🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Saugat Poudel

University of California San Diego

ORCID: 0000-0002-3732-2463

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media”.

Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media

GigaScience(2021)10.1093/gigascience/giaa156

N/A

0.548DataRank · unranked

15 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii

mSystems(2024)10.1128/msystems.00606-23

N/A

0.343DataRank · unranked

7 citations

Saugat Poudel, Anand V. Sastry, Kevin Rychel, Richard Szubin, Nicholas Dillon +7 more

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.070904

N/A

0DataRank · unranked

3 citations

Saugat Poudel, Hannah Tsunemoto, Richard Szubin, Michael J. Meehan, Connor A. Olson +15 more

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.079962

N/A

0DataRank · unranked

2 citations

Yara Seif, Hannah Tsunemoto, Saugat Poudel, Michael J. Meehan, Richard Szubin +15 more

Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.25.061994

N/A

0DataRank · unranked

0 citations

Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M. Monk +2 more

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.079640

N/A

0DataRank · unranked

0 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Optimal dimensionality selection for independent component analysis of transcriptomic data

BMC Bioinformatics(2021)10.1186/s12859-021-04497-7

N/A

0DataRank · unranked

67 citations

Cameron Lamoureux, Saugat Poudel, Bernhard Ø. Palsson, Anand V. Sastry, John Luke McConn

Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens

mSystems(2021)10.1128/msystems.00981-20

N/A

0DataRank · unranked

45 citations

Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M. Monk +2 more

Revealing 29 sets of independently modulated genes in Staphylococcus aureus , their regulators and role in key physiological responses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997296

N/A

0DataRank · unranked

8 citations

Hannah Tsunemoto, Yara Seif, Anand V. Sastry, Richard Szubin, Sibei Xu +7 more

Optimal dimensionality selection for independent component analysis of transcriptomic data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445885

N/A

0DataRank · unranked

11 citations

Cameron Lamoureux, Saugat Poudel, Bernhard Ø. Palsson, Anand V. Sastry, John Luke McConn

Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.426013

N/A

0DataRank · unranked

4 citations

Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard Ø. Palsson, Ye Gao

Mathematical models to study the biology of pathogens and the infectious diseases they cause

iScience(2022)10.1016/j.isci.2022.104079

N/A

0DataRank · unranked

22 citations

Jonathan M. Monk, Saugat Poudel, Charles J. Norsigian, Anand V. Sastry, Chen Liao +15 more

Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains TCH1516 and LAC

mSystems(2023)10.1128/msystems.00279-23

N/A

0DataRank · unranked

14 citations

Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard Ø. Palsson, Ye Gao

A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes

mSystems(2024)10.1128/msystems.00736-24

N/A

0DataRank · unranked

11 citations

Daniel C. Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L. Baker, Yoshihiro Toya +7 more

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility

mSphere(2021)10.1128/msphere.00443-21

N/A

0DataRank · unranked

21 citations

Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu +5 more

Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077271

N/A

0DataRank · unranked

7 citations

Nick Dillon, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin +4 more