Jeffrey P. Spence

Also affiliated with Institute of Human Genetics, Stanford University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.6Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

Nature(2016)10.1038/nature18964

Top 2%

8.6DataRank

Top 2%1785 citations

Alexandra P. Lewis, Mark Lipson, Iain Mathieson, Madhusudan Gujral, Fernando Racimo +86 more

Papers

Driven by 34 papers — median percentile 98. Top paper: “The Simons Genome Diversity Project: 300 genomes from 142 diverse populations”.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

Nature(2016)10.1038/nature18964

Top 2%

8.6DataRank

Top 2%1785 citations

Alexandra P. Lewis, Mark Lipson, Iain Mathieson, Madhusudan Gujral, Fernando Racimo +86 more

Shared heritability of human face and brain shape

Nature Genetics(2021)10.1038/s41588-021-00827-w

N/A

2.4DataRank · unranked

110 citations

Yoeri Sleyp, Hanne Hoskens, Karlijne Indencleef, Jeffrey P. Spence, Rose Bruffaerts +14 more

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y

N/A

0.692DataRank · unranked

17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.05.014

N/A

0.663DataRank · unranked

82 citations

Shaila Musharoff, Jeffrey P. Spence, Harold Pimentel, Catherine Tcheandjieu, Hakhamanesh Mostafavi +19 more

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.30.502157

N/A

0.190DataRank · unranked

2 citations

Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang +40 more

Predicting the effect of CRISPR-Cas9-based epigenome editing

eLife(2023)10.7554/elife.92991

N/A

0.170DataRank · unranked

2 citations

Alan Cabrera, Jeffrey P. Spence, Jacob Goell, Selvalakshmi S Anand, Isaac B. Hilton +2 more

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.29.514266

N/A

0DataRank · unranked

10 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Systematic differences in discovery of genetic effects on gene expression and complex traits

Nature Genetics(2023)10.1038/s41588-023-01529-1

N/A

0DataRank · unranked

338 citations

Jeffrey P. Spence, Sahin Naqvi, Jonathan K. Pritchard, Hakhamanesh Mostafavi

Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation

Cell(2023)10.1016/j.cell.2023.01.042

N/A

0DataRank · unranked

98 citations

Jeffrey P. Spence, Yuanqing Feng, Matthew E.B. Hansen, Jonathan Terhorst, Márcia Holsbach Beltrame +14 more

Stable population structure in Europe since the Iron Age, despite high mobility

eLife(2023)10.7554/elife.79714

N/A

0DataRank · unranked

77 citations

Clemens L. Weiß, Ziyue Gao, Susanna Sawyer, Victoria Oberreiter, Hannah M. Moots +92 more

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

eLife(2023)10.7554/elife.84874

N/A

0DataRank · unranked

55 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Scaling the discrete-time Wright–Fisher model to biobank-scale datasets

Genetics(2023)10.1093/genetics/iyad168

N/A

0DataRank · unranked

25 citations

Tony Zeng, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Jeffrey P. Spence

Bayesian estimation of gene constraint from an evolutionary model with gene features

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.19.541520

N/A

0DataRank · unranked

18 citations

Jeffrey P. Spence, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Tony Zeng

Diversity of ribosomes at the level of rRNA variation associated with human health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526360

N/A

0DataRank · unranked

13 citations

Teodorus Theo Susanto, Xin Sui, Jeffrey P. Spence, Ramya Rangan, Naomi R. Genuth +5 more

Bayesian estimation of gene constraint from an evolutionary model with gene features

Research Square(2023)10.21203/rs.3.rs-3012879/v1

N/A

0DataRank · unranked

7 citations

Jeffrey P. Spence, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Tony Zeng

Predicting the effect of CRISPR-Cas9-based epigenome editing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560674

N/A

0DataRank · unranked

5 citations

Alan Cabrera, Jeffrey P. Spence, Jacob Goell, Selvalakshmi Selvaraj Anand, Isaac B. Hilton +2 more

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

(2023)10.7554/elife.84874.1

N/A

0DataRank · unranked

2 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Author Response: Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

(2023)10.7554/elife.84874.1.sa0

N/A

0DataRank · unranked

0 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Scaling the Discrete-time Wright Fisher model to biobank-scale datasets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.19.541517

N/A

0DataRank · unranked

0 citations

Tony Zeng, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Jeffrey P. Spence

Reviewer #1 (Public Review): Predicting the effect of CRISPR-Cas9-based epigenome editing

(2023)10.7554/elife.92991.1.sa1

N/A

0DataRank · unranked

0 citations

Alan Cabrera, Jeffrey P. Spence, Isaac B. Hilton, Yun S. Song, Sanjit Singh Batra

grenedalf: population genetic statistics for the next generation of pool sequencing

Bioinformatics(2024)10.1093/bioinformatics/btae508

N/A

0DataRank · unranked

42 citations

Jeffrey P. Spence, Moisés Expósito‐Alonso, Lucas Czech

Diversity of ribosomes at the level of rRNA variation associated with human health and disease

Cell Genomics(2024)10.1016/j.xgen.2024.100629

N/A

0DataRank · unranked

38 citations

Teodorus Theo Susanto, Xin Sui, Jeffrey P. Spence, Ramya Rangan, Naomi R. Genuth +5 more

Characterizing selection on complex traits through conditional frequency spectra

Genetics(2024)10.1093/genetics/iyae210

N/A

0DataRank · unranked

14 citations

Clemens L. Weiß, Huisheng Zhu, Hakhamanesh Mostafavi, Yuval B. Simons, Jeffrey P. Spence +2 more

A simple and flexible test of sample exchangeability with applications to statistical genomics

The Annals of Applied Statistics(2024)10.1214/23-aoas1817

N/A

0DataRank · unranked

2 citations

Jeffrey P. Spence, Yun S. Song, Alan J. Aw

Specificity, length, and luck: How genes are prioritized by rare and common variant association studies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.12.628073

N/A

0DataRank · unranked

16 citations

Hakhamanesh Mostafavi, Mineto Ota, Nikhil Milind, Tamara Gjorgjieva, Courtney J. Smith +4 more

Conditional frequency spectra as a tool for studying selection on complex traits in biobanks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.15.599126

N/A

0DataRank · unranked

8 citations

Clemens L. Weiß, Huisheng Zhu, Hakhamanesh Mostafavi, Yuval B. Simons, Jeffrey P. Spence +2 more

Investigating the Role of Neighborhood Socioeconomic Status and Germline Genetics on Prostate Cancer Risk

medRxiv(2024)10.1101/2024.07.31.24311312

N/A

0DataRank · unranked

0 citations

Jeffrey P. Spence, Jonathan K. Pritchard, Linda Kachuri, John S. Witte, Jonathan Judd

Estimation of demography and mutation rates from one million haploid genomes

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.07.008

N/A

0DataRank · unranked

7 citations

Jeffrey P. Spence, Michael D. Edge, Joshua G. Schraiber

Investigating the role of neighborhood socioeconomic status and germline genetics on prostate cancer risk

Human Genetics and Genomics Advances(2025)10.1016/j.xhgg.2025.100492

N/A

0DataRank · unranked

1 citations

Jeffrey P. Spence, Jonathan K. Pritchard, Linda Kachuri, John S. Witte, Jonathan Judd

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2025)10.1186/s13059-025-03494-w

N/A

0DataRank · unranked

0 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +45 more

Shared heritability of face and brain shape distinct from cognitive traits

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.269258

N/A

0DataRank · unranked

1 citations

Yoeri Sleyp, Hanne Hoskens, Karlijne Indencleef, Jeffrey P. Spence, Rose Bruffaerts +14 more

A simple and flexible test of sample exchangeability with applications to statistical genomics

arXiv (Cornell University)(2021)10.48550/arxiv.2109.15261

N/A

0DataRank · unranked

1 citations

Jeffrey P. Spence, Yun S. Song, Alan J. Aw

Genetic diversity loss in the Anthropocene

Science(2022)10.1126/science.abn5642

N/A

0DataRank · unranked

274 citations

Tom R. Booker, Lucas Czech, Lauren Gillespie, Shannon Hateley, Christopher C. Kyriazis +10 more

A flexible modeling and inference framework for estimating variant effect sizes from GWAS summary statistics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.18.488696

N/A

0DataRank · unranked

42 citations

Nicholas A. Sinnott-Armstrong, Themistocles L. Assimes, Jonathan K. Pritchard, Jeffrey P. Spence

Jeffrey P. Spence

Indexed papers

Top data-sharing exemplar

Papers