Bree Cummins

Also affiliated with Montana State University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum”.

An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum

Science(2020)10.1126/science.aba4357

N/A

0DataRank · unranked

92 citations

Francis C. Motta, Garima Chopra, J. Kathleen Moch, Robert R. Nerem, Bree Cummins +8 more

Using extremal events to characterize noisy time series

Journal of Mathematical Biology(2020)10.1007/s00285-020-01471-4

N/A

0DataRank · unranked

10 citations

Bree Cummins, Robert R. Nerem, Lauren M. Smith, Steven B. Haase, Tomas Gedeon +1 more

Multistability in the epithelial-mesenchymal transition network

BMC Bioinformatics(2020)10.1186/s12859-020-3413-1

N/A

0DataRank · unranked

43 citations

Bree Cummins, Tomas Gedeon, Ying Xin

Joint realizability of monotone Boolean functions

Theoretical Computer Science(2022)10.1016/j.tcs.2022.04.045

N/A

0DataRank · unranked

16 citations

Bree Cummins, Tomas Gedeon, Peter Crawford-Kahrl

Modeling Transport Regulation in Gene Regulatory Networks

Bulletin of Mathematical Biology(2022)10.1007/s11538-022-01035-1

N/A

0DataRank · unranked

6 citations

Bree Cummins, William Duncan, Tomas Gedeon, Erika Fox

Experimental guidance for discovering genetic networks through hypothesis reduction on time series

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010145

N/A

0DataRank · unranked

3 citations

Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia A. Campione, Marcio Gameiro +4 more

Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes

BMC Bioinformatics(2022)10.1186/s12859-022-04627-9

N/A

0DataRank · unranked

5 citations

Robert C. Moseley, Bree Cummins, Anastasia Deckard, Steven B. Haase, Francis C. Motta

Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation

SIAM Journal on Applied Dynamical Systems(2022)10.1137/21m1456832

N/A

0DataRank · unranked

4 citations

Marcio Gameiro, Tomas Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang +1 more

Highly-Automated, High-Throughput Replication of Yeast-based Logic Circuit Design Assessments

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.31.493627

N/A

0DataRank · unranked

4 citations

Robert C. Moseley, Nicholas Roehner, Bree Cummins, Justin D. Vrana, Katie J. Clowers +31 more

Experimental Guidance for Discovering Genetic Networks through Iterative Hypothesis Reduction on Time Series

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489981

N/A

0DataRank · unranked

0 citations

Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia A. Campione, Tomas Gedeon +3 more

Assessing biological network dynamics: Comparing numerical simulations with analytical decomposition of parameter space

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.31.506131

N/A

0DataRank · unranked

0 citations

William Duncan, Mohammed Adil Ibrahim, Mohit Kumar Jolly, Bree Cummins, Tomas Gedeon +1 more

Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space

npj Systems Biology and Applications(2023)10.1038/s41540-023-00289-2

N/A

0DataRank · unranked

6 citations

William Duncan, Mohammed Adil Ibrahim, Mohit Kumar Jolly, Bree Cummins, Tomas Gedeon +1 more

A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets

Mathematical Biosciences(2023)10.1016/j.mbs.2023.109102

N/A

0DataRank · unranked

4 citations

Bree Cummins, Robert C. Moseley, Marcio Gameiro, Steven B. Haase, Julian C. Fox

A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets

arXiv (Cornell University)(2023)10.48550/arxiv.2302.12946

N/A

0DataRank · unranked

0 citations

Bree Cummins, Robert C. Moseley, Marcio Gameiro, Steven B. Haase, Julian C. Fox

Oscillator death in coupled biochemical oscillators

Mathematics of Control Signals and Systems(2023)10.1007/s00498-023-00348-3

N/A

0DataRank · unranked

0 citations

Bree Cummins, Tomas Gedeon

Multistability and predominant hybrid phenotypes in a four node mutually repressive network of Th1/Th2/Th17/Treg differentiation

npj Systems Biology and Applications(2024)10.1038/s41540-024-00433-6

N/A

0DataRank · unranked

12 citations

Elizabeth Andreas, Harshavardhan BV, Kaushal Grover, Vivek Raj Singh, Kishore Hari +5 more

Subnetwork inclusion and switching of multilevel Boolean networks preserve parameter graph structure and dynamics

Frontiers in Applied Mathematics and Statistics(2024)10.3389/fams.2024.1286957

N/A

0DataRank · unranked

1 citations

Bree Cummins, Tomas Gedeon, William Duncan

Accounting for correlation and censoring in Bayesian Network Scale-up Method Models

Social Networks(2025)10.1016/j.socnet.2025.07.005

N/A

0DataRank · unranked

1 citations

Bree Cummins, Ian Laga, Benjamin Vogel