathogens10070803

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10 citations

Chandrashekhar D. Patil, Raghuram Koganti, Sudhanshu Singh, Joshua Ames, Deepak Shukla +1 more

Nanoengineered Antiviral Fibrous Arrays with Rose-Thorn-Inspired Architectures

ACS Materials Letters(2021)10.1021/acsmaterialslett.1c00419

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0DataRank · unranked

8 citations

Mohamadmahdi Samandari, Chandrashekhar D. Patil, Reza Abolhassani, Rahul K. Suryawanshi, Rainer Adelung +7 more

Heparan Sulfate 3- O -Sulfotransferase Isoform 5 Generates Both an Antithrombin-binding Site and an Entry Receptor for Herpes Simplex Virus, Type 1

UNC Libraries(2021)10.17615/2jd5-pc52

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0DataRank · unranked

6 citations

Anders Malmström, Wujian Ju, Jian Liu, Vaibhav Tiwari, Jinghua Chen +3 more

Immune Response to SARS-CoV-2 Vaccines

Biomedicines(2022)10.3390/biomedicines10071464

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0DataRank · unranked

39 citations

Upendra P. Lambe, Sonali Sawant, Shyam Sundar Nandi, Chiranjib Chakraborty, Deepak Shukla +1 more

Role of Heparanase and Syndecan-1 in HSV-1 Release from Infected Cells

Viruses(2022)10.3390/v14102156

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20 citations

Divya Kapoor, Deepak Shukla, Pankaj Sharma

Topical phenylbutyrate antagonizes NF-κB signaling and resolves corneal inflammation

iScience(2022)10.1016/j.isci.2022.105682

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8 citations

Tejabhiram Yadavalli, Yogesh Sutar, Sudipta Mallick, Abhijit A. Date, Deepak Shukla +1 more

Modulation of ocular surface desiccation in a murine model by histatin-5 application

The Ocular Surface(2022)10.1016/j.jtos.2022.12.004

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6 citations

Dhara Shah, Terry G. Coursey, Sang‐Min Lee, Arun Balasubramaniam, Tejabhiram Yadavalli +5 more

Host microRNAs exhibit differential propensity to interact with SARS-CoV-2 and variants of concern

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease(2022)10.1016/j.bbadis.2022.166612

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8 citations

Justin M. Richner, Joel Schwartz, Sunil Kumar Mukherjee, Deepak Shukla, Afsar R. Naqvi +1 more

Putative targeting by BX795 causes decrease in protein kinase C protein levels and inhibition of HSV1 infection

Antiviral Research(2022)10.1016/j.antiviral.2022.105454

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4 citations

Chandrashekhar D. Patil, David Bin-Chia Wu, Pritam Kumar Panda, Sudhanshu Singh, Ipsita Volety +4 more

CREB3 Plays an Important Role in HPSE-Facilitated HSV-1 Release in Human Corneal Epithelial Cells

Viruses(2022)10.3390/v14061171

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7 citations

Pankaj Sharma, David Bin-Chia Wu, Divya Kapoor, Deepak Shukla, Tejabhiram Yadavalli

Optineurin in ocular herpes infection

Experimental Eye Research(2022)10.1016/j.exer.2022.109059

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0DataRank · unranked

5 citations

Deepak Shukla, Earon Grinage

Safety, efficacy and delivery of multiple nucleoside analogs via drug encapsulated carbon (DECON) based sustained drug release platform

European Journal of Pharmaceutics and Biopharmaceutics(2022)10.1016/j.ejpb.2022.03.001

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0DataRank · unranked

2 citations

Joshua Ames, David Bin-Chia Wu, Benjamin E. Ramirez, Navya Bellamkonda, Deepak Shukla +1 more

OPTN (optineurin)-mediated selective autophagy prevents neurodegeneration due to herpesvirus infection

Autophagy(2022)10.1080/15548627.2022.2037223

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18 citations

Deepak Shukla, Chandrashekhar D. Patil

Neutrophil Extracellular Traps and Their Possible Implications in Ocular Herpes Infection

Pathogens(2023)10.3390/pathogens12020209

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21 citations

Deepak Shukla, Divya Kapoor

Pathophysiology of reinfection by exogenous HSV-1 is driven by heparanase dysfunction

Science Advances(2023)10.1126/sciadv.adf3977

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9 citations

Chandrashekhar D. Patil, Alex Agelidis, Raghuram Koganti, Tejabhiram Yadavalli, Joshua Ames +3 more

OPTN-TBK1 axis and a role for PLK1 in HSV-1 infection

mBio(2023)10.1128/mbio.02715-23

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0DataRank · unranked

5 citations

Ipsita Volety, Deepak Shukla, Ilina Bhattacharya

In vitro protocol for the optimal induction of inflammation in human monocyte cell lines

STAR Protocols(2023)10.1016/j.xpro.2023.102342

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3 citations

Tejabhiram Yadavalli, Deepak Shukla, Raghuram Koganti

Tolerability, pharmacokinetics, and anti-herpetic activity of orally administered BX795

Biomedicine & Pharmacotherapy(2023)10.1016/j.biopha.2023.115056

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4 citations

Sudhanshu Singh, Abhijit A. Date, Deepak Shukla, Tejabhiram Yadavalli

UV-B induced HSV-1 reactivation leads to infectious virus in the corneas of virtually all latently infected mice and requires an intact STING to develop herpetic stromal keratitis

Research Square(2023)10.21203/rs.3.rs-3097720/v1

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1 citations

Alexis Hartman, Nadia Sirajuddin, Deepak Shukla, Anthony J. St. Leger, Tammie L. Keadle +2 more

Synthetic Heparanase Inhibitors Can Prevent Herpes Simplex Viral Spread

Angewandte Chemie(2023)10.1002/ange.202309838

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0DataRank · unranked

0 citations

Tejabhiram Yadavalli, Francesco Palmieri, Seino A. K. Jongkees, Luca Unione, Deepak Shukla +2 more

Rapid NETosis Is an Effector Mechanism to Combat Ocular Herpes Infection

Investigative Ophthalmology & Visual Science(2024)10.1167/iovs.65.6.36

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10 citations

Hemant P. Borase, Satyashree Gagan, Pankaj Sharma, Divya Kapoor, Tejabhiram Yadavalli +5 more

UVB induced reactivation leads to HSV1 in the corneas of virtually all latently infected mice and requires STING to develop corneal disease

Scientific Reports(2024)10.1038/s41598-024-52597-0

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9 citations

Alexis Hartman, Nadia Sirajuddin, Deepak Shukla, Anthony J. St. Leger, Tammie L. Keadle +2 more

Emerging drugs for the treatment of herpetic keratitis

Expert Opinion on Emerging Drugs(2024)10.1080/14728214.2024.2339899

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8 citations

Pankaj Sharma, Deepak Shukla, Divya Kapoor

Exploring Heparanase Levels in Tears: Insights From Herpes Simplex Virus-1 Keratitis Patients and Animal Studies

Investigative Ophthalmology & Visual Science(2024)10.1167/iovs.65.3.7

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8 citations

Agimanailiu Khapuinamai, Divya Kapoor, Pankaj Sharma, Tejabhiram Yadavalli, Joveeta Joseph +3 more

HerpDock: A GUI-based gateway to HSV-1 molecular docking insights

Computational and Structural Biotechnology Journal(2024)10.1016/j.csbj.2024.10.013

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1 citations

Divya Kapoor, Deepak Shukla, Sudhanshu Singh

Co-Expression of Niemann-Pick Type C1-Like1 (NPC1L1) with ACE2 Receptor Synergistically Enhances SARS-CoV-2 Entry and Fusion

Biomedicines(2024)10.3390/biomedicines12040821

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3 citations

Nicole Cast, Shalini Udawatte, Kabita Adhikari, Shannon Harger Payen, Subhash C. Verma +4 more

Heparanase 2 Modulation Inhibits HSV-2 Replication by Regulating Heparan Sulfate

Viruses(2024)10.3390/v16121832

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1 citations

Ipsita Volety, Farreh Qatanani, Deepak Shukla, James Hopkins

Oral SARS‐CoV‐2 Infection and Risk for Long Covid

Reviews in Medical Virology(2025)10.1002/rmv.70029

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16 citations

Kristelle J. Capistrano, Heba Hussein, Avin Hafedi, Deepak Shukla, Afsar R. Naqvi +1 more

Clinical strategies to prevent recurrence of Herpes simplex and Herpes zoster following ocular surgery: A comprehensive review with practical guidelines

Survey of Ophthalmology(2025)10.1016/j.survophthal.2025.02.002

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5 citations

Bijan Samavat, Karen Lee, Sima Sheikhghomi, Kasra Cheraghpour, Deepak Shukla +4 more

Antagonizing Viral MicroRNAs Reduces Ocular HSV-1 Pathogenesis and Enhances Mucosal Immune Homeostasis

Investigative Ophthalmology & Visual Science(2025)10.1167/iovs.66.12.16

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5 citations

Raza Ali Naqvi, Hemant P. Borase, Araceli Valverde, Afsar R. Naqvi, Deepak Shukla +1 more

Akt isoform specificity drives intrinsic immune regulation during HSV-1 infection

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2504962122

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3 citations

Chandrashekhar D. Patil, Hemant P. Borase, Deepak Shukla, Rahul K. Suryawanshi

Herpesvirus Simplex Virus‐1 Exploits Inflammation to Infect Periodontal Stem Cells and Disrupt Lineage Commitment

Journal of Periodontal Research(2025)10.1111/jre.70022

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6 citations

Raza Ali Naqvi, Y M Chen, Alireza Moshaverinia, Anne George, Deepak Shukla +5 more

Dysregulation of Cell Signaling by SARS-CoV-2

Trends in Microbiology(2020)10.1016/j.tim.2020.12.007

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94 citations

Raghuram Koganti, Alex Agelidis, Chandrashekhar D. Patil, Deepak Shukla, Rahul K. Suryawanshi

Efficacy, bioavailability, and intracellular delivery of nanoparticle based drug encapsulated carbon for antiviral therapy

Scientific Reports(2025)10.1038/s41598-025-15356-3

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0 citations

Fatima Bobat, Tejabhiram Yadavalli, Deepak Shukla, David Bin-Chia Wu