Abigail L. Manson

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.2Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Global phylogenomic analyses of Mycobacterium abscessus provide context for non cystic fibrosis infections and the evolution of antibiotic resistance

Nature Communications(2021)10.1038/s41467-021-25484-9

Top 10%

2.2DataRank

Top 10%49 citations

Chhavi Gupta, Abigail L. Manson, Jan A. Nguyen, Asli Bahadirli-Talbott, Nicole Parrish +3 more

Papers

Driven by 39 papers — median percentile 90. Top paper: “Global phylogenomic analyses of Mycobacterium abscessus provide context for non cystic fibrosis infections and the evolution of antibiotic resistance”.

Global phylogenomic analyses of Mycobacterium abscessus provide context for non cystic fibrosis infections and the evolution of antibiotic resistance

Nature Communications(2021)10.1038/s41467-021-25484-9

Top 10%

2.2DataRank

Top 10%49 citations

Chhavi Gupta, Abigail L. Manson, Jan A. Nguyen, Asli Bahadirli-Talbott, Nicole Parrish +3 more

Modulating the evolutionary trajectory of tolerance using antibiotics with different metabolic dependencies

Nature Communications(2022)10.1038/s41467-022-30272-0

N/A

2.0DataRank · unranked

70 citations

Ian W. Andrews, Alexandra Grote, Abigail L. Manson, Miguel A. Alcantar, Ashlee M. Earl +2 more

Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

BMC Microbiology(2021)10.1186/s12866-021-02106-4

N/A

1.2DataRank · unranked

31 citations

Wen‐Chi Chou, Abigail L. Manson, Henry L. Schreiber, Bruce J. Walker, Christopher A. Desjardins +10 more

Discovery of a structural class of antibiotics with explainable deep learning

Nature(2023)10.1038/s41586-023-06887-8

N/A

0.912DataRank · unranked

435 citations

Erica J. Zheng, Jacqueline A. Valeri, Nina M. Donghia, Melis N. Anahtar, Satotaka Omori +16 more

Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes

Briefings in Bioinformatics(2023)10.1093/bib/bbad050

N/A

0.870DataRank · unranked

30 citations

Terrance Shea, Christina A. Cuomo, Bruce J. Walker, Regina C. LaRocque, Abigail L. Manson +3 more

Adaptive evolution of virulence and persistence in carbapenem-resistant Klebsiella pneumoniae

Nature Medicine(2020)10.1038/s41591-020-0825-4

N/A

0.869DataRank · unranked

327 citations

Julian R. Braxton, Carlos A. Rodríguez-Osorio, Anna P. Zagieboylo, Li Li, Alejandro Pironti +9 more

Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women

Nature Microbiology(2022)10.1038/s41564-022-01107-x

N/A

0.783DataRank · unranked

184 citations

Henry L. Schreiber, Timothy J. Straub, Lucas R. van Dijk, Ryan A. Bronson, Benjamin Olson +20 more

StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities

Genome biology(2022)10.1186/s13059-022-02630-0

N/A

0.710DataRank · unranked

113 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

BMC Genomics(2012)10.1186/1471-2164-13-120

N/A

0.701DataRank · unranked

106 citations

Brian Weiner, Sang Park, Ilan Wapinski, Sahadevan Raman, Gregory Dolganov +21 more

Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice

Nature Microbiology(2020)10.1038/s41564-020-0683-3

N/A

0.697DataRank · unranked

103 citations

Wen‐Chi Chou, Abigail L. Manson, Peter Rogov, Thomas Abeel, James Bochicchio +8 more

Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway

Cell Host & Microbe(2024)10.1016/j.chom.2023.12.001

N/A

0.696DataRank · unranked

21 citations

Bar Piscon, Abigail L. Manson, Boaz Adani, Helit Cohen, Jonathan Livny +3 more

QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

BMC Genomics(2020)10.1186/s12864-020-6486-3

N/A

0.584DataRank · unranked

48 citations

Arlin Keo, Bruce J. Walker, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl +2 more

Genes Contributing to the Unique Biology and Intrinsic Antibiotic Resistance of Enterococcus faecalis

mBio(2020)10.1128/mbio.02962-20

N/A

0.584DataRank · unranked

48 citations

Rauf Salamzade, Elizabeth M. Selleck, Noelle C. Bryan, Suelen Scarpa de Mello, Abigail L. Manson +2 more

Global diversity of enterococci and description of 18 previously unknown species

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2310852121

N/A

0.581DataRank · unranked

47 citations

François Lebreton, Rauf Salamzade, Terrance Shea, Melissa J. Martin, Katharina Schaufler +16 more

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

Genome Medicine(2022)10.1186/s13073-022-01040-y

N/A

0.571DataRank · unranked

44 citations

Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma +25 more

zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters

Nucleic Acids Research(2025)10.1093/nar/gkaf045

N/A

0.522DataRank · unranked

13 citations

Patricia Q. Tran, Cody Martin, Abigail L. Manson, Michael S. Gilmore, Ashlee M. Earl +3 more

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

Nature Communications(2024)10.1038/s41467-024-53829-7

N/A

0.414DataRank · unranked

9 citations

Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson +13 more

Global diversity of enterococci and description of 18 novel species

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.540996

N/A

0.394DataRank · unranked

11 citations

François Lebreton, Rauf Salamzade, Melissa J. Martin, Katharina Schaufler, Aysun Urhan +14 more

SAFPred: synteny-aware gene function prediction for bacteria using protein embeddings

Bioinformatics(2024)10.1093/bioinformatics/btae328

N/A

0.383DataRank · unranked

6 citations

Bianca-Maria Cosma, Ashlee M. Earl, Abigail L. Manson, Thomas Abeel, Aysun Urhan

StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.14.431013

N/A

0.360DataRank · unranked

10 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Dynamics of microbiome and resistome in a poultry burger processing line

Food Research International(2024)10.1016/j.foodres.2024.114842

N/A

0.292DataRank · unranked

6 citations

Elisa Pagán, Daniel Berdejo, Colin J. Worby, Mark Young, Abigail L. Manson +4 more

Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species

Briefings in Bioinformatics(2025)10.1093/bib/bbaf589

N/A

0.292DataRank · unranked

6 citations

Célia Souque, Colin J. Worby, Terrance Shea, Nicoletta Commins, Joshua T. Smith +5 more

Fast and exact gap-affine partial order alignment with POASTA

Bioinformatics(2024)10.1093/bioinformatics/btae757

N/A

0.259DataRank · unranked

4 citations

Abigail L. Manson, Ashlee M. Earl, Kiran Garimella, Thomas Abeel, Lucas R. van Dijk

Gut-bladder axis syndrome associated with recurrent UTIs in humans

medRxiv(2021)10.1101/2021.11.15.21266268

N/A

0.241DataRank · unranked

4 citations

Henry L. Schreiber, Timothy J. Straub, Lucas R. van Dijk, Ryan A. Bronson, Benjamin Olson +19 more

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.08.471225

N/A

0.165DataRank · unranked

2 citations

Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma +27 more

SAP: Synteny-aware gene function prediction for bacteria using protein embeddings

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.02.539034

N/A

0.146DataRank · unranked

1 citations

Bianca-Maria Cosma, Ashlee M. Earl, Abigail L. Manson, Thomas Abeel, Aysun Urhan

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582780

N/A

0.119DataRank · unranked

1 citations

Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson +13 more

Loss of LafB activity reverses daptomycin resistance in E. faecium

mBio(2025)10.1128/mbio.00715-25

N/A

0.104DataRank · unranked

1 citations

Bailey J. Schultz, Byoungsook Goh, Alexandra Grote, Terrance Shea, Jacob D. Muscato +7 more

Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.11.430761

N/A

0.104DataRank · unranked

1 citations

Lorrie L. He, Alejandro Pironti, Hannah H. Laibinis, Christoph M. Ernst, Abigail L. Manson +5 more

Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.21.496976

N/A

0.104DataRank · unranked

1 citations

Bar Piscon, Abigail L. Manson, Jonathan Livny, Ashlee M. Earl, Ohad Gal‐Mor +1 more

Efagins – engineerable agents that evolved independently to target the enterococcal cell wall

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.13.693970

N/A

0DataRank · unranked

0 citations

Abigail L. Manson, Joshua T. Smith, Natia Karumidze, Gracie Richards, Suelen Scarpa de Mello +5 more

Benchmarking AlphaFold‐enabled molecular docking predictions for antibiotic discovery

Molecular Systems Biology(2022)10.15252/msb.202211081

N/A

0DataRank · unranked

271 citations

Aarti Krishnan, Erica J. Zheng, H. Stärk, Abigail L. Manson, Ashlee M. Earl +3 more

Clinically relevant mutations in core metabolic genes confer antibiotic resistance

Science(2021)10.1126/science.aba0862

N/A

0DataRank · unranked

362 citations

Sarah C. Bening, Abigail L. Manson, Jonathan Stokes, Michael A. Kohanski, Ahmed H. Badran +5 more

Colon Cancer-Associated Fusobacterium nucleatum May Originate From the Oral Cavity and Reach Colon Tumors via the Circulatory System

Frontiers in Cellular and Infection Microbiology(2020)10.3389/fcimb.2020.00400

N/A

0DataRank · unranked

269 citations

Naseem Maalouf, Abigail L. Manson, Ashlee M. Earl, Lishay Parhi, Johanna Emgård +10 more

Genomic epidemiology and antibiotic susceptibility profiling of uropathogenic Escherichia coli among children in the United States

mSphere(2023)10.1128/msphere.00184-23

N/A

0DataRank · unranked

5 citations

Christi L. McElheny, Abigail L. Manson, Ashlee M. Earl, Nader Shaikh, Yohei Doi +1 more

Utility of Mycobacterium tuberculosis Genome Sequencing Snapshots to Assess Transmission Dynamics Over Time

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad515

N/A

0DataRank · unranked

1 citations

Chuan-Chin Huang, Ana Karina Millones, Róger Calderón, Abigail L. Manson, Judith Jiménez +6 more

The carbapenem inoculum effect provides insight into the molecular mechanisms underlying carbapenem resistance in Enterobacterales

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.23.541813

N/A

0DataRank · unranked

6 citations

Kyra Taylor, Leslie C. Lopez, Jian Su, Joshua T. Smith, Abigail L. Manson +5 more

Rapid Emergence of Resistance to Broad-Spectrum Direct Antimicrobial Activity of Avibactam

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.25.615047

N/A

0DataRank · unranked

1 citations

Shade Rodriguez, Abigail L. Manson, Ashlee M. Earl, Thea Brennan-Krohn, Michelle Nägeli

Single-nucleus transcriptomics illuminates sex differences during murine Escherichia coli pyelonephritis

Research Square(2025)10.21203/rs.3.rs-6976359/v1

N/A

0DataRank · unranked

0 citations

Teri N. Hreha, Abigail L. Manson, Christina A. Collins, Hao Wu, C Georgescu +3 more

Abigail L. Manson

Indexed papers

Top data-sharing exemplar

Papers