Víctor S. Batista

Computer ScienceNeuroscienceHealth Professions

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 43 papers. Top paper: “Regulation of MIF Enzymatic Activity by an Allosteric Site at the Central Solvent Channel”.

Regulation of MIF Enzymatic Activity by an Allosteric Site at the Central Solvent Channel

Cell chemical biology(2020)10.1016/j.chembiol.2020.05.001

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34 citations

Leepakshi Khurana, Anthony Ma, Erin Skeens, Krystle Reiss, Víctor S. Batista +3 more

The Effect of (−)-Epigallocatechin-3-Gallate on the Amyloid-β Secondary Structure

Biophysical Journal(2020)10.1016/j.bpj.2020.05.033

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35 citations

Julia Stockmann, Léon Beyer, Till Rudack, Andreas Nabers, James C. Gumbart +3 more

Allosteric Control of Enzyme Activity: From Ancient Origins to Recent Gene-Editing Technologies

Biochemistry(2020)10.1021/acs.biochem.0c00275

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8 citations

Víctor S. Batista, J. Patrick Loria, Krystle Reiss

High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium, Synechocystis sp. PCC 6803

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2116765118

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113 citations

Jimin Wang, Jinchan Liu, David A. Flesher, Krystle Reiss, Hao-Li Huang +7 more

A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101061

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25 citations

Krystle Reiss, Dilip Shah, R. Manjula, Brandon Allen, Eva Murphy +6 more

Quantitative assessment of chlorophyll types in cryo-EM maps of photosystem I acclimated to far-red light

BBA Advances(2021)10.1016/j.bbadva.2021.100019

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27 citations

Hao-Li Huang, Krystle Reiss, David A. Flesher, Víctor S. Batista, Donald A. Bryant +3 more

Distinct allosteric pathways in imidazole glycerol phosphate synthase from yeast and bacteria

Biophysical Journal(2021)10.1016/j.bpj.2021.11.2888

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16 citations

Aria Gheeraert, Andrea Piazzi, Víctor S. Batista, Ivan Rivalta, Federica Maschietto

Protein nanowires with tunable functionality and programmable self-assembly using sequence-controlled synthesis

Nature Communications(2022)10.1038/s41467-022-28206-x

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72 citations

Gunasheil Mandava, Sibel Ebru Yalcin, Pol Arranz‐Gibert, Peter Dahl, Catharine Shipps +10 more

Microbial biofilms as living photoconductors due to ultrafast electron transfer in cytochrome OmcS nanowires

Nature Communications(2022)10.1038/s41467-022-32659-5

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67 citations

Catharine Shipps, Matthew J. Guberman‐Pfeffer, Cong Shen, Vishok Srikanth, Jacob A. Spies +6 more

Structural Insights into Binding of Remdesivir Triphosphate within the Replication–Transcription Complex of SARS-CoV-2

Biochemistry(2022)10.1021/acs.biochem.2c00341

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16 citations

Yuanjun Shi, Krystle Reiss, Federica Maschietto, Elias Lolis, William H. Konigsberg +3 more

How to correct relative voxel scale factors for calculations of vector-difference Fourier maps in cryo-EM

Journal of Structural Biology(2022)10.1016/j.jsb.2022.107902

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13 citations

Jinchan Liu, Christopher J. Gisriel, Shenping Wu, Federica Maschietto, David A. Flesher +6 more

MptpA Kinetics Enhanced by Allosteric Control of an Active Conformation

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167540

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11 citations

Erik Zavala, Brandon Allen, J. Patrick Loria, Víctor S. Batista, Federica Maschietto

Insights into Binding of Single-Stranded Viral RNA Template to the Replication–Transcription Complex of SARS-CoV-2 for the Priming Reaction from Molecular Dynamics Simulations

Biochemistry(2022)10.1021/acs.biochem.1c00755

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15 citations

Yuanjun Shi, Krystle Reiss, Brandon Allen, Federica Maschietto, Elias Lolis +4 more

Translocation pause of remdesivir-containing primer/template RNA duplex within SARS-CoV-2’s RNA polymerase complexes

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.999291

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4 citations

Jimin Wang, Víctor S. Batista, Yuanjun Shi

Identification and mechanistic basis of non-ACE2 blocking neutralizing antibodies from COVID-19 patients with deep RNA sequencing and molecular dynamics simulations

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.1080964

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4 citations

Kyle W. East, Yuanjun Shi, Jinchan Liu, Federica Maschietto, Alfred Ayala +11 more

Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity

Nature Microbiology(2023)10.1038/s41564-022-01315-5

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130 citations

Matthew J. Guberman‐Pfeffer, Vishok Srikanth, Cong Shen, Fabian Giska, Kallol Gupta +5 more

HAC-Net: A Hybrid Attention-Based Convolutional Neural Network for Highly Accurate Protein–Ligand Binding Affinity Prediction

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00251

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71 citations

Rafael I. Brent, Víctor S. Batista, Gregory W. Kyro

Twisting and swiveling domain motions in Cas9 to recognize target DNA duplexes, make double-strand breaks, and release cleaved duplexes

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2022.1072733

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22 citations

Pablo R. Arantes, Mohd Ahsan, Souvik Sinha, Gregory W. Kyro, Federica Maschietto +6 more

Turning up the heat mimics allosteric signaling in imidazole-glycerol phosphate synthase

Nature Communications(2023)10.1038/s41467-023-37956-1

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17 citations

Uriel N. Morzan, Florentina Tofoleanu, Aria Gheeraert, Apala Chaudhuri, Gregory W. Kyro +6 more

Mapping N- to C-terminal allosteric coupling through disruption of a putative CD74 activation site in D-dopachrome tautomerase

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104729

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9 citations

Vinnie Widjaja, Gregory W. Kyro, Brandon Allen, Pragnya Das, Varsha Prahaladan +5 more

A quantitative assessment of (bacterio)chlorophyll assignments in the cryo-EM structure of the Chloracidobacterium thermophilum reaction center

Photosynthesis Research(2023)10.1007/s11120-023-01047-5

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7 citations

David A. Flesher, Zhuoran Long, Jinchan Liu, Jimin Wang, Donald A. Bryant +3 more

Substrate-independent activation pathways of the CRISPR-Cas9 HNH nuclease

Biophysical Journal(2023)10.1016/j.bpj.2023.11.005

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6 citations

Federica Maschietto, Tianyin Qiu, Pablo R. Arantes, Erin Skeens, Giulia Palermo +3 more

Valproate-coenzyme A conjugate blocks opening of receptor binding domains in the spike trimer of SARS-CoV-2 through an allosteric mechanism

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.01.014

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5 citations

Tianyin Qiu, Jimin Wang, Yuanjun Shi, Brandon Allen, George P. Lisi +3 more

Connected Component Analysis of Dynamical Perturbation Contact Networks

The Journal of Physical Chemistry B(2023)10.1021/acs.jpcb.3c04592

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5 citations

Claire Lesieur, Víctor S. Batista, Laurent Vuillon, Ivan Rivalta, Aria Gheeraert

MDiGest: A Python package for describing allostery from molecular dynamics simulations

The Journal of Chemical Physics(2023)10.1063/5.0140453

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28 citations

Brandon Allen, Gregory W. Kyro, Víctor S. Batista, Federica Maschietto

Triple-action inhibitory mechanism of allosteric TYK2-specific inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.09.561507

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2 citations

Víctor S. Batista, Christopher G. Bunick, Jimin Wang

Mechanism of Action of KL-50, a Novel Imidazotetrazine for the Treatment of Drug-Resistant Brain Cancers

ChemRxiv(2023)10.26434/chemrxiv-2023-zwj94

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1 citations

Anna Lo, Olga Fedorova, James L. Elia, Susan Gueble, Kingson Lin +15 more

Breaking a Molecular Scaling Relationship Using an Iron–Iron Fused Porphyrin Electrocatalyst for Oxygen Reduction

Journal of the American Chemical Society(2024)10.1021/jacs.3c08586

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32 citations

Jan Paul Menzel, Nicholas R. Armada, Edgar A. Reyes Cruz, Brent L. Nannenga, Víctor S. Batista +2 more

Quantum-to-Classical Neural Network Transfer Learning Applied to Drug Toxicity Prediction

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00432

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15 citations

Víctor S. Batista, Anthony M. Smaldone

Structure of a biohybrid photosystem I-platinum nanoparticle solar fuel catalyst

Nature Communications(2024)10.1038/s41467-024-53476-y

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13 citations

Tirupathi Malavath, Tianyin Qiu, Jan Paul Menzel, Víctor S. Batista, Gary W. Brudvig +2 more

ChemSpaceAL: An Efficient Active Learning Methodology Applied to Protein-Specific Molecular Generation

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.3c01456

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15 citations

Anton Morgunov, Rafael I. Brent, Víctor S. Batista, Gregory W. Kyro

Beyond the “spine of hydration”: Chiral SFG spectroscopy detects DNA first hydration shell and base pair structures

The Journal of Chemical Physics(2024)10.1063/5.0220479

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11 citations

Daniel Konstantinovsky, Ty Santiago, Pablo E. Videla, Matthew Tremblay, Luis Velarde +4 more

A salt bridge of the C‐terminal carboxyl group regulates PHPT1 substrate affinity and catalytic activity

Protein Science(2024)10.1002/pro.5009

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5 citations

Stephen Dansereau, Michael J. Burke, J.M. Lipchock, Federica Maschietto, Víctor S. Batista +2 more

Mechanism of Action of KL-50, a Candidate Imidazotetrazine for the Treatment of Drug-Resistant Brain Cancers

Journal of the American Chemical Society(2024)10.1021/jacs.3c06483

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7 citations

Anna Lo, Olga Fedorova, James L. Elia, Susan E. Gueble, Kingson Lin +13 more

Mutation-induced shift of the photosystem II active site reveals insight into conserved water channels

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107475

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6 citations

Jinchan Liu, Jimin Wang, Christopher J. Gisriel, Ke R Yang, Víctor S. Batista +3 more

Ultrahigh-mobility microbial cytochrome nanowires generate power from humidity

Research Square(2024)10.21203/rs.3.rs-4724466/v1

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2 citations

Jens Neu, Yangqi Gu, Catharine Shipps, Víctor S. Batista, Nikhil S. Malvankar +1 more

Beyond the "Spine of Hydration": Chiral SFG Spectroscopy Detects DNA First Hydration Shell and Base Pair Structures

ChemRxiv(2024)10.26434/chemrxiv-2024-dwtg0

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1 citations

Daniel Konstantinovsky, Ty Santiago, Pablo E. Videla, Matthew Tremblay, Luis Velarde +4 more

Similarity Metrics for Subcellular Analysis of FRET Microscopy Videos

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c02859

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0 citations

Víctor S. Batista, Caitlin M. Davis, Michael J. Burke

Digital and Tunable Genetically Encoded Tension Sensors Based on Engineered Coiled‐Coils

Angewandte Chemie International Edition(2025)10.1002/anie.202407359

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6 citations

Jinchan Liu, Alexander Foote, Hiroaki Ogasawara, Sarah Al Abdullatif, Víctor S. Batista +2 more

A Triple-Action Inhibitory Mechanism of Allosteric TYK2-Specific Inhibitors

Journal of Investigative Dermatology(2025)10.1016/j.jid.2025.04.025

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6 citations

Ivan B. Lomakin, Víctor S. Batista, Christopher G. Bunick, Jimin Wang

Dynamic and structural insights into allosteric regulation on MKP5 a dual-specificity phosphatase

Nature Communications(2025)10.1038/s41467-025-62150-w

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2 citations

Federica Maschietto, R. Manjula, Shanelle R. Shillingford, James H. Murphy, Elias Lolis +4 more

Atomistic modulation of MIF ‐2 structure, catalysis, and biological signaling via cysteine residues and a small molecule, Ebselen

Protein Science(2025)10.1002/pro.70344

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1 citations

Sirena M. D'Orazio, Pragnya Das, Divya Rajendran, Xander Takada, Yuanjun Shi +8 more

Allosteric Modulation of MIF-2 Structure, Catalysis, and Biological Signaling via Cysteine Residues and a Small Molecule, Ebselen

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654344

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0 citations

Sirena M. D’Orazio, Pragnya Das, Xander Takada, Divya Rajendran, Yuanjun Shi +7 more