Nicholas T. Ingolia

Also affiliated with University of California, Berkeley

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.2Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Standardized annotation of translated open reading frames

Nature Biotechnology(2022)10.1038/s41587-022-01369-0

Top 7%

3.2DataRank

Top 7%252 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis +31 more

Papers

Driven by 41 papers — median percentile 93. Top paper: “Standardized annotation of translated open reading frames”.

Standardized annotation of translated open reading frames

Nature Biotechnology(2022)10.1038/s41587-022-01369-0

Top 7%

3.2DataRank

Top 7%252 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis +31 more

Robust T cell activation requires an eIF3-driven burst in T cell receptor translation

eLife(2021)10.7554/elife.74272

N/A

0.950DataRank · unranked

39 citations

Lucas Ferguson, Grant H. Chin, Benjamin E. Smith, Ryan Apathy, Theodore L. Roth +6 more

A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447896

N/A

0.759DataRank · unranked

22 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Jose Manuel Gonzalez, Michele Magrane +23 more

A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants

eLife(2023)10.7554/elife.81302

N/A

0.636DataRank · unranked

20 citations

Naoyoshi Kumakura, Hironori Saito, Ryan Muller, Madoka Nishimoto, Mari Mito +7 more

Deciphering disordered regions controlling mRNA decay in high-throughput

Nature(2025)10.1038/s41586-025-08919-x

N/A

0.430DataRank · unranked

10 citations

Nicholas T. Ingolia, Joseph H. Lobel

Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms

Life Science Alliance(2024)10.26508/lsa.202302501

N/A

0.414DataRank · unranked

9 citations

Lucas Ferguson, Nicholas T. Ingolia, Samantha G. Fernandez

eIF3 engages with 3’-UTR termini of highly translated mRNAs

eLife(2024)10.7554/elife.102977

N/A

0.397DataRank · unranked

9 citations

Lucas Ferguson, Marena Trinidad, Nicholas T. Ingolia, Jamie H. D. Cate, Santi Mestre-Fos

Analyses of translation factors Dbp1 and Ded1 reveal the cellular response to heat stress to be separable from stress granule formation

Cell Reports(2024)10.1016/j.celrep.2024.115059

N/A

0.169DataRank · unranked

2 citations

Emily Nicole Powers, Matej Siketanc, Camila I. Sousa, Kendra Reynaud, Marko Jovanovic +4 more

Double stranded DNA breaks and genome editing trigger loss of ribosomal protein RPS27A

FEBS Journal(2021)10.1111/febs.16321

N/A

0DataRank · unranked

27 citations

Elena Zelin, Phillip A. Frankino, Zuriah A. Meacham, Samantha G. Fernandez, Nicholas T. Ingolia +2 more

Dysregulated mRNA Translation in the G2019S LRRK2 and LRRK2 Knock-Out Mouse Brains

eNeuro(2021)10.1523/eneuro.0310-21.2021

N/A

0DataRank · unranked

14 citations

Xiling Yin, Ian Martin, Yulan Xiong, Stephen M. Eacker, Nicholas T. Ingolia +3 more

Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function

PLoS Genetics(2021)10.1371/journal.pgen.1009521

N/A

0DataRank · unranked

9 citations

Molly Brothers, Michael Ly, Nicholas T. Ingolia, Kendra Reynaud

Low-bias ncRNA Libraries using Ordered Two-Template Relay: Serial Template Jumping by a Modified Retroelement Reverse Transcriptase

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.30.442027

N/A

0DataRank · unranked

8 citations

Lucas Ferguson, Morayma M. Temoche-Diaz, Xiao‐Man Liu, Sydney C. Pimentel, Nicholas T. Ingolia +3 more

A specific eIF4A paralog facilitates LARP1-mediated translation repression during mTORC1 inhibition

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.18.460932

N/A

0DataRank · unranked

1 citations

Mari Mito, Kazuhiro Kashiwagi, Mari Takahashi, Takuhiro Ito, Nicholas T. Ingolia +2 more

Surveying the global landscape of post-transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.09.455688

N/A

0DataRank · unranked

1 citations

Anna McGeachy, David Noble, Zuriah A. Meacham, Nicholas T. Ingolia, Kendra Reynaud

Robust T cell activation requires an eIF3-driven burst in T cell receptor translation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.04.463005

N/A

0DataRank · unranked

0 citations

Lucas Ferguson, Grant H. Chin, Benjamin E. Smith, Ryan Apathy, Theodore L. Roth +6 more

Ribosome stalling during selenoprotein translation exposes a ferroptosis vulnerability

Nature Chemical Biology(2022)10.1038/s41589-022-01033-3

N/A

0DataRank · unranked

134 citations

Lucas Ferguson, Kirandeep K. Deol, Melissa A. Roberts, Leslie Magtanong, Joseph M. Hendricks +10 more

Plasmid and Sequencing Library Preparation for CRISPRi Barcoded Expression Reporter Sequencing (CiBER-seq) in Saccharomyces cerevisiae

BIO-PROTOCOL(2022)10.21769/bioprotoc.4376

N/A

0DataRank · unranked

7 citations

Zuriah A. Meacham, Nicholas T. Ingolia, Ryan Muller

Ribosome stalling during selenoprotein translation exposes a ferroptosis vulnerability in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.11.487892

N/A

0DataRank · unranked

2 citations

Lucas Ferguson, Kirandeep K. Deol, Melissa A. Roberts, Leslie Magtanong, Michael C. Bassik +4 more

Molecular recording of calcium concentration via calcium-dependent protein proximity labeling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.14.500122

N/A

0DataRank · unranked

1 citations

Adeline J. H. Yong, Erin E. Aisenberg, Wei Wang, Ted M. Dawson, Valina L. Dawson +5 more

Formaldehyde regulates S -adenosylmethionine biosynthesis and one-carbon metabolism

Science(2023)10.1126/science.abp9201

N/A

0DataRank · unranked

80 citations

Kevin J. Bruemmer, Joel D. W. Toh, Eva J. Ge, Logan Tenney, Carl C. Ward +11 more

Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells

Nature Methods(2023)10.1038/s41592-023-02028-1

N/A

0DataRank · unranked

61 citations

Heather E. Upton, Sydney C. Pimentel, Amanda Mok, Liana F. Lareau, Kathleen L. Collins +2 more

Surveying the global landscape of post-transcriptional regulators

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-00999-5

N/A

0DataRank · unranked

19 citations

Anna McGeachy, David Noble, Zuriah A. Meacham, Nicholas T. Ingolia, Kendra Reynaud

Streamlined and sensitive mono- and diribosome profiling in yeast and human cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.01.526718

N/A

0DataRank · unranked

6 citations

Heather E. Upton, Sydney C. Pimentel, Amanda Mok, Liana F. Lareau, Kathleen Collins +2 more

eIF3 engages with 3’-UTR termini of highly translated mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.11.566681

N/A

0DataRank · unranked

4 citations

Lucas Ferguson, Marena Trinidad, Nicholas T. Ingolia, Jamie H. D. Cate, Santi Mestre-Fos

Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.16.524343

N/A

0DataRank · unranked

1 citations

Lucas Ferguson, Nicholas T. Ingolia, Samantha G. Fernandez

Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.11.540079

N/A

0DataRank · unranked

1 citations

Nicholas J. McGlincy, Nicholas T. Ingolia, Paige D. Diamond

Depletion of cap-binding protein eIF4E dysregulates amino acid metabolic gene expression

Molecular Cell(2024)10.1016/j.molcel.2024.05.008

N/A

0DataRank · unranked

10 citations

Nicholas J. McGlincy, Nicholas T. Ingolia, Paige D. Diamond

Improved precision, sensitivity, and adaptability of ordered two-template relay cDNA library preparation for RNA sequencing

RNA(2024)10.1261/rna.080318.124

N/A

0DataRank · unranked

3 citations

Heather E. Upton, Sydney C. Pimentel, Chris Jeans, Nicholas T. Ingolia, Kathleen Collins +1 more

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.09.612016

N/A

0DataRank · unranked

35 citations

Leron W. Kok, Jonathan M. Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun +38 more

Precise measurement of molecular phenotypes with barcode-based CRISPRi systems

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.21.600132

N/A

0DataRank · unranked

4 citations

Nicholas T. Ingolia, Joseph H. Lobel

Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.01.578453

N/A

0DataRank · unranked

1 citations

Nicholas T. Ingolia, Joseph H. Lobel

eIF3 engages with 3’-UTR termini of highly translated mRNAs

eLife(2025)10.7554/elife.102977.3

N/A

0DataRank · unranked

1 citations

Lucas Ferguson, Marena Trinidad, Nicholas T. Ingolia, Jamie H. D. Cate, Santi Mestre-Fos

Precise measurement of molecular phenotypes with barcode-based CRISPRi systems

Genome biology(2025)10.1186/s13059-025-03610-w

N/A

0DataRank · unranked

1 citations

Nicholas T. Ingolia, Joseph H. Lobel

Translation elongation as a rate limiting step of protein production

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.27.568910

N/A

0DataRank · unranked

18 citations

Lou Devanneaux, Ryan Muller, Anna V. Freitas, Zuriah A. Meacham, Maria McSharry +5 more

Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A

Cell chemical biology(2020)10.1016/j.chembiol.2020.11.008

N/A

0DataRank · unranked

93 citations

Miwako Asanuma, Mari Takahashi, Yuichi Shichino, Mari Mito, Koichi Fujiwara +8 more

Defects in mRNA Translation in LRRK2-Mutant hiPSC-Derived Dopaminergic Neurons Lead to Dysregulated Calcium Homeostasis

Cell stem cell(2020)10.1016/j.stem.2020.08.002

N/A

0DataRank · unranked

59 citations

Xiling Yin, Aanishaa Jhaldiyal, Mohammed Repon Khan, Ian Martin, Zhong Xie +11 more

CiBER-seq dissects genetic networks by quantitative CRISPRi profiling of expression phenotypes

Science(2020)10.1126/science.abb9662

N/A

0DataRank · unranked

48 citations

Zuriah A. Meacham, Lucas Ferguson, Nicholas T. Ingolia, Ryan Muller

A genome-scale CRISPR interference guide library enables comprehensive phenotypic profiling in yeast

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.11.988105

N/A

0DataRank · unranked

8 citations

Zuriah A. Meacham, Kendra Swain, Ryan Muller, Rachel Baum, Nicholas T. Ingolia +1 more

CiBER-seq dissects genetic networks by quantitative CRISPRi profiling of expression phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.29.015057

N/A

0DataRank · unranked

8 citations

Zuriah A. Meacham, Lucas Ferguson, Nicholas T. Ingolia, Ryan Muller

Low-bias ncRNA libraries using ordered two-template relay: Serial template jumping by a modified retroelement reverse transcriptase

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2107900118

N/A

0DataRank · unranked

76 citations

Lucas Ferguson, Morayma M. Temoche-Diaz, Xiao‐Man Liu, Sydney C. Pimentel, Nicholas T. Ingolia +3 more

A genome-scale CRISPR interference guide library enables comprehensive phenotypic profiling in yeast

BMC Genomics(2021)10.1186/s12864-021-07518-0

N/A

0DataRank · unranked

45 citations

Zuriah A. Meacham, Kendra Reynaud, Ryan Muller, Rachel Baum, Nicholas T. Ingolia +1 more

Nicholas T. Ingolia

Indexed papers

Top data-sharing exemplar

Papers