🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jane S. Richardson

Duke University

ORCID: 0000-0002-3311-2944
Materials ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
2.6Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Papers

Driven by 27 papers — median percentile 52. Top paper: “PHENIX: a comprehensive Python-based system for macromolecular structure solution”.

PHENIX: a comprehensive Python-based system for macromolecular structure solution

Acta Crystallographica Section D Biological Crystallography(2010)10.1107/s0907444909052925
N/A
1.5DataRank · unranked
24351 citations

Pavel V. Afonine, Gábor Bunkóczi, Vincent B. Chen, Ian W. Davis, Nathaniel Echols +19 more

MolProbity: all-atom structure validation for macromolecular crystallography

Acta Crystallographica Section D Biological Crystallography(2009)10.1107/s0907444909042073
N/A
1.4DataRank · unranked
14539 citations

W. Bryan Arendall, Jeffrey J. Headd, Daniel A. Keedy, Robert M. Immormino, Gary J. Kapral +7 more

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

The importance of residue‐level filtering and the Top2018 best‐parts dataset of high‐quality protein residues

Protein Science(2021)10.1002/pro.4239
Top 25%
0.795DataRank
Top 25%18 citations

David Richardson, Jane S. Richardson, Christopher J. Williams

Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.147033
Top 48%
0.375DataRank
Top 48%7 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Making the invisible enemy visible

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.07.307546
Top 50%
0.350DataRank
Top 50%8 citations

Kay Diederichs, Florens Fischer, Cameron D. Fyfe, Yunyun Gao, Sam Horrell +16 more

The importance of residue-level filtering, and the Top2018 best-parts dataset of high-quality protein residues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.05.463241
Top 65%
0.200DataRank
Top 65%2 citations

Jane S. Richardson, Christopher J. Williams

Sculpting proteins interactively: Continual energy minimization embedded in a graphical modeling system

UNC Libraries(2020)10.17615/a599-1552
N/A
0DataRank · unranked
0 citations

Frederick P. Brooks, David Richardson, Mark C. Surles, Jane S. Richardson

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Nature Methods(2021)10.1038/s41592-020-01051-w
N/A
0DataRank · unranked
119 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Making the invisible enemy visible

Nature Structural & Molecular Biology(2021)10.1038/s41594-021-00593-7
N/A
0DataRank · unranked
29 citations

Kay Diederichs, Florens Fischer, Cameron D. Fyfe, Yunyun Gao, Sam Horrell +16 more

Seeing the PDB

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100742
N/A
0DataRank · unranked
20 citations

David Richardson, David S. Goodsell, Jane S. Richardson

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

UNC Libraries(2020)10.17615/m2an-p252
N/A
0DataRank · unranked
0 citations

David Richardson, Jane S. Richardson, W.B. Arendall, Andrew Leaver-Fay, Jeremy N. Block +6 more

Protein imperfections: separating intrinsic from extrinsic variation of torsion angles

UNC Libraries(2021)10.17615/1khs-0025
N/A
0DataRank · unranked
2 citations

Glenn L. Butterfoss, Jane S. Richardson, Jan Hermans

Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement

UNC Libraries(2020)10.17615/a2jg-d649
N/A
0DataRank · unranked
0 citations

Jane S. Richardson, Ian Davis, Ron Jacak, Andrew Leaver-Fay, Roland A. Pache +12 more

Improved AlphaFold modeling with implicit experimental information

Nature Methods(2022)10.1038/s41592-022-01645-6
N/A
0DataRank · unranked
138 citations

Billy K. Poon, Pavel V. Afonine, Christopher J. Schlicksup, Tristan I. Croll, Claudia Millán +4 more

AlphaFold predictions are valuable hypotheses, and accelerate but do not replace experimental structure determination

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517405
N/A
0DataRank · unranked
49 citations

Dorothée Liebschner, Tristan I. Croll, Christopher J. Williams, Airlie J. McCoy, Billy K. Poon +6 more

Improved AlphaFold modeling with implicit experimental information

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.07.475350
N/A
0DataRank · unranked
28 citations

Billy K. Poon, Pavel V. Afonine, Christopher J. Schlicksup, Tristan I. Croll, Claudia Millán +4 more

Accelerating crystal structure determination with iterative AlphaFold prediction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.18.517112
N/A
0DataRank · unranked
7 citations

Pavel V. Afonine, Dorothée Liebschner, Tristan I. Croll, Airlie J. McCoy, Robert D. Oeffner +6 more

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination

Nature Methods(2023)10.1038/s41592-023-02087-4
N/A
0DataRank · unranked
359 citations

Dorothée Liebschner, Tristan I. Croll, Christopher J. Williams, Airlie J. McCoy, Billy K. Poon +6 more

Accelerating crystal structure determination with iterative AlphaFold prediction

Acta Crystallographica Section D Structural Biology(2023)10.1107/s205979832300102x
N/A
0DataRank · unranked
58 citations

Pavel V. Afonine, Dorothée Liebschner, Tristan I. Croll, Airlie J. McCoy, Robert D. Oeffner +6 more

The bad and the good of trends in model building and refinement for sparse-data regions: pernicious forms of overfitting versus good new tools and predictions

Acta Crystallographica Section D Structural Biology(2023)10.1107/s2059798323008847
N/A
0DataRank · unranked
6 citations

Christopher J. Williams, Vincent B. Chen, Michael G. Prisant, David Richardson, Jane S. Richardson

Community recommendations on cryoEM data archiving and validation

IUCrJ(2024)10.1107/s2052252524001246
N/A
0DataRank · unranked
35 citations

Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal +42 more

RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone

UNC Libraries(2020)10.17615/7e3c-mv82
N/A
0DataRank · unranked
1 citations

Xueyi Wang, David Richardson, Jack Snoeyink, Jane S. Richardson, Laura Murray +1 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1
N/A
0DataRank · unranked
2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Categorizing prediction modes within low-pLDDT regions of AlphaFold 2 structures: near-predictive, pseudostructure and barbed wire

Acta Crystallographica Section D Structural Biology(2025)10.1107/s2059798325007843
N/A
0DataRank · unranked
7 citations

Vincent B. Chen, David C. Richardson, Jane S. Richardson, Christopher J. Williams

Cis ‐ nonProline peptides: Genuine occurrences and their functional roles

Protein Science(2025)10.1002/pro.70157
N/A
0DataRank · unranked
2 citations

Lizbeth L. Videau, Christopher J. Williams, Bradley J. Hintze, S. Mitchell Lewis, David Richardson +1 more

Categorizing prediction modes within low-pLDDT regions of AlphaFold2 structures

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.06.658382
N/A
0DataRank · unranked
2 citations

Vincent B. Chen, David Richardson, Jane S. Richardson, Christopher J. Williams