Catherine J. Wu

Also affiliated with Harvard University, Dana-Farber Cancer Institute

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.6Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns

Nature Communications(2020)10.1038/s41467-020-15171-6

Top 3%

6.2DataRank

Top 3%566 citations

Cameron M. Soulette, Marijke J. van Baren, Kevyn L. Hart, Eva Hrabeta‐Robinson, Catherine J. Wu +2 more

Papers

Driven by 133 papers — median percentile 94. Top paper: “Progressive immune dysfunction with advancing disease stage in renal cell carcinoma”.

Progressive immune dysfunction with advancing disease stage in renal cell carcinoma

Cancer Cell(2021)10.1016/j.ccell.2021.02.013

N/A

9.5DataRank · unranked

526 citations

Kelly Street, Kelly P. Burke, David L. Cookmeyer, Thomas Denize, Christina B. Pedersen +30 more

Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns

Nature Communications(2020)10.1038/s41467-020-15171-6

Top 3%

6.2DataRank

Top 3%566 citations

Cameron M. Soulette, Marijke J. van Baren, Kevyn L. Hart, Eva Hrabeta‐Robinson, Catherine J. Wu +2 more

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Durvalumab plus tremelimumab alone or in combination with low-dose or hypofractionated radiotherapy in metastatic non-small-cell lung cancer refractory to previous PD(L)-1 therapy: an open-label, multicentre, randomised, phase 2 trial

The Lancet Oncology(2022)10.1016/s1470-2045(21)00658-6

N/A

4.8DataRank · unranked

234 citations

Anita Giobbie‐Hurder, Srinika Ranasinghe, Katrina Kao, Ana Lako, Junko Tsuji +32 more

Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma

Nature Medicine(2021)10.1038/s41591-020-01206-4

N/A

4.5DataRank · unranked

525 citations

Donna Leet, Rosa Lundbye Allesøe, Giacomo Oliveira, Shuqiang Li, Adrienne Luoma +36 more

Dictionary of immune responses to cytokines at single-cell resolution

Nature(2023)10.1038/s41586-023-06816-9

Top 6%

3.8DataRank

Top 6%349 citations

Teddy Huang, Shuqiang Li, Aileen Ma, Jorge L. Pérez, Chris Sander +5 more

Expansion, persistence, and efficacy of donor memory-like NK cells infused for posttransplant relapse

Journal of Clinical Investigation(2022)10.1172/jci154334

N/A

3.2DataRank · unranked

139 citations

Grace C. Birch, Guangan Hu, Juliana Vergara Cadavid, Sarah Nikiforow, Joanna Baginska +27 more

A multicenter phase 1 study of nivolumab for relapsed hematologic malignancies after allogeneic transplantation

Blood(2020)10.1182/blood.2019004710

N/A

2.8DataRank · unranked

99 citations

Haesook T. Kim, Caitlin Costello, Alex F. Herrera, Frederick L. Locke, Rodrigo Maegawa +20 more

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/761429

N/A

2.5DataRank · unranked

68 citations

Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Indresh Singh +44 more

Immune determinants of CAR-T cell expansion in solid tumor patients receiving GD2 CAR-T cell therapy

Cancer Cell(2023)10.1016/j.ccell.2023.11.011

N/A

2.4DataRank · unranked

110 citations

Tara Murty, Ahmad Alimadadi, Cristina F. Contreras, Caroline Duault, Priyanka B. Subrahmanyam +39 more

Discovery of Candidate DNA Methylation Cancer Driver Genes

Cancer Discovery(2021)10.1158/2159-8290.cd-20-1334

N/A

2.1DataRank · unranked

72 citations

Loïc Renaud, Ronan Chaligné, Johannes Bloehdorn, Eugen Tausch, Daniel Mertens +14 more

Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome

Nature Medicine(2023)10.1038/s41591-022-02113-6

N/A

1.7DataRank · unranked

83 citations

Ignaty Leshchiner, Romain Guièze, Connor Johnson, Eugen Tausch, Sameer A. Parikh +49 more

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.945840

N/A

1.7DataRank · unranked

45 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +22 more

Latent human herpesvirus 6 is reactivated in CAR T cells

Nature(2023)10.1038/s41586-023-06704-2

N/A

1.6DataRank · unranked

53 citations

Yajie Yin, Katie Maurer, Katalin Sandor, Bence Dániel, Garima Yagnik +35 more

Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy

Cell Reports(2021)10.1016/j.celrep.2021.109992

N/A

1.6DataRank · unranked

59 citations

Elham Azizi, Cassandra Burdziak, Vinhkhang N. Nguyen, Christina Ennis, Katie Maurer +17 more

Longitudinal Single-Cell Dynamics of Chromatin Accessibility and Mitochondrial Mutations in Chronic Lymphocytic Leukemia Mirror Disease History

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0276

N/A

1.5DataRank · unranked

64 citations

Satyen H. Gohil, Caleb A. Lareau, Leif S. Ludwig, Erin M. Parry, Teddy Huang +15 more

ALK peptide vaccination restores the immunogenicity of ALK-rearranged non-small cell lung cancer

Nature Cancer(2023)10.1038/s43018-023-00591-2

N/A

1.4DataRank · unranked

42 citations

Enrico Patrucco, Cristina Mastini, Navin R. Mahadevan, Tran C. Thai, Elisa Bergaggio +26 more

The immune microenvironment shapes transcriptional and genetic heterogeneity in chronic lymphocytic leukemia

Blood Advances(2022)10.1182/bloodadvances.2021006941

N/A

1.2DataRank · unranked

50 citations

Yun-Ching Chen, Aina Zurita Martinez, Maria João Baptista, Stefania Pittaluga, Delong Liu +10 more

High throughput single-cell detection of multiplex CRISPR-edited gene modifications

Genome biology(2020)10.1186/s13059-020-02174-1

N/A

1.2DataRank · unranked

34 citations

Kendell Clement, Shuqiang Li, María Hernández‐Sánchez, Robert Redd, Shu Wang +11 more

Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

Nature(2018)10.1038/s41586-018-0792-9

N/A

1.1DataRank · unranked

1412 citations

Jing Sun, Itay Tirosh, Nathan D. Mathewson, Shuqiang Li, Giacomo Oliveira +51 more

Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma

Journal of Clinical Investigation(2022)10.1172/jci151666

N/A

1.0DataRank · unranked

32 citations

Susan Klaeger, Phuong M. Le, Keegan Korthauer, Jingwei Cheng, Varsha Ananthapadmanabhan +41 more

Phenotype, specificity and avidity of antitumour CD8+ T cells in melanoma

Nature(2021)10.1038/s41586-021-03704-y

N/A

0.951DataRank · unranked

566 citations

Kari Stromhaug, Susan Klaeger, Tomasz Kula, Dennie T. Frederick, Phuong M. Le +21 more

Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

Blood Cancer Discovery(2020)10.1158/2643-3230.bcd-19-0058

N/A

0.946DataRank · unranked

30 citations

Anat Biran, Noelia Purroy, Camilla K. Lemvigh, Kendell Clement, Michaela Gruber +22 more

Automated Flow Synthesis of Tumor Neoantigen Peptides for Personalized Immunotherapy

Scientific Reports(2020)10.1038/s41598-019-56943-5

N/A

0.912DataRank · unranked

32 citations

Rebecca L. Holden, Binyou Wang, Pu‐Guang Chen, Stephanie Hanna, Zhuting Hu +9 more

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2020)10.1038/s41587-020-0645-6

N/A

0.860DataRank · unranked

307 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Nature Biotechnology(2021)10.1038/s41587-021-01021-3

N/A

0.853DataRank · unranked

294 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +24 more

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/120295

N/A

0.852DataRank · unranked

292 citations

Nicolas Stransky, Bo Li, Xiao Yang, Asma Bankapur, Carrie Ganote +10 more

Baseline immune state and T-cell clonal kinetics are associated with durable response to CAR-T therapy in large B-cell lymphoma

Blood(2024)10.1182/blood.2024024381

N/A

0.840DataRank · unranked

19 citations

Isabella N. Grabski, Roch Houot, Satyen H. Gohil, Shogo Miura, Robert Redd +19 more

Nanowire-Mediated Delivery Enables Functional Interrogation of Primary Immune Cells: Application to the Analysis of Chronic Lymphocytic Leukemia

Nano Letters(2012)10.1021/nl3042917

N/A

0.776DataRank · unranked

175 citations

Jellert T. Gaublomme, Lili Wang, Nir Yosef, Nicolas Chevrier, Mette S. Andersen +12 more

Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma

Nature Communications(2021)10.1038/s41467-021-21068-9

N/A

0.770DataRank · unranked

169 citations

David A. Braun, Sachet A. Shukla, Wenting Pan, Xīn Gào, Yue Hou +48 more

Molecular map of chronic lymphocytic leukemia and its impact on outcome

Nature Genetics(2022)10.1038/s41588-022-01140-w

N/A

0.753DataRank · unranked

150 citations

Ziao Lin, Cynthia K. Hahn, Ferran Nadeu, Martí Duran‐Ferrer, Kristen E. Stevenson +34 more

Activation of Notch and Myc Signaling via B-cell–Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia

Cancer Research(2021)10.1158/0008-5472.can-21-1273

N/A

0.749DataRank · unranked

22 citations

Shanye Yin, Helene Kretzmer, Elisa Ten Hacken, Salma Parvin, Fabienne Lucas +26 more

Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response

Immunity(2022)10.1016/j.immuni.2022.09.002

N/A

0.747DataRank · unranked

144 citations

J. Bryan Iorgulescu, Shuqiang Li, Mehdi Borji, Irving Barrera, Vignesh Shanmugam +11 more

Integrative clinical and molecular characterization of translocation renal cell carcinoma

Cell Reports(2022)10.1016/j.celrep.2021.110190

N/A

0.717DataRank · unranked

118 citations

Ananthan Sadagopan, Praful Ravi, Nebiyou Y. Metaferia, Jiao Li, Shatha AbuHammad +35 more

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect

Science Translational Medicine(2020)10.1126/scitranslmed.abb7661

N/A

0.705DataRank · unranked

24 citations

Christina Ennis, Vinhkhang N. Nguyen, Satyen H. Gohil, Kendell Clement, Sachet A. Shukla +22 more

Epitope spreading toward wild-type melanocyte-lineage antigens rescues suboptimal immune checkpoint blockade responses

Science Translational Medicine(2021)10.1126/scitranslmed.abd8636

N/A

0.691DataRank · unranked

99 citations

Masayoshi Kawakubo, Vikram R. Juneja, Mack Y. Su, Tal Hadad Erlich, Martin W. LaFleur +32 more

ZNF683 marks a CD8+ T cell population associated with anti-tumor immunity following anti-PD-1 therapy for Richter syndrome

Cancer Cell(2023)10.1016/j.ccell.2023.08.013

N/A

0.646DataRank · unranked

73 citations

Camilla K. Lemvigh, Stephanie L. Deng, Nathan Dangle, Neil Ruthen, Binyamin A. Knisbacher +30 more

Germline copy number variation associated with Mendelian inheritance of CLL in two families

Leukemia(2012)10.1038/leu.2012.33

N/A

0.627DataRank · unranked

11 citations

A Vartanov, M Ash, Christine A. Roden, Laura MacConaill, U Hainz +21 more

Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-3251

Top 32%

0.613DataRank

Top 32%15 citations

Jingxin Fu, Carrie Cibulskis, Aashna Jhaveri, Curtis Gumbs, Biswajit Das +41 more

Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100133

N/A

0.609DataRank · unranked

57 citations

Annie Apffel, Karl R. Clauser, Siranush Sarkizova, Giacomo Oliveira, Suzanna Rachimi +12 more

Evaluation of predictive biomarkers for nivolumab in patients (pts) with metastatic clear cell renal cell carcinoma (mccRCC) from the CheckMate-025 (CM-025) trial.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.5023

N/A

0.599DataRank · unranked

12 citations

Opeyemi A. Jegede, Miriam Sant’Angelo, Sonia Moreno, David A. Braun, Megan Wind‐Rotolo +15 more

Endocrine Therapy Synergizes with SMAC Mimetics to Potentiate Antigen Presentation and Tumor Regression in Hormone Receptor–Positive Breast Cancer

Cancer Research(2023)10.1158/0008-5472.can-23-1711

N/A

0.596DataRank · unranked

15 citations

Yingtian Xie, Shira Sherman, Zsuzsanna Nagy, Douglas Russo, Tara Akhshi +36 more

Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease

Blood(2023)10.1182/blood.2022018246

N/A

0.593DataRank · unranked

51 citations

Yang Liu, Jacquelyn O. Wolff, Lin Yang, Len Taing, Aashna Jhaveri +32 more

Integrative genotyping of cancer and immune phenotypes by long-read sequencing

Nature Communications(2024)10.1038/s41467-023-44137-7

N/A

0.546DataRank · unranked

37 citations

Mehdi Borji, Adi Nagler, Haoxiang Lyu, Wesley S. Lu, Nicoletta Cieri +12 more

A multidimensional analysis reveals distinct immune phenotypes and the composition of immune aggregates in pediatric acute myeloid leukemia

Leukemia(2024)10.1038/s41375-024-02381-w

N/A

0.543DataRank · unranked

16 citations

Inge van der Werf, Livius Penter, Marijn A. Vermeulen, Farnaz Barneh, Alicia Perzolli +18 more

Genomic mediators of acquired resistance to immunotherapy in metastatic melanoma

Cancer Cell(2025)10.1016/j.ccell.2025.01.009

N/A

0.524DataRank · unranked

32 citations

Mouadh Benamar, Jihye Park, Haley E. Sax, Giacomo Oliveira, Alice Bosma-Moody +10 more

Distinct cellular dynamics associated with response to CAR-T therapy for refractory B-cell lymphoma

medRxiv(2022)10.1101/2022.04.04.22273422

N/A

0.457DataRank · unranked

20 citations

Mark B. Leick, Katie Maurer, Satyen H. Gohil, Rebecca C. Larson, Ning Yao +22 more

Slide-tags: scalable, single-nucleus barcoding for multi-modal spatial genomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.01.535228

N/A

0.442DataRank · unranked

18 citations

Jackson A. Weir, Naeem Nadaf, Matthew Shabet, Vipin Kumar, Sandeep Kambhampati +12 more

Smoking habit and long-term colorectal cancer incidence by exome-wide mutational and neoantigen loads: evidence based on the prospective cohort incident-tumour biobank method

BMJ Oncology(2025)10.1136/bmjonc-2025-000787

Top 47%

0.386DataRank

Top 47%10 citations

Tomotaka Ugai, Carino Gurjao, Satoko Ugai, Xuehong Zhang, Koichiro Haruki +26 more

A multidimensional analysis reveals distinct immune phenotypes and the composition of immune aggregates in pediatric acute myeloid leukemia

medRxiv(2023)10.1101/2023.03.03.23286485

N/A

0.370DataRank · unranked

7 citations

Inge van der Werf, Livius Penter, Marijn A. Vermeulen, Farnaz Barneh, Alicia Perzolli +18 more

Tracking Rare Single Donor and Recipient Immune and Leukemia Cells after Allogeneic Hematopoietic Cell Transplantation Using Mitochondrial DNA Mutations

Blood Cancer Discovery(2024)10.1158/2643-3230.bcd-23-0138

N/A

0.345DataRank · unranked

9 citations

Nicoletta Cieri, Katie Maurer, Marwan Kwok, Haoxiang Lyu, Wesley S. Lu +16 more

A randomized, placebo-controlled trial of the BTK inhibitor zanubrutinib in hospitalized patients with COVID-19 respiratory distress: immune biomarker and clinical findings

Frontiers in Immunology(2025)10.3389/fimmu.2024.1369619

N/A

0.343DataRank · unranked

7 citations

Camille N. Kotton, Jae‐Hyun Park, Giorgia Moranzoni, Camilla K. Lemvigh, Joseph Gathe +30 more

Integrated Immunopeptidomic and Proteomic Analysis of COVID-19 lung biopsies

Frontiers in Immunology(2023)10.3389/fimmu.2023.1269335

N/A

0.312DataRank · unranked

7 citations

Susan Klaeger, Vipheaviny Chea, Isabel Carulli, Suzanna Rachimi, Katharine E. Black +11 more

Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012707

N/A

0.268DataRank · unranked

4 citations

Jennifer Borowsky, Juha P. Väyrynen, Koichiro Haruki, Melissa Zhao, Andressa Dias Costa +16 more

Robust integration of single-cell cytometry datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.28.450128

N/A

0.267DataRank · unranked

2 citations

Søren Helweg Dam, Mike Bogetofte Barnkob, Michael D. Leipold, Noelia Purroy, Laura Z. Rassenti +7 more

RPS15 and TP53 Co-Mutation Drives B Cell Malignancy through Altered Translation and MYC Activation in a Murine Model

Blood(2020)10.1182/blood-2020-138900

N/A

0.241DataRank · unranked

4 citations

Tamara Ouspenskaia, Doris Fu, Peyton Waddicor, Anat Biran, Aviv Liani +29 more

Design of Cytotoxic T Cell Epitopes by Machine Learning of Human Degrons

ACS Central Science(2024)10.1021/acscentsci.3c01544

N/A

0.208DataRank · unranked

3 citations

Somesh Mohapatra, Mariane B. Melo, Jacob Rodriguez, Na Li, Wuhbet Abraham +8 more

Tumor-Immune Partitioning and Clustering (TIPC) algorithm reveals distinct signatures of tumor-immune cell interactions within the tumor microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.29.111542

N/A

0.208DataRank · unranked

3 citations

Jennifer Borowsky, Juha P. Väyrynen, Koichiro Haruki, Melissa Zhao, Andressa Dias Costa +13 more

Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2023)10.1038/s41587-023-01942-1

N/A

0.179DataRank · unranked

2 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Immunogenomic characterization of advanced clear cell renal cell carcinoma treated with PD-1 blockade.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.5010

N/A

0.165DataRank · unranked

2 citations

Yue Hou, Ziad Bakouny, Miriam Ficial, Miriam Sant’Angelo, Petra Ross‐Macdonald +15 more

Whole Genome Sequencing Identifies Functional Mutations In the Wnt Pathway In CLL

Blood(2010)10.1182/blood.v116.21.693.693

N/A

0.153DataRank · unranked

1 citations

Nathalie Pochet, Kristian Cibulskis, Wandi Zhang, Mike Lawrence, Quinlan L. Sievers +12 more

1.11 Integrative Genomic Analysis Implicates PIK3CA and MYC in Chronic Lymphocytic Leukemia

Clinical Lymphoma Myeloma and Leukemia(2011)10.1016/j.clml.2011.09.012

N/A

0.133DataRank · unranked

1 citations

Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara +13 more

T reg cells drive MYCN-mediated immunosuppression and tumor aggressiveness in high-risk neuroblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.03.510561

N/A

0.104DataRank · unranked

1 citations

Andrew Lam, Xu Zhang, Satyaki Sengupta, J. Bryan Iorgulescu, Tao Zuo +16 more

Optimized liquid and gas phase fractionation increase HLA-peptidome coverage for primary cell and tissue samples

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.25.445487

N/A

0.104DataRank · unranked

1 citations

Annie Apffel, Karl R. Clauser, Siranush Sarkizova, Giacomo Oliveira, Suzanna Rachimi +12 more

Superoxide-mediated phosphorylation and stabilization of Mcl-1 by AKT underlie venetoclax resistance in hematologic malignancies

Leukemia(2025)10.1038/s41375-025-02694-4

N/A

0DataRank · unranked

8 citations

Jolin Xiao Hui Lai, Kartini Iskandar, Benedict J. Leong, Chuqi Wang, Yuhan Wang +10 more

Poor Engraftment After Posttransplant Cyclophosphamide Graft‐Versus‐Host Disease Prophylaxis in Patients With Myelofibrosis

American Journal of Hematology(2025)10.1002/ajh.27741

N/A

0DataRank · unranked

3 citations

Deborah Liney, Kristen Rizza, Corey Cutler, John Koreth, Sarah Nikiforow +10 more

Reduced incidence of relapse and graft-versus-host disease in acute myeloid leukemia after allogeneic hematopoietic cell transplantation

Haematologica(2025)10.3324/haematol.2025.287390

N/A

0DataRank · unranked

1 citations

Robert J. Soiffer, Corey Cutler, John Koreth, Sarah Nikiforow, Roman M. Shapiro +8 more

Selection of targeted neoantigens for ongoing personalized cancer vaccine trials at Dana Farber Cancer Institute 2189

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.138

N/A

0DataRank · unranked

0 citations

David A. Braun, Cleo Forman, Chloe Ran Tu, Siranush Sarkizova, Nir Hacohen +4 more

Presence of tertiary lymphoid structures and exhausted tissue-resident T cells determines clinical response to PD-1 blockade in renal cell carcinoma 3574

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1362

N/A

0DataRank · unranked

0 citations

Miya B. Hugaboom, Kelly Street, Neil Ruthen, Opeyemi A. Jegede, Nicholas R. Schindler +22 more

A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data

Genome Research(2024)10.1101/gr.279126.124

N/A

0DataRank · unranked

10 citations

Shouvik Mani, Nicolas Beltran-Velez, Katie Maurer, Teddy Huang, Shuqiang Li +6 more

ATIM-32. PERSONALIZED NEOANTIGEN-TARGETING VACCINE GENERATES ROBUST SYSTEMIC AND INTRATUMORAL T CELL RESPONSES IN GLIOBLASTOMA (GBM) PATIENTS

Neuro-Oncology(2018)10.1093/neuonc/noy148.027

N/A

0DataRank · unranked

0 citations

Itay Tirosh, Annabelle Anandappa, Jing Sun, Chang‐Jiun Wu, Evisa Gjini +21 more

Supplementary Methods, Figures 1-4 and Tables 1 - 5, 7 - 15 from Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

INDIGO (University of Illinois at Chicago)(2023)10.1158/1078-0432.22444137.v1

N/A

0DataRank · unranked

0 citations

Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara +13 more

Data from Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

(2023)10.1158/1078-0432.c.6520068.v1

N/A

0DataRank · unranked

0 citations

Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara +13 more

Data from Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

(2023)10.1158/1078-0432.c.6520068

N/A

0DataRank · unranked

0 citations

Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara +13 more

Supplementary Table 6 from Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

(2023)10.1158/1078-0432.22444134

N/A

0DataRank · unranked

0 citations

Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara +13 more

Supplementary Table 6 from Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

INDIGO (University of Illinois at Chicago)(2023)10.1158/1078-0432.22444134.v1

N/A

0DataRank · unranked

0 citations

Megan Hanna, Bethany Tesar, Lillian Werner, Nathalie Pochet, John M. Asara +13 more

Measuring the predictability of life outcomes with a scientific mass collaboration

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1915006117

N/A

0DataRank · unranked

325 citations

Ian Lundberg, Alexander T. Kindel, Caitlin Ahearn, Khaled AlGhoneim, Abdullah Almaatouq +95 more

Directing Traffic: How to Effectively Drive T Cells into Tumors

Cancer Discovery(2020)10.1158/2159-8290.cd-19-0790

N/A

0DataRank · unranked

115 citations

Catherine J. Wu, Patrick A. Ott, Annabelle Anandappa

Integrated Genomic Characterization of the Human Immunome in Cancer

Cancer Research(2020)10.1158/0008-5472.can-20-0384

N/A

0DataRank · unranked

32 citations

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Robust Anti‐Tumor T Cell Response with Efficient Intratumoral Infiltration by Nanodisc Cancer Immunotherapy

Advanced Therapeutics(2020)10.1002/adtp.202000094

N/A

0DataRank · unranked

25 citations

Priti B. Singh, Xiaoqi Sun, Cheng Xu, Alireza Hassani Najafabadi, Lindsay Scheetz +9 more

Personal tumor antigens in blood malignancies: genomics-directed identification and targeting

Journal of Clinical Investigation(2020)10.1172/jci129209

N/A

0DataRank · unranked

17 citations

Catherine J. Wu, Livius Penter

Personal Neoantigen Cancer Vaccines: A Road Not Fully Paved

Cancer Immunology Research(2020)10.1158/2326-6066.cir-20-0526

N/A

0DataRank · unranked

31 citations

Ute Burkhardt, Nir Hacohen, Catherine J. Wu, Edward F. Fritsch

Targeting constitutively active STAT3 in chronic lymphocytic leukemia: A clinical trial of the STAT3 inhibitor pyrimethamine with pharmacodynamic analyses

American Journal of Hematology(2020)10.1002/ajh.26084

N/A

0DataRank · unranked

29 citations

Sarah R. Walker, Lisa N. Heppler, Svitlana Tyekucheva, Erik A. Nelson, Josephine L. Klitgaard +15 more

Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.194332

N/A

0DataRank · unranked

8 citations

Elham Azizi, Cassandra Burdziak, Vinhkhang N. Nguyen, Christina Ennis, Zi-Ning Choo +9 more

Integrative Molecular Characterization of Sarcomatoid and Rhabdoid Renal Cell Carcinoma Reveals Determinants of Poor Prognosis and Response to Immune Checkpoint Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.121806

N/A

0DataRank · unranked

3 citations

David A. Braun, Sachet A. Shukla, Wenting Pan, Xīn Gào, Yue Hou +47 more

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.09.033555

N/A

0DataRank · unranked

0 citations

Christina Ennis, Vinhkhang N. Nguyen, Kendell Clement, Satyen H. Gohil, Sachet A. Shukla +20 more

Comprehensive and Integrated Genomic Characterization of Human Immunome in Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.02.128884

N/A

0DataRank · unranked

0 citations

Todd Triplett, Brandon Burgman, Ming Sun, Daniel J. McGrail, Dan Qi +10 more

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Cancer Cell(2021)10.1016/j.ccell.2021.02.003

N/A

0DataRank · unranked

60 citations

Shanye Yin, Elisa Ten Hacken, Tomasz Sewastianik, Mohamed Uduman, Alba Font‐Tello +24 more

Molecular and cellular features of CTLA-4 blockade for relapsed myeloid malignancies after transplantation

Blood(2021)10.1182/blood.2021010867

N/A

0DataRank · unranked

42 citations

Yi Zhang, Alexandra Savell, Teddy Huang, Nicoletta Cieri, Emily M. Thrash +33 more

60 Years Young: The Evolving Role of Allogeneic Hematopoietic Stem Cell Transplantation in Cancer Immunotherapy

Cancer Research(2021)10.1158/0008-5472.can-21-0301

N/A

0DataRank · unranked

39 citations

Katie Maurer, Catherine J. Wu, Nicoletta Cieri

Understanding CLL biology through mouse models of human genetics

Blood(2021)10.1182/blood.2021011993

N/A

0DataRank · unranked

17 citations

Catherine J. Wu, Elisa Ten Hacken

Cancer and COVID-19: On the Quest for Effective Vaccines

Blood Cancer Discovery(2021)10.1158/2643-3230.bcd-20-0205

N/A

0DataRank · unranked

8 citations

Edward F. Fritsch, Catherine J. Wu, Marwan Kwok

Tumor-Immune Partitioning and Clustering (TIPC): an algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment

Research Square(2021)10.21203/rs.3.rs-847464/v1

N/A

0DataRank · unranked

0 citations

Mai Chan Lau, Jennifer Borowsky, Juha P. Väyrynen, Koichiro Haruki, Melissa Zhao +14 more

cyCombine allows for robust integration of single-cell cytometry datasets within and across technologies

Nature Communications(2022)10.1038/s41467-022-29383-5

N/A

0DataRank · unranked

127 citations

Søren Helweg Dam, Mike Bogetofte Barnkob, Michael D. Leipold, Noelia Purroy, Laura Z. Rassenti +7 more

Report of the First International Symposium on NUT Carcinoma

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-0591

N/A

0DataRank · unranked

55 citations

Michael L. Cheng, Glenn J. Hanna, Steven G. DuBois, Nicole G. Chau, Christine L. Hann +18 more

Improved T-cell Immunity Following Neoadjuvant Chemotherapy in Ovarian Cancer

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-21-2834

N/A

0DataRank · unranked

35 citations

Nabihah Tayob, Livius Penter, MacLean Sellars, Anna Tarren, Vipheaviny Chea +19 more

Single-cell analysis reveals immune dysfunction from the earliest stages of CLL that can be reversed by ibrutinib

Blood(2022)10.1182/blood.2021013926

N/A

0DataRank · unranked

18 citations

Yuzhou Evelyn Tong, Camilla K. Lemvigh, Nicoletta Cieri, Shuqiang Li, Erin M. Parry +17 more

The end of the beginning: application of single-cell sequencing to chronic lymphocytic leukemia

Blood(2022)10.1182/blood.2021014669

N/A

0DataRank · unranked

8 citations

Catherine J. Wu, Adi Nagler

Loss-of-function lesions impact B-cell development and fitness but are insufficient to drive CLL in mouse models

Blood Advances(2022)10.1182/bloodadvances.2022009135

N/A

0DataRank · unranked

5 citations

Shanye Yin, Robert Redd, María Hernández‐Sánchez, Kendell Clement, Gabriela Brunsting Hoffmann +8 more

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Current Opinion in Immunology(2022)10.1016/j.coi.2022.102176

N/A

0DataRank · unranked

3 citations

Catherine J. Wu, Camila Robles-Oteíza

503 Cytotoxic revival is implicated in response to neoadjuvant PD-1 blockade for head and neck squamous cell carcinoma

Regular and Young Investigator Award Abstracts(2022)10.1136/jitc-2022-sitc2022.0503

N/A

0DataRank · unranked

2 citations

Giacomo Oliveira, Ann Marie Egloff, Zexiang Zeng, Rebecca D. Chernock, Liye Zhou +33 more

Molecular predictors of response among patients with MMRd tumors treated on NCI-MATCH Arm Z1D.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.2616

N/A

0DataRank · unranked

0 citations

Nilofer S. Azad, Jennifer Lee, Jacob P. K. Gross, Michael J. Overman, Katrina Kao +14 more

Dynamics and specificities of T cells in cancer immunotherapy

Nature reviews. Cancer(2023)10.1038/s41568-023-00560-y

N/A

0DataRank · unranked

509 citations

Catherine J. Wu, Giacomo Oliveira

Preexisting tumor-resident T cells with cytotoxic potential associate with response to neoadjuvant anti–PD-1 in head and neck cancer

Science Immunology(2023)10.1126/sciimmunol.adf4968

N/A

0DataRank · unranked

118 citations

Ann Marie Egloff, Alexander B. Afeyan, Jacquelyn O. Wolff, Zexiang Zeng, Rebecca D. Chernock +34 more

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Nature Communications(2023)10.1038/s41467-023-36126-7

N/A

0DataRank · unranked

72 citations

Kwasi Adu‐Berchie, Siddharth Iyer, Yutong Liu, Nicoletta Cieri, Joshua M. Brockman +4 more

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Clinical Cancer Research(2023)10.1158/1078-0432.ccr-22-3714

N/A

0DataRank · unranked

52 citations

J. Bryan Iorgulescu, Alexander Ling, Genaro R. Villa, Josephina A.M.A. Gadet, Laxmi Parida +6 more

Hyperphosphorylation of BCL-2 family proteins underlies functional resistance to venetoclax in lymphoid malignancies

Journal of Clinical Investigation(2023)10.1172/jci170169

N/A

0DataRank · unranked

43 citations

Fen Zhu, Olga Dashevsky, Rin Mizuno, Jolin Xiao Hui Lai, Liam Hackett +19 more

The BRD4–NUT Fusion Alone Drives Malignant Transformation of NUT Carcinoma

Cancer Research(2023)10.1158/0008-5472.can-23-2545

N/A

0DataRank · unranked

39 citations

Julianna Huang, Luke Wojenski, Yeying Huang, Prafulla C. Gokhale, Brittaney A. Leeper +14 more

SF3B1 mutation and ATM deletion codrive leukemogenesis via centromeric R-loop dysregulation

Journal of Clinical Investigation(2023)10.1172/jci163325

N/A

0DataRank · unranked

31 citations

Haifeng Shen, Bo Zhang, Aijun Liao, Lu Yang, Meiling Jin +14 more

YAP1 and WWTR1 expression inversely correlates with neuroendocrine markers in Merkel cell carcinoma

Journal of Clinical Investigation(2023)10.1172/jci157171

N/A

0DataRank · unranked

29 citations

Ashley K. Gartin, Mofei Liu, Jingwei Cheng, Harita Dharaneeswaran, Derin B. Keskin +5 more

Posttransplant cyclophosphamide vs tacrolimus–based GVHD prophylaxis: lower incidence of relapse and chronic GVHD

Blood Advances(2023)10.1182/bloodadvances.2023009791

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0DataRank · unranked

24 citations

Vincent T. Ho, Eno Inyang, Corey Cutler, John Koreth, Roman M. Shapiro +9 more

Lower incidence of chronic GVHD observed after transplantation with cryopreserved unrelated allogeneic stem cells

Blood Advances(2023)10.1182/bloodadvances.2022009231

N/A

0DataRank · unranked

12 citations

Haesook T. Kim, Heather Garrity, Deborah Liney, Corey Cutler, Joseph H. Antin +10 more

IGLV3-21R110 mutation has prognostic value in patients with treatment-naive chronic lymphocytic leukemia

Blood Advances(2023)10.1182/bloodadvances.2023010132

N/A

0DataRank · unranked

9 citations

Berta Pons-Brun, Núria Russiñol, Heribert Playà-Albinyana, Tycho Baumann, Martí Duran‐Ferrer +25 more

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STAR Protocols(2023)10.1016/j.xpro.2023.102165

N/A

0DataRank · unranked

2 citations

Michaela Gruber, María Hernández‐Sánchez, Gabriela Brunsting Hoffmann, Kaitlyn Baranowski, Robert Redd +4 more

DIISCO: A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.566956

N/A

0DataRank · unranked

1 citations

Shouvik Mani, Nicolas Beltran-Velez, Katie Maurer, Satyen H. Gohil, Shuqiang Li +5 more

Data from Activation of Notch and Myc Signaling via B-cell–Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia

(2023)10.1158/0008-5472.c.6513540.v1

N/A

0DataRank · unranked

0 citations

Shanye Yin, Helene Kretzmer, Elisa Ten Hacken, Salma Parvin, Fabienne Lucas +26 more

Data from Integrated Genomic Characterization of the Human Immunome in Cancer

(2023)10.1158/0008-5472.c.6512134.v1

N/A

0DataRank · unranked

0 citations

Brandon Burgman, Daniel J. McGrail, Ming Sun, Dan Qi, Sachet A. Shukla +10 more

Data from Longitudinal Single-Cell Dynamics of Chromatin Accessibility and Mitochondrial Mutations in Chronic Lymphocytic Leukemia Mirror Disease History

(2023)10.1158/2159-8290.c.6549383.v1

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0DataRank · unranked

0 citations

Satyen H. Gohil, Caleb A. Lareau, Leif S. Ludwig, Erin M. Parry, Teddy Huang +15 more

Fine tuning of CpG spatial distribution with DNA origami for improved cancer vaccination

Nature Nanotechnology(2024)10.1038/s41565-024-01615-3

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0DataRank · unranked

162 citations

Olivia J. Young, Christopher M. Wintersinger, Frances M. Anastassacos, James I. MacDonald, Giorgia Isinelli +18 more

Non-pathogenic E. coli displaying decoy-resistant IL18 mutein boosts anti-tumor and CAR NK cell responses

Nature Biotechnology(2024)10.1038/s41587-024-02418-6

N/A

0DataRank · unranked

55 citations

Michal Sheffer, Isabel E. Kaplan, Zongqi Wang, Mubin Tarannum, Khanhlinh Dinh +24 more

Oncogene-induced TIM-3 ligand expression dictates susceptibility to anti–TIM-3 therapy in mice

Journal of Clinical Investigation(2024)10.1172/jci177460

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0DataRank · unranked

19 citations

Lukas M. Braun, Karen O. Dixon, Melissa Zwick, Helena Engel, Alina Hartmann +37 more

Human Airway and Alveolar Organoids from BAL Fluid

American Journal of Respiratory and Critical Care Medicine(2024)10.1164/rccm.202310-1831le

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0DataRank · unranked

18 citations

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The molecular map of CLL and Richter's syndrome

Seminars in Hematology(2024)10.1053/j.seminhematol.2024.01.009

N/A

0DataRank · unranked

9 citations

Erin M. Parry, Catherine J. Wu, Amit Sud

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Transplantation and Cellular Therapy(2024)10.1016/j.jtct.2024.05.001

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0DataRank · unranked

8 citations

Vincent T. Ho, Sarah Nikiforow, Corey Cutler, John Koreth, Roman M. Shapiro +7 more

Rapid parallel reconstruction and specificity screening of hundreds of T cell receptors

Nature Protocols(2024)10.1038/s41596-024-01061-4

N/A

0DataRank · unranked

7 citations

Catherine J. Wu, Giacomo Oliveira, Alexander B. Afeyan

T cell activation contributes to purifying selection against the MELAS‐associated m.3243A>G pathogenic variant in blood

Journal of Inherited Metabolic Disease(2024)10.1002/jimd.12726

N/A

0DataRank · unranked

6 citations

Shuqiang Li, Kenneth J. Livak, Amel Karaa, Catherine J. Wu, Vamsi K. Mootha +1 more

Diagnosing recipient- vs. donor-derived posttransplant myelodysplastic neoplasm via targeted single-cell mutational profiling

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N/A

0DataRank · unranked

3 citations

Livius Penter, Lam Vuong, Philip Bischoff, Benedikt Obermayer, Alexandra Trinks +12 more

Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.09.579677

N/A

0DataRank · unranked

6 citations

Cameron Y. Park, Shouvik Mani, Mehdi Borji, Livius Penter, Yinuo Jin +20 more

Nonpathogenic E. coli engineered to surface display cytokines as a new platform for immunotherapy

Research Square(2024)10.21203/rs.3.rs-4031911/v1

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0DataRank · unranked

3 citations

Shaobo Yang, Michal Sheffer, Isabel Kaplan, Zongqi Wang, Mubin Tarannum +22 more

HIF regulates multiple translated endogenous retroviruses: Implications for cancer immunotherapy

Cell(2025)10.1016/j.cell.2025.01.046

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0DataRank · unranked

56 citations

David A. Braun, Karl R. Clauser, Vijyendra Ramesh, Nitin H. Shirole, Joseph E. Duke-Cohan +41 more

Presence of Tertiary Lymphoid Structures and Exhausted Tissue-Resident T Cells Determines Clinical Response to PD-1 Blockade in Renal Cell Carcinoma

Cancer Discovery(2025)10.1158/2159-8290.cd-24-0991

N/A

0DataRank · unranked

38 citations

Lena V. Wirth, Kelly Street, Neil Ruthen, Opeyemi A. Jegede, Nicholas R. Schindler +22 more

A multi-adjuvant personal neoantigen vaccine generates potent immunity in melanoma

Cell(2025)10.1016/j.cell.2025.06.019

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0DataRank · unranked

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N/A

0DataRank · unranked

9 citations

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