Jonathan W. Pillow

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “Scalable variational inference for low-rank spatio-temporal receptive fields”.

Scalable variational inference for low-rank spatio-temporal receptive fields

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.12.503812

N/A

0.104DataRank · unranked

1 citations

Kiersten Ruda, Greg D. Field, Jonathan W. Pillow, Lea Duncker

Poisson balanced spiking networks

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008261

N/A

0DataRank · unranked

35 citations

Jonathan W. Pillow, Camille E. Rullán Buxó

Mice alternate between discrete strategies during perceptual decision-making

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.19.346353

N/A

0DataRank · unranked

38 citations

Nicholas Roy, Iris R. Stone, Anne E Urai, Anne K. Churchland, Alexandre Pouget +2 more

Identifying signal and noise structure in neural population activity with Gaussian process factor models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.217984

N/A

0DataRank · unranked

15 citations

Mikio Aoi, Yiyi Yu, Spencer L. Smith, Jonathan W. Pillow, Stephen Keeley

Extracting the Dynamics of Behavior in Decision-Making Experiments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.109678

N/A

0DataRank · unranked

5 citations

Ji Hyun Bak, Athena Akrami, Carlos D. Brody, Jonathan W. Pillow, Nicholas Roy

Extracting the dynamics of behavior in sensory decision-making experiments

Neuron(2021)10.1016/j.neuron.2020.12.004

N/A

0DataRank · unranked

128 citations

Ji Hyun Bak, Athena Akrami, Carlos D. Brody, Jonathan W. Pillow, Nicholas Roy

Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods

Journal of Neuroscience Methods(2021)10.1016/j.jneumeth.2021.109173

N/A

0DataRank · unranked

73 citations

Jeffrey L. Gauthier, Jonathan W. Pillow, David W. Tank, Adam S. Charles, Alexander Song

Opponent control of behavior by dorsomedial striatal pathways depends on task demands and internal state

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.23.453573

N/A

0DataRank · unranked

16 citations

Iris R. Stone, Lucas Pinto, Zoe C. Ashwood, Jorge M. Iravedra Garcia, Alison L. Herman +9 more

Efficient decoding of large-scale neural population responses with Gaussian-process multiclass regression

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.26.457795

N/A

0DataRank · unranked

1 citations

Benjamin Scholl, Jacob L. Yates, Jonathan W. Pillow, C. Daniel Greenidge

Mice alternate between discrete strategies during perceptual decision-making

Nature Neuroscience(2022)10.1038/s41593-021-01007-z

N/A

0DataRank · unranked

248 citations

Nicholas Roy, Iris R. Stone, Anne E Urai, Anne K. Churchland, Alexandre Pouget +2 more

Probing the Relationship Between Latent Linear Dynamical Systems and Low-Rank Recurrent Neural Network Models

Neural Computation(2022)10.1162/neco_a_01522

N/A

0DataRank · unranked

26 citations

Srdjan Ostojic, Jonathan W. Pillow, Adrian Valente

Detecting and correcting false transients in calcium imaging

Nature Methods(2022)10.1038/s41592-022-01422-5

N/A

0DataRank · unranked

23 citations

Sue Ann Koay, Edward H. Nieh, David W. Tank, Jonathan W. Pillow, Adam S. Charles +1 more

A General Framework for Inferring Bayesian Ideal Observer Models from Psychophysical Data

eNeuro(2022)10.1523/eneuro.0144-22.2022

N/A

0DataRank · unranked

8 citations

Benjamin Naecker, Iona R. McLean, Bas Rokers, Jonathan W. Pillow, Emily A. Cooper +1 more

Correcting motion induced fluorescence artifacts in two-channel neural imaging

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010421

N/A

0DataRank · unranked

1 citations

Kevin S. Chen, Andrew M. Leifer, Jonathan W. Pillow, Matthew S. Creamer

A new theoretical framework jointly explains behavioral and neural variability across subjects performing flexible decision-making

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.28.518207

N/A

0DataRank · unranked

25 citations

V. Tang, Mikio Aoi, Jonathan W. Pillow, Valerio Mante, David Sussillo +2 more

One-to-one mapping between deep network units and real neurons uncovers a visual population code for social behavior

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500505

N/A

0DataRank · unranked

12 citations

Adam J. Calhoun, Nivedita Rangarajan, Maxwell H. Turner, Jonathan W. Pillow, Mala Murthy +1 more

Temporal integration is a robust feature of perceptual decisions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.25.513647

N/A

0DataRank · unranked

1 citations

Jaime de la Rocha, Cristina Pericas, Leor N. Katz, Alexander C. Huk, Jonathan W. Pillow +1 more

Temporal integration is a robust feature of perceptual decisions

eLife(2023)10.7554/elife.84045

N/A

0DataRank · unranked

31 citations

Jaime de la Rocha, Cristina Pericas, Leor N. Katz, Alexander C. Huk, Jonathan W. Pillow +1 more

Scalable Variational Inference for Low-Rank Spatiotemporal Receptive Fields

Neural Computation(2023)10.1162/neco_a_01584

N/A

0DataRank · unranked

4 citations

Kiersten M. Ruda, Greg D. Field, Jonathan W. Pillow, Lea Duncker

Efficient Decoding of Large-Scale Neural Population Responses With Gaussian-Process Multiclass Regression

Neural Computation(2023)10.1162/neco_a_01630

N/A

0DataRank · unranked

1 citations

Benjamin Scholl, Jacob L. Yates, Jonathan W. Pillow, C. Daniel Greenidge

Brain-wide representations of prior information in mouse decision-making

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.04.547684

N/A

0DataRank · unranked

58 citations

Félix Hubert, Luigi Acerbi, Brandon Benson, Julius Benson, Daniel Birman +54 more

Flow-field inference from neural data using deep recurrent networks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567136

N/A

0DataRank · unranked

9 citations

Thomas Zhihao Luo, Tankut Can, Kamesh Krishnamurthy, Jonathan W. Pillow, Carlos D. Brody +1 more

Mapping model units to visual neurons reveals population code for social behaviour

Nature(2024)10.1038/s41586-024-07451-8

N/A

0DataRank · unranked

38 citations

Adam J. Calhoun, Nivedita Rangarajan, Elise Ireland, Maxwell H. Turner, Jonathan W. Pillow +2 more

The fly connectome reveals a path to the effectome

Nature(2024)10.1038/s41586-024-07982-0

N/A

0DataRank · unranked

36 citations

Max Jameson Aragon, Sven Dorkenwald, Arie Matsliah, Amy Sterling, Philipp Schlegel +8 more

Neural population dynamics underlying evidence accumulation in multiple rat brain regions

eLife(2024)10.7554/elife.84955

N/A

0DataRank · unranked

7 citations

Carlos D. Brody, Jonathan W. Pillow, Brian DePasquale

Cross Talk opposing view: Marr's three levels of analysis are not useful as a framework for neuroscience

The Journal of Physiology(2024)10.1113/jp279550

N/A

0DataRank · unranked

3 citations

Jonathan W. Pillow

Active Learning for Discrete Latent Variable Models

Neural Computation(2024)10.1162/neco_a_01646

N/A

0DataRank · unranked

10 citations

Zoe C. Ashwood, Jonathan W. Pillow, Aditi Jha

Sparse-Coding Variational Autoencoders

Neural Computation(2024)10.1162/neco_a_01715

N/A

0DataRank · unranked

6 citations

Gabriel Barello, Daniel Greenidge, Adam S. Charles, Jonathan W. Pillow, Victor Geadah

Pre-existing visual responses in a projection-defined dopamine population explain individual learning trajectories

Current Biology(2024)10.1016/j.cub.2024.09.045

N/A

0DataRank · unranked

6 citations

Yoel Sanchez Araujo, Brenna McMannon, Miranta Louka, Akhil Bandi, Laura M. Haetzel +5 more

Disentangling the Roles of Distinct Cell Classes with Cell-Type Dynamical Systems

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.08.602520

N/A

0DataRank · unranked

4 citations

Diksha Gupta, Carlos D. Brody, Jonathan W. Pillow, Aditi Jha

Modeling Complex Animal Behavior with Latent State Inverse Reinforcement Learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.13.623515

N/A

0DataRank · unranked

0 citations

Victor Geadah, Jonathan W. Pillow, Aditi Jha

Continuous partitioning of neuronal variability

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.23.666404

N/A

0DataRank · unranked

2 citations

Adam S. Charles, Jonathan W. Pillow, Anuththara Rupasinghe

Inferring learning rules during de novo task learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.29.679295

N/A

0DataRank · unranked

1 citations

Jonathan W. Pillow, Victor Geadah

Learning neural dynamics through instructive signals

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.30.673300

N/A

0DataRank · unranked

0 citations

Juncal Arbelaiz, Jonathan W. Pillow, Rich Pang

Modeling statistical dependencies in multi-region spike train data

Current Opinion in Neurobiology(2020)10.1016/j.conb.2020.11.005

N/A

0DataRank · unranked

55 citations

David M. Zoltowski, Mikio Aoi, Jonathan W. Pillow, Stephen Keeley

Fast Optimization of Robust Transcriptomics Embeddings using Probabilistic Inference Autoencoder Networks for multi-Omics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.16.686778

N/A

0DataRank · unranked

0 citations

David Turner, Hannah Feinberg, Victor Eduardo Nieto Caballero, Dan Yuan, Nathaniel Scott +10 more