Justin D. Silverman

ORCID: 0000-0002-3063-2098

Also affiliated with Penn State Milton S. Hershey Medical Center

Biochemistry, Genetics and Molecular BiologyMedicineMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Changes in the type 2 diabetes gut mycobiome associate with metformin treatment across populations”.

Changes in the type 2 diabetes gut mycobiome associate with metformin treatment across populations

mBio(2024)10.1128/mbio.00169-24

N/A

0.423DataRank · unranked

9 citations

Michelle Pistner Nixon, Justin D. Silverman, Yuhong Luo, Frank J. Gonzalez, Ilze Elbere +5 more

Explicit Scale Simulation for analysis of RNA-sequencing count data with ALDEx2

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf108

N/A

0.325DataRank · unranked

7 citations

Michelle Pistner Nixon, Justin D. Silverman, Gregory B. Gloor

Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture

mSystems(2020)10.1128/msystems.00864-19

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0DataRank · unranked

62 citations

Rachael J. Bloom, Justin D. Silverman, Heather K. Durand, Sharon Jiang, Anchi Wu +5 more

Measuring and mitigating PCR bias in microbiota datasets

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009113

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0DataRank · unranked

120 citations

Rachael J. Bloom, Sharon Jiang, Heather K. Durand, Eric P. Dallow, Sayan Mukherjee +2 more

Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.26.450023

N/A

0DataRank · unranked

14 citations

Max M. Villa, Heather K. Durand, Sharon Jiang, Eric P. Dallow, Brianna L. Petrone +4 more

Metformin modulates the gut microbiome in broiler breeder hens

Frontiers in Physiology(2022)10.3389/fphys.2022.1000144

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0DataRank · unranked

6 citations

Evelyn A. Weaver, Connie J. Rogers, Justin D. Silverman, R. Ramesh, Erika Ganda +1 more

Phosphorylation barcodes direct biased chemokine signaling at CXCR3

Cell chemical biology(2023)10.1016/j.chembiol.2023.03.006

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0DataRank · unranked

35 citations

Jeffrey S. Smith, Tujin Shi, Tomasz Maciej Stępniewski, Chia‐Feng Tsai, Christopher Cole Honeycutt +19 more

Addressing erroneous scale assumptions in microbe and gene set enrichment analysis

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011659

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0DataRank · unranked

12 citations

Michelle Pistner Nixon, Justin D. Silverman, Kyle C. McGovern

Changes in the Type 2 diabetes gut mycobiome associate with metformin treatment across populations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.25.542255

N/A

0DataRank · unranked

1 citations

Michelle Pistner Nixon, Justin D. Silverman, Yuhong Luo, Frank J. Gonzalez, Ilze Elbere +5 more

Investigating antibiotic free feed additives for growth promotion in poultry: effects on performance and microbiota

Poultry Science(2024)10.1016/j.psj.2024.103604

N/A

0DataRank · unranked

33 citations

Sophia M. Kenney, Emily Van Syoc, Stephanie Bierly, Francisco Dini‐Andreote, Justin D. Silverman +3 more

From pre-test and post-test probabilities to medical decision making

BMC Medical Informatics and Decision Making(2024)10.1186/s12911-024-02610-3

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0DataRank · unranked

6 citations

Farhani Momotaz, Claire Smith, Jeffrey S. Smith, Mark Sendak, Christopher R. Polage +2 more

Use of intrauterine dextrose as an alternative to systemic antibiotics for treatment of clinical metritis in dairy cattle: a microbiome perspective

Frontiers in Veterinary Science(2024)10.3389/fvets.2024.1478288

N/A

0DataRank · unranked

3 citations

Emily Van Syoc, Asha M. Miles, Julia Hamilton, Marcela Martinez, S. Bas +4 more

Beyond Normalization: Incorporating Scale Uncertainty in Microbiome and Gene Expression Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.01.587602

N/A

0DataRank · unranked

11 citations

Gregory B. Gloor, Justin D. Silverman, Michelle Pistner Nixon

From Pre-test and Post-test Probabilities to Medical Decision Making

medRxiv(2024)10.1101/2024.02.14.24302820

N/A

0DataRank · unranked

0 citations

Farhani Momotaz, Claire Smith, Jeffrey S. Smith, Mark Sendak, Christopher R. Polage +2 more

Incorporating scale uncertainty in microbiome and gene expression analysis as an extension of normalization

Genome biology(2025)10.1186/s13059-025-03609-3

N/A

0DataRank · unranked

9 citations

Gregory B. Gloor, Justin D. Silverman, Michelle Pistner Nixon

Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice

Cell Reports(2025)10.1016/j.celrep.2025.115827

N/A

0DataRank · unranked

4 citations

Seoyoung Son, Deniz Parmaksiz, Hannah Kline, Rebecca Betty, Yuan-Ting Wu +10 more

Uncertainty Modeling Outperforms Machine Learning for Microbiome Data Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.12.675956

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0DataRank · unranked

3 citations

Manan Saxena, Nicole A. Lazar, Justin D. Silverman, Maxwell A. Konnaris

Corrigendum: Use of intrauterine dextrose as an alternative to systemic antibiotics for treatment of clinical metritis in dairy cattle: a microbiome perspective

Frontiers in Veterinary Science(2025)10.3389/fvets.2025.1596455

N/A

0DataRank · unranked

1 citations

Emily Van Syoc, Asha M. Miles, Julia Hamilton, Marcela Martinez, S. Bas +4 more

Naught all zeros in sequence count data are the same

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.09.014

N/A

0DataRank · unranked

190 citations

Kimberly Roche, Sayan Mukherjee, Lawrence A. David, Justin D. Silverman

Infection risk of rituximab monotherapy versus combination therapy with rituximab and mycophenolic acid in systemic sclerosis: A retrospective cohort study

Journal of the American Academy of Dermatology(2025)10.1016/j.jaad.2025.01.054

N/A

0DataRank · unranked

0 citations

Katherine Nabel Smith, Emily M. Meara, Mi Jin Cho, Justin D. Silverman, Avery LaChance +2 more

Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition

mBio(2020)10.1128/mbio.00914-20

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0DataRank · unranked

100 citations

Justin D. Silverman, Holly K. Dressman, Zhengzheng Wei, Eric P. Dallow, Sarah Armstrong +4 more