🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Tarcisio Mendes de Farias

SIB Swiss Institute of Bioinformatics

ORCID: 0000-0002-3175-5372

Also affiliated with Defence Scientific Information & Documentation Centre

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.7Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Nucleic Acids Research(2020)10.1093/nar/gkaa793
Top 5%
4.2DataRank
Top 5%204 citations

Julien Roux, Anne Niknejad, Aurélie Comte, Sara Simões Costa, Tarcisio Mendes de Farias +18 more

Papers

Driven by 9 papers — median percentile 69. Top paper: “The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals”.

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Nucleic Acids Research(2020)10.1093/nar/gkaa793
Top 5%
4.2DataRank
Top 5%204 citations

Julien Roux, Anne Niknejad, Aurélie Comte, Sara Simões Costa, Tarcisio Mendes de Farias +18 more

Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools

Nucleic Acids Research(2024)10.1093/nar/gkae1118
Top 23%
0.868DataRank
Top 23%33 citations

Alessandro Brandulas-Cammarata, Sara Carsanaro, Harald Detering, Wan‐Ting Huang, Sagane Joye +8 more

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.119560
Top 38%
0.504DataRank
Top 38%9 citations

Julien Roux, Anne Niknejad, Aurélie Comte, Sara Simões Costa, Tarcisio Mendes de Farias +18 more

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications

arXiv (Cornell University)(2024)10.48550/arxiv.2410.06010
Top 70%
0.165DataRank
Top 70%2 citations

Vincent Emonet, Adrian Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan Bridge +12 more

LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs

arXiv (Cornell University)(2024)10.48550/arxiv.2410.06062
N/A
0DataRank · unranked
6 citations

Jerven T. Bolleman, Séverine Duvaud, Tarcisio Mendes de Farias, Ana Claudia Sima, Vincent Emonet

A large collection of bioinformatics question–query pairs over federated knowledge graphs: methodology and applications

GigaScience(2025)10.1093/gigascience/giaf045
N/A
0DataRank · unranked
3 citations

Vincent Emonet, Adrian Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan Bridge +12 more

Ten Years of Collaborative Progress in the Quest for Orthologs

Molecular Biology and Evolution(2021)10.1093/molbev/msab098
N/A
0DataRank · unranked
57 citations

Ingo Ebersberger, Shawn E. McGlynn, Natasha Glover, Tomohiro Mochizuki, Mateus Patrício +40 more

Lessons learned to boost a bioinformatics knowledge base reusability, the Bgee experience

GigaScience(2022)10.1093/gigascience/giad058
N/A
0DataRank · unranked
7 citations

Julien Wollbrett, Marc Robinson‐Rechavi, Frederic Bastian, Tarcisio Mendes de Farias

Lessons learned to boost a bioinformatics knowledge base reusability, the Bgee experience

arXiv (Cornell University)(2023)10.48550/arxiv.2303.12329
N/A
0DataRank · unranked
0 citations

Julien Wollbrett, Marc Robinson‐Rechavi, Frederic Bastian, Tarcisio Mendes de Farias