Alistair N. Boettiger

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 22 papers. Top paper: “Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells”.

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells

Science(2018)10.1126/science.aau1783

N/A

10.1DataRank · unranked

1078 citations

Leslie J. Mateo, Jun-Han Su, Nicholas A. Sinnott-Armstrong, Mirae Baichoo, Seon Kinrot +4 more

How subtle changes in 3D structure can create large changes in transcription

eLife(2021)10.7554/elife.64320

N/A

3.8DataRank · unranked

168 citations

Antonina Hafner, Alistair N. Boettiger, Jordan Yupeng Xiao

Loop stacking organizes genome folding from TADs to chromosomes

Molecular Cell(2023)10.1016/j.molcel.2023.04.008

N/A

3.7DataRank · unranked

121 citations

Minhee Park, Scott E. Berger, Sedona E. Murphy, Elphège P. Nora, Alistair N. Boettiger +1 more

Quantitative cytogenetics reveals molecular stoichiometry and longitudinal organization of meiotic chromosome axes and loops

PLoS Biology(2020)10.1371/journal.pbio.3000817

N/A

1.7DataRank · unranked

66 citations

Kei Yamaya, Baptiste Roelens, Alistair N. Boettiger, Simone Köhler, Anne M. Villeneuve +1 more

Loop stacking organizes genome folding from TADs to chromosomes

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2022.07.13.499982

N/A

0.606DataRank · unranked

15 citations

Minhee Park, Scott E. Berger, Elphège P. Nora, Alistair N. Boettiger, Antonina Hafner

How subtle changes in 3D structure can create large changes in transcription

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.22.351395

N/A

0DataRank · unranked

11 citations

Antonina Hafner, Alistair N. Boettiger, Jordan Yupeng Xiao

Polycomb-mediated Genome Architecture Enables Long-range Spreading of H3K27 methylation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.27.223438

N/A

0DataRank · unranked

19 citations

Kathryn E. Yost, Sedona E. Murphy, Andreas Magg, Yicheng Long, M. Ryan Corces +6 more

Tracing DNA paths and RNA profiles in cultured cells and tissues with ORCA

Nature Protocols(2021)10.1038/s41596-020-00478-x

N/A

0DataRank · unranked

79 citations

Nicholas A. Sinnott-Armstrong, Alistair N. Boettiger, Leslie J. Mateo

Deep learning connects DNA traces to transcription to reveal predictive features beyond enhancer–promoter contact

Nature Communications(2021)10.1038/s41467-021-23831-4

N/A

0DataRank · unranked

32 citations

Leslie J. Mateo, Sedona E. Murphy, Alistair N. Boettiger, Aparna R. Rajpurkar

Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2201883119

N/A

0DataRank · unranked

113 citations

Kathryn E. Yost, Sedona E. Murphy, Andreas Magg, Yicheng Long, M. Ryan Corces +7 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.16.520793

N/A

0DataRank · unranked

0 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +8 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

0DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Nature Communications(2023)10.1038/s41467-023-40658-3

N/A

0DataRank · unranked

10 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +10 more

Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527380

N/A

0DataRank · unranked

8 citations

David M. Kingsley, Alistair N. Boettiger, Tzu-Chiao Hung

Single-cell chromatin state transitions during epigenetic memory formation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560616

N/A

0DataRank · unranked

7 citations

Carolina Rios-Martinez, Abby R. Thurm, Michaela M. Hinks, Benjamin R. Doughty, Joydeb Sinha +6 more

Boundary stacking interactions enable cross-TAD enhancer–promoter communication during limb development

Nature Genetics(2024)10.1038/s41588-023-01641-2

N/A

0DataRank · unranked

63 citations

David M. Kingsley, Alistair N. Boettiger, Tzu-Chiao Hung

Polycomb repression of Hox genes involves spatial feedback but not domain compaction or phase transition

Nature Genetics(2024)10.1038/s41588-024-01661-6

N/A

0DataRank · unranked

43 citations

Alistair N. Boettiger, Sedona E. Murphy

Super-enhancer interactomes from single cells link clustering and transcription

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.08.593251

N/A

0DataRank · unranked

14 citations

Antonina Hafner, Sadhana Gaddam, Ke Wang, Alistair N. Boettiger, Derek J. Le

Enhancer activation from transposable elements in extrachromosomal DNA

Nature Cell Biology(2025)10.1038/s41556-025-01788-6

N/A

0DataRank · unranked

13 citations

Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Aarohi Bhargava-Shah, Christy Luong +14 more

Two unrelated distal genes activated by a shared enhancer benefit from localizing inside the same small topological domain

Genes & Development(2025)10.1101/gad.352235.124

N/A

0DataRank · unranked

5 citations

Marjon J.A.M. Verstegen, Sjoerd J. D. Tjalsma, Peter H.L. Krijger, Kavvya Gupta, Minhee Park +3 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

UNC Libraries(2025)10.17615/vmcs-0c51

N/A

0DataRank · unranked

0 citations

Caterina Strambio‐De‐Castillia, Lindsay Lee, Shreya Mishra, Bing Ren, Alistair N. Boettiger +10 more

Advances in Chromatin Imaging at Kilobase-Scale Resolution

Trends in Genetics(2020)10.1016/j.tig.2019.12.010

N/A

0DataRank · unranked

126 citations

Sedona E. Murphy, Alistair N. Boettiger