Tavis K. Anderson

Also affiliated with United States Department of Agriculture, National Animal Disease Center

MedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 44 papers. Top paper: “Refining PRRSV-2 genetic classification based on global ORF5 sequences and investigation of their geographic distributions and temporal changes”.

Refining PRRSV-2 genetic classification based on global ORF5 sequences and investigation of their geographic distributions and temporal changes

Microbiology Spectrum(2023)10.1128/spectrum.02916-23

N/A

2.7DataRank · unranked

125 citations

Tavis K. Anderson, Igor A. D. Paploski, Kimberly VanderWaal, Phillip C. Gauger, Karen Krueger +4 more

Characterization of a 2016-2017 Human Seasonal H3 Influenza A Virus Spillover Now Endemic to U.S. Swine

mSphere(2022)10.1128/msphere.00809-21

N/A

0.964DataRank · unranked

24 citations

Michael Zeller, Carine K. Souza, Tavis K. Anderson, Amy L. Vincent, Karen M. Harmon +4 more

Modulation of human-to-swine influenza a virus adaptation by the neuraminidase low-affinity calcium-binding pocket

Communications Biology(2024)10.1038/s42003-024-06928-6

N/A

0.347DataRank · unranked

8 citations

Brittany Seibert, Brianna Cowan, C. Joaquín Cáceres, L. Claire Gay, Flavio Cargnin Faccin +5 more

Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.07.238279

N/A

0DataRank · unranked

3 citations

Phillip C. Gauger, Zebulun Arendsee, Carine K. Souza, Amy L. Vincent, Tavis K. Anderson +1 more

Machine Learning Prediction and Experimental Validation of Antigenic Drift in H3 Influenza A Viruses in Swine

mSphere(2021)10.1128/msphere.00920-20

N/A

0DataRank · unranked

29 citations

Phillip C. Gauger, Zebulun Arendsee, Carine K. Souza, Amy L. Vincent, Tavis K. Anderson +1 more

Evolution and Antigenic Advancement of N2 Neuraminidase of Swine Influenza A Viruses Circulating in the United States following Two Separate Introductions from Human Seasonal Viruses

Journal of Virology(2021)10.1128/jvi.00632-21

N/A

0DataRank · unranked

19 citations

Tavis K. Anderson, Jennifer Chang, Jefferson Santos, Daniel R. Pérez, Nicola S. Lewis +2 more

Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.17.469008

N/A

0DataRank · unranked

3 citations

Michael Zeller, Bryan S. Kaplan, Carine K. Souza, Phillip C. Gauger, Amy L. Vincent +2 more

Antigenic Characterization and Pandemic Risk Assessment of North American H1 Influenza A Viruses Circulating in Swine

Microbiology Spectrum(2022)10.1128/spectrum.01781-22

N/A

0DataRank · unranked

20 citations

Tavis K. Anderson, J. Brian Kimble, Jennifer Chang, Sara Lopes, Carine K. Souza +7 more

RF-Net 2: fast inference of virus reassortment and hybridization networks

Bioinformatics(2022)10.1093/bioinformatics/btac075

N/A

0DataRank · unranked

12 citations

Sanket Wagle, Tavis K. Anderson, Oliver Eulenstein, Alexey Markin

smot: a python package and CLI tool for contextualphylogenetic subsampling

The Journal of Open Source Software(2022)10.21105/joss.04193

N/A

0DataRank · unranked

19 citations

Amy L. Vincent, Tavis K. Anderson, Zebulun Arendsee

Interspecies transmission from pigs to ferrets of antigenically distinct swine H1 influenza A viruses with loss in reactivity to human vaccine virus antisera as measures of relative zoonotic risk

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507661

N/A

0DataRank · unranked

5 citations

Carine K. Souza, Tavis K. Anderson, Zebulun Arendsee, David E. Hufnagel, Katharine M. Young +4 more

Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.15.520479

N/A

0DataRank · unranked

5 citations

Giovana Ciacci Zanella, Zebulun Arendsee, Jianqiang Zhang, Karen Krueger, Phillip C. Gauger +3 more

classLog: Logistic regression for the classification of genetic sequences

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.15.503907

N/A

0DataRank · unranked

1 citations

Zebulun Arendsee, Gavin J. D. Smith, Tavis K. Anderson, Michael Zeller

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507613

N/A

0DataRank · unranked

1 citations

Sanket Wagle, Siddhant Grover, Amy L. Vincent, Oliver Eulenstein, Tavis K. Anderson +1 more

Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.18.517097

N/A

0DataRank · unranked

1 citations

Katharine M. Young, Zebulun Arendsee, L. Claire Gay, C. Joaquín Cáceres, Daniela S. Rajão +4 more

Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential

PLoS Pathogens(2023)10.1371/journal.ppat.1011476

N/A

0DataRank · unranked

61 citations

Giovana Ciacci Zanella, Zebulun Arendsee, Jianqiang Zhang, Karen Krueger, Phillip C. Gauger +3 more

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny

Systematic Biology(2023)10.1093/sysbio/syad028

N/A

0DataRank · unranked

50 citations

Sanket Wagle, Siddhant Grover, Amy L. Vincent, Oliver Eulenstein, Tavis K. Anderson +1 more

Human-to-swine introductions and onward transmission of 2009 H1N1 pandemic influenza viruses in Brazil

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1243567

N/A

0DataRank · unranked

26 citations

Caroline Tochetto, Tavis K. Anderson, Danielle Gava, Vanessa Haach, Maurício Egídio Cantão +3 more

Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in influenza A virus from North American swine

Virus Evolution(2023)10.1093/ve/vead015

N/A

0DataRank · unranked

18 citations

Katharine M. Young, Zebulun Arendsee, L. Claire Gay, C. Joaquín Cáceres, Daniela S. Rajão +4 more

classLog: Logistic regression for the classification of genetic sequences

Frontiers in Virology(2023)10.3389/fviro.2023.1215012

N/A

0DataRank · unranked

3 citations

Zebulun Arendsee, Gavin J. D. Smith, Tavis K. Anderson, Michael Zeller

Phylogenetic diversity statistics for all clades in a phylogeny

Bioinformatics(2023)10.1093/bioinformatics/btad263

N/A

0DataRank · unranked

3 citations

Alexey Markin, Tavis K. Anderson, Oliver Eulenstein, Siddhant Grover

Antigenic and genetic diversity of H1 and H3 influenza A viruses in swine in Brazil

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.01.569635

N/A

0DataRank · unranked

3 citations

Tavis K. Anderson, Rejane Schaefer, Caroline Tochetto, Danielle Gava, Maurício Egídio Cantão +4 more

Divergent Pathogenesis and Transmission of Highly Pathogenic Avian Influenza A(H5N1) in Swine

Emerging infectious diseases(2024)10.3201/eid3004.231141

N/A

0DataRank · unranked

47 citations

Amy L. Vincent, Alexandra Buckley, Tavis K. Anderson, Mia Kim Torchetti, Nichole Hines Bergeson +3 more

Reverse zoonosis of the 2022–2023 human seasonal H3N2 detected in swine

npj Viruses(2024)10.1038/s44298-024-00042-4

N/A

0DataRank · unranked

18 citations

Daniel Carnevale de Almeida Moraes, Giovana Ciacci Zanella, Carine K. Souza, Tavis K. Anderson, Amy L. Vincent +2 more

Amino acid 138 in the HA of a H3N2 subtype influenza A virus increases affinity for the lower respiratory tract and alveolar macrophages in pigs

PLoS Pathogens(2024)10.1371/journal.ppat.1012026

N/A

0DataRank · unranked

15 citations

Brittany Seibert, Brianna Cowan, Ana Luiza Soares Fraiha, Silvia Carnaccini, L. Claire Gay +7 more

Potential pandemic risk of circulating swine H1N2 influenza viruses

Nature Communications(2024)10.1038/s41467-024-49117-z

N/A

0DataRank · unranked

18 citations

Nicole C. Rockey, Andrea French, Ryan McBride, Kevin R. McCarthy, Lora H. Rigatti +15 more

Nucleoprotein reassortment enhanced transmissibility of H3 1990.4.a clade influenza A virus in swine

Journal of Virology(2024)10.1128/jvi.01703-23

N/A

0DataRank · unranked

10 citations

Giovana Ciacci Zanella, Brianna Cowan, C. Joaquín Cáceres, Daniela S. Rajão, Daniel R. Pérez +4 more

2018-2019 human seasonal H3N2 influenza A virus spillovers into swine with demonstrated virus transmission in pigs were not sustained in the pig population

Journal of Virology(2024)10.1128/jvi.00087-24

N/A

0DataRank · unranked

1 citations

Megan N. Thomas, Tavis K. Anderson, Michael Zeller, Phillip C. Gauger, Amy L. Vincent +1 more

Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.01.591751

N/A

0DataRank · unranked

113 citations

Carl R. Hutter, Alexey Markin, Megan Thomas, Kristina Lantz, Mary Lea Killian +22 more

2018-2019 human seasonal H3N2 influenza A virus spillovers into swine with demonstrated virus transmission in pigs were not sustained in the pig population

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.12.575431

N/A

0DataRank · unranked

4 citations

Megan N. Thomas, Tavis K. Anderson, Michael Zeller, Phillip C. Gauger, Amy L. Vincent +1 more

Active surveillance for influenza A virus in swine reveals within-farm reassortment and cocirculation of distinct subtypes and genetic clades

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.28.601245

N/A

0DataRank · unranked

2 citations

Garrett M. Janzen, Alexey Markin, Aditi Sharma, Kelly Hewitt, Ganwu Li +4 more

Potential pandemic risk of circulating swine H1N2 influenza viruses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574401

N/A

0DataRank · unranked

1 citations

Nicole C. Rockey, Kevin R. McCarthy, Andrea French, Meredith J. Shephard, Ryan McBride +15 more

PRRSV-2 variant classification: a dynamic nomenclature for enhanced monitoring and surveillance

mSphere(2025)10.1128/msphere.00709-24

N/A

0DataRank · unranked

20 citations

Nakarin Pamornchainavakul, Mariana Kikuti, Jianqiang Zhang, Michael Zeller, Giovani Trevisan +11 more

Phylo-rs: an extensible phylogenetic analysis library in rust

BMC Bioinformatics(2025)10.1186/s12859-025-06234-w

N/A

0DataRank · unranked

5 citations

Tavis K. Anderson, Alexey Markin, Oliver Eulenstein, Sriram Vijendran

Quantifying the zoonotic risk profile of European influenza A viruses in swine from 2010 to 2020 inclusive

Journal of Virology(2025)10.1128/jvi.00306-25

N/A

0DataRank · unranked

4 citations

Sara Lopes, Gaëlle Simon, Zebulun Arendsee, Kuan‐Fu Chen, Chiara Chiapponi +17 more

Active surveillance for influenza A virus in swine reveals within-farm reassortment and cocirculation of distinct subtypes and genetic clades

Veterinary Microbiology(2025)10.1016/j.vetmic.2025.110681

N/A

0DataRank · unranked

4 citations

Garrett M. Janzen, Alexey Markin, Aditi Sharma, Kelly Hewitt, Ganwu Li +4 more

Transmission and Pathologic Findings of Divergent Human Seasonal H1N1pdm09 Influenza A Viruses Following Spillover Into Pigs in the United States

Influenza and Other Respiratory Viruses(2025)10.1111/irv.70128

N/A

0DataRank · unranked

3 citations

Alexey Markin, Megan N. Thomas, Celeste A. Snyder, Carine K. Souza, Bailey Arruda +3 more

Exploring genetic signatures of zoonotic influenza A virus at the swine–human interface with phylogenetic and ancestral sequence reconstruction

Virus Evolution(2025)10.1093/ve/veaf028

N/A

0DataRank · unranked

1 citations

Marta Maria Ciucani, Jakob Nybo Nissen, Tavis K. Anderson, Anders Gorm Pedersen, Ramona Trebbien +1 more

Eurasian 1C swine influenza A virus exhibits high pandemic risk traits

Emerging Microbes & Infections(2025)10.1080/22221751.2025.2492210

N/A

0DataRank · unranked

1 citations

Carine K. Souza, Nicole C. Rockey, Meredith Shephard, Giovana Ciacci Zanella, Bailey Arruda +12 more

Diverse Genomic Landscape of Swine Influenza A Virus in England (2014–2021)

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.28.650978

N/A

0DataRank · unranked

0 citations

Alexander M. P. Byrne, Helen Everett, Scott M. Reid, Susanna Williamson, Tavis K. Anderson +5 more

Influenza A Virus Field Surveillance at a Swine-Human Interface

mSphere(2020)10.1128/msphere.00822-19

N/A

0DataRank · unranked

56 citations

Matthew W. Keller, Malania M. Wilson, Jacqueline M. Nolting, Tavis K. Anderson, Amy L. Vincent +8 more

SmartHisto: Bayesian Active Learning for Histology Images

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.681994

N/A

0DataRank · unranked

0 citations

Bailey Arruda, Tavis K. Anderson, Oliver Eulenstein, Sriram Vijendran

Aerosol Transmission from Infected Swine to Ferrets of an H3N2 Virus Collected from an Agricultural Fair and Associated with Human Variant Infections

Journal of Virology(2020)10.1128/jvi.01009-20

N/A

0DataRank · unranked

26 citations

J. Brian Kimble, Jennifer Chang, Tavis K. Anderson, Phillip C. Gauger, Alicia Janas-Martindale +4 more

Swine Influenza A Viruses and the Tangled Relationship with Humans

Cold Spring Harbor Perspectives in Medicine(2020)10.1101/cshperspect.a038737

N/A

0DataRank · unranked

215 citations

Jennifer Chang, Zebulun Arendsee, Divya Venkatesh, Carine K. Souza, J. Brian Kimble +4 more