Avik Biswas

Also affiliated with University of California San Diego

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants”.

Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants

Science Advances(2023)10.1126/sciadv.adg5953

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0.843DataRank · unranked

38 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +14 more

Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins

The Journal of Physical Chemistry B(2022)10.1021/acs.jpcb.2c06123

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0DataRank · unranked

12 citations

Avik Biswas, Allan Haldane, Ronald M. Levy, Indrani Choudhuri

Limits to detecting epistasis in the fitness landscape of HIV

PLoS ONE(2022)10.1371/journal.pone.0262314

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0DataRank · unranked

11 citations

Allan Haldane, Ronald M. Levy, Avik Biswas

Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid

Journal of Computer-Aided Molecular Design(2022)10.1007/s10822-022-00446-5

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8 citations

Avik Biswas, R. S. K. Vijayan, Pierrick Craveur, Stefano Forli, Arthur J. Olson +6 more

Mechanisms of HIV-1 Integrase Resistance to Dolutegravir and Potent Inhibition of Drug Resistant Variants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.04.519057

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0DataRank · unranked

3 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +12 more

Kinetic co-evolutionary models predict the temporal emergence of HIV resistance mutations under drug selection pressure

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.30.518575

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0DataRank · unranked

1 citations

Indrani Choudhuri, Eddy Arnold, Dmitry Lyumkis, Allan Haldane, Ronald M. Levy +1 more

Elucidating the molecular determinants for binding modes of a third-generation HIV-1 integrase strand transfer inhibitor: Importance of side chain and solvent reorganization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.29.569269

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0DataRank · unranked

0 citations

Avik Biswas, Dmitry Lyumkis, Ronald Levy, Nanjie Deng, Qinfang Sun

Kinetic coevolutionary models predict the temporal emergence of HIV-1 resistance mutations under drug selection pressure

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2316662121

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0DataRank · unranked

18 citations

Indrani Choudhuri, Eddy Arnold, Dmitry Lyumkis, Allan Haldane, Ronald M. Levy +1 more

Elucidating the Molecular Determinants of the Binding Modes of a Third-Generation HIV-1 Integrase Strand Transfer Inhibitor: The Importance of Side Chain and Solvent Reorganization

Viruses(2024)10.3390/v16010076

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6 citations

Avik Biswas, Dmitry Lyumkis, Ronald Levy, Nanjie Deng, Qinfang Sun

Oligomeric HIV-1 Integrase Structures Reveal Functional Plasticity for Intasome Assembly and RNA Binding

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.26.577436

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4 citations

Zelin Shan, Tung Dinh, Avik Biswas, Sooin Jang, Juliet Greenwood +16 more

Using phage display for rational engineering of a higher affinity humanized 3’phosphohistidine-specific antibody

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.04.621849

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0DataRank · unranked

1 citations

Rajasree Kalagiri, Gianluca Veggiani, Robyn L. Stanfield, Indrani Choudhuri, Margaux Sala +9 more

Oligomeric HIV-1 integrase structures reveal functional plasticity for intasome assembly and RNA binding

Nature Communications(2025)10.1038/s41467-025-64479-8

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4 citations

Zelin Shan, Tung Dinh, Avik Biswas, Sooin Jang, Juliet Greenwood +16 more

Evolutionary Sequence and Structural Basis for the Epistatic Origins of Drug Resistance in HIV

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651576

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2 citations

Indrani Choudhuri, Kenneth Huang, Qinfang Sun, Andrej Săli, Ignacia Echeverria +4 more

De Novo Hydration of Cryo-EM Reconstructions through Molecular Dynamics Simulations of the Excess Chemical Potential

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655847

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0DataRank · unranked

0 citations

Sriram Aiyer, Avik Biswas, Allan Haldane, Sompriya Chatterjee, Nobuyuki Matubayasi +3 more

The role of epistasis in determining the fitness landscape of HIV proteins

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.16.448646

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0DataRank · unranked

1 citations

Allan Haldane, Ronald M. Levy, Avik Biswas

Using phage display for rational engineering of a higher-affinity humanized 3’ phosphohistidine-specific antibody

Communications Chemistry(2025)10.1038/s42004-025-01768-9

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0DataRank · unranked

0 citations

Rajasree Kalagiri, Gianluca Veggiani, Robyn L. Stanfield, Indrani Choudhuri, Margaux Sala +9 more