Maha R. Farhat

Also affiliated with Massachusetts General Hospital

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.269Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Estimation of country-specific tuberculosis antibiograms using genomic data

medRxiv(2021)10.1101/2021.09.23.21263991

Top 70%

0.165DataRank

Top 70%2 citations

Luca Freschi, Roger Vargas, Matthias Groeschel, Sabira Tahseen, Sk Mahbub Alam +7 more

Papers

Driven by 46 papers — median percentile 26. Top paper: “Exploring gene content with pangene graphs”.

Exploring gene content with pangene graphs

Bioinformatics(2024)10.1093/bioinformatics/btae456

N/A

0.899DataRank · unranked

30 citations

Maximillian G. Marin, Maha R. Farhat, Alexandra P. Lewis

Role of Epistasis in Amikacin, Kanamycin, Bedaquiline, and Clofazimine Resistance in Mycobacterium tuberculosis Complex

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.01164-21

N/A

0.641DataRank · unranked

71 citations

Luca Freschi, Andrea Spitaleri, Sabira Tahseen, Ivan Barilar, Stefan Niemann +5 more

Analysis of the limited M. tuberculosis accessory genome reveals potential pitfalls of pan-genome analysis approaches

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.21.586149

N/A

0.578DataRank · unranked

18 citations

Christoph Wippel, Natalia Quinones-Olvera, Mahboobeh Behruznia, Brendan M. Jeffrey, Michael Harris +9 more

The role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in Mycobacterium tuberculosis complex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.07.443178

N/A

0.454DataRank · unranked

6 citations

Luca Freschi, Andrea Spitaleri, Sabira Tahseen, Ivan Barilar, Stefan Niemann +5 more

Multivariable regression models improve accuracy and sensitive grading of antibiotic resistance mutations in Mycobacterium tuberculosis

Nature Communications(2025)10.1038/s41467-025-57174-1

N/A

0.450DataRank · unranked

9 citations

Sacha Laurent, Paolo Miotto, A Sarah Walker, Leonid Chindelevitch, Carl‐Michael Nathanson +4 more

Estimation of country-specific tuberculosis antibiograms using genomic data

medRxiv(2021)10.1101/2021.09.23.21263991

Top 70%

0.165DataRank

Top 70%2 citations

Luca Freschi, Roger Vargas, Matthias Groeschel, Sabira Tahseen, Sk Mahbub Alam +7 more

Complete genome sequence of a virulent barcoded Mycobacterium tuberculosis str. Erdman commonly used for non-human primate infection studies

Microbiology Resource Announcements(2025)10.1128/mra.01232-24

Top 78%

0.104DataRank

Top 78%1 citations

Michael R. Chase, Natalia Quiñones, Shoko Wakabayashi, Douaa Mugahid, Sarah M. Fortune +3 more

The discovery of genome-wide mutational dependence in naturally evolving populations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.24.497504

N/A

0.104DataRank · unranked

1 citations

Roger Vargas, Maximillian G. Marin, Luca Freschi, Jiaqi Xie, Maha R. Farhat +1 more

Advancing TB research using digitized programmatic data

The International Journal of Tuberculosis and Lung Disease(2021)10.5588/ijtld.21.0325

N/A

0DataRank · unranked

2 citations

Julio Croda, Harry Moultrie, D. S. Silva, Alex Rosenthal, Maha R. Farhat +1 more

Genomic sequence characteristics and the empiric accuracy of short-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.08.438862

N/A

0DataRank · unranked

11 citations

Roger Vargas, Michael A. Harris, Brendan M. Jeffrey, L. Elaine Epperson, David Durbin +9 more

A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis

Nature Communications(2022)10.1038/s41467-022-31236-0

N/A

0DataRank · unranked

84 citations

Chang Ho Yoon, Michael L. Chen, Yasha Ektefaie, Mack Fina, Luca Freschi +5 more

Benchmarking the empirical accuracy of short-read sequencing across theM. tuberculosisgenome

Bioinformatics(2022)10.1093/bioinformatics/btac023

N/A

0DataRank · unranked

68 citations

Roger Vargas, Michael A. Harris, Brendan M. Jeffrey, L. Elaine Epperson, David Durbin +9 more

Updating the approaches to define susceptibility and resistance to anti-tuberculosis agents: implications for diagnosis and treatment

European Respiratory Journal(2022)10.1183/13993003.00166-2022

N/A

0DataRank · unranked

35 citations

Sophia B. Georghiou, Timothy C. Rodwell, Alexei Korobitsyn, Said Abbadi, Kanchan Ajbani +95 more

Whole Genome Sequencing Assessing Impact of Diabetes Mellitus on Tuberculosis Mutations and Type of Recurrence in India

Clinical Infectious Diseases(2022)10.1093/cid/ciab1067

N/A

0DataRank · unranked

9 citations

Liang Chen, Uma Devi Ranganathan, Dileep Kadam, Vijay Vishwanathan, Rahul Lokhande +16 more

Host-pathogen sympatry and differential transmissibility of Mycobacterium tuberculosis complex

medRxiv(2022)10.1101/2022.08.04.22278337

N/A

0DataRank · unranked

3 citations

Francy J. Pérez-Llanos, Roland Diel, Roger Vargas, Vincent Escuyer, Kimberlee A. Musser +13 more

Modern lineages of Mycobacterium tuberculosis were recently introduced in western India and demonstrate increased transmissibility

medRxiv(2022)10.1101/2022.01.04.22268645

N/A

0DataRank · unranked

2 citations

Anju Kagal, Yasha Ektefaie, Luca Freschi, Rajesh Karyakarte, Rahul Lokhande +14 more

Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus

Research Square(2022)10.21203/rs.3.rs-1620528/v1

N/A

0DataRank · unranked

2 citations

Mark R. Sullivan, Kerry McGowen, Evan M. Koch, Eric J. Rubin, Maha R. Farhat +1 more

Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.27.489597

N/A

0DataRank · unranked

1 citations

Mark R. Sullivan, Kerry McGowen, Evan M. Koch, Eric J. Rubin, Maha R. Farhat +1 more

Demographic and Viral-Genetic Analyses of COVID-19 Severity in Bahrain Identify Local Risk Factors and a Protective Effect of Polymerase Mutations

medRxiv(2022)10.1101/2022.08.13.22278740

N/A

0DataRank · unranked

1 citations

Justin Du, Michelle Dressner, Hashmeya Erahim Alwasti, Zahra Al Taif, Fatima Shehab +11 more

Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement

The Lancet Infectious Diseases(2023)10.1016/s1473-3099(22)00875-1

N/A

0DataRank · unranked

88 citations

Martin J. Boeree, Emmanuelle Cambau, Dumitru Chesov, Francesca Conradie, Vivian Cox +23 more

Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2301394120

N/A

0DataRank · unranked

37 citations

Michael J. Luna, Luca Freschi, Maximillian G. Marin, Ruby Froom, Kenan C. Murphy +5 more

Genotype–Phenotype Characterization of Serial Mycobacterium tuberculosis Isolates in Bedaquiline-Resistant Tuberculosis

Clinical Infectious Diseases(2023)10.1093/cid/ciad596

N/A

0DataRank · unranked

19 citations

Linrui Tang, Shaheed Vally Omar, Lavania Joseph, Graeme Meintjes, Gary Maartens +8 more

Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2302033120

N/A

0DataRank · unranked

14 citations

Mark R. Sullivan, Kerry McGowen, Evan M. Koch, Eric J. Rubin, Maha R. Farhat +1 more

Assessment and validation of enrichment and target capture approaches to improve Mycobacterium tuberculosis WGS from direct patient samples

Journal of Clinical Microbiology(2023)10.1128/jcm.00382-23

N/A

0DataRank · unranked

12 citations

Karen R. Jacobson, Yonas Ghebrekristos, Robin M. Warren, Maha R. Farhat, Brendon C. Mann

Transcriptomic responses to antibiotic exposure in Mycobacterium tuberculosis

Antimicrobial Agents and Chemotherapy(2024)10.1128/aac.01185-23

N/A

0DataRank · unranked

20 citations

Yu Zhang, Sravya Kuchibhotla, Anna G. Green, Daniela María Cirillo, Federico Di Marco +4 more

A composite reference standard is needed for bedaquiline antimicrobial susceptibility testing forMycobacterium tuberculosiscomplex

European Respiratory Journal(2024)10.1183/13993003.00391-2024

N/A

0DataRank · unranked

15 citations

Paolo Miotto, Nabila Ismail, Richard Anthony, Christian Utpatel, Matthias Merker +11 more

Precision phenotyping for curating research cohorts of patients with unexplained post-acute sequelae of COVID-19

Med(2024)10.1016/j.medj.2024.10.009

N/A

0DataRank · unranked

14 citations

Jonas Hügel, Jiazi Tian, Jingya Cheng, Ingrid V. Bassett, Douglas S. Bell +13 more

Drug Resistance and Epidemiological Success of Modern Mycobacterium tuberculosis Lineages in Western India

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae240

N/A

0DataRank · unranked

5 citations

Yasha Ektefaie, Anju Kagal, Luca Freschi, Rajesh Karyakarte, Rahul Lokhande +14 more

For Tuberculosis, Not “To Screen or Not to Screen?” but “Who?” and “How?”

Clinical Infectious Diseases(2024)10.1093/cid/ciae058

N/A

0DataRank · unranked

4 citations

Karen R. Jacobson, Maha R. Farhat

Evaluating generalizability of artificial intelligence models for molecular datasets

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.25.581982

N/A

0DataRank · unranked

10 citations

Andrew Shen, Daria Bykova, Maximillian G. Marin, Marinka Zitnik, Maha R. Farhat +1 more

Systematic review and meta-analysis of protocols and yield of direct from sputum sequencing of Mycobacterium tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.04.625621

N/A

0DataRank · unranked

5 citations

Johannes Loubser, Shaheed Vally Omar, C. Glanz, Yasha Ektefaie, Karen R. Jacobson +3 more

Precision Phenotyping for Curating Research Cohorts of Patients with Post-Acute Sequelae of COVID-19 (PASC) as a Diagnosis of Exclusion

medRxiv(2024)10.1101/2024.04.13.24305771

N/A

0DataRank · unranked

2 citations

Jonas Hügel, Jiazi Tian, Jingya Cheng, Ingrid V. Bassett, Douglas S. Bell +13 more

Pitfalls of bacterial pan-genome analysis approaches: a case study of Mycobacterium tuberculosis and two less clonal bacterial species

Bioinformatics(2025)10.1093/bioinformatics/btaf219

N/A

0DataRank · unranked

12 citations

Natalia Quinones-Olvera, Christoph Wippel, Mahboobeh Behruznia, Brendan M. Jeffrey, Michael A. Harris +8 more

Patient Determinants and Effects on Adherence of Adverse Drug Reactions to Tuberculosis Treatment: A Prospective Cohort Analysis

Clinical Infectious Diseases(2025)10.1093/cid/ciae642

N/A

0DataRank · unranked

3 citations

Samantha Malatesta, Tara Carney, Laura F. White, Sarah E Weber, Sarah Thomson +8 more

Contamination rates in serially sampled sputum specimens obtained during tuberculosis treatment to capture culture conversion

Microbiology Spectrum(2025)10.1128/spectrum.00969-25

N/A

0DataRank · unranked

1 citations

Jennifer Rooney, Samantha Malatesta, Noorjahn Rawoot, Tara C. Bouton, Elizabeth J. Ragan +8 more

Future-proofing tuberculosis therapy: framework for concurrent drug and resistance testing development

The Lancet Infectious Diseases(2025)10.1016/s1473-3099(25)00547-x

N/A

0DataRank · unranked

1 citations

Seda Yerlikaya, Susan E. Dorman, Kathleen D. Eisenach, Maha R. Farhat, Nazir Ismail +10 more

The structural context of mutations in proteins predicts their effect on antibiotic resistance

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.23.676583

N/A

0DataRank · unranked

0 citations

Mahbuba Tasmin, Roger Vargas, Maha R. Farhat, Anna G. Green

The structural context of mutations in proteins predicts their effect on antibiotic resistance

eLife(2025)10.7554/elife.109450.1

N/A

0DataRank · unranked

0 citations

Mahbuba Tasmin, Roger Vargas, Maha R. Farhat, Anna G. Green

The structural context of mutations in proteins predicts their effect on antibiotic resistance

eLife(2025)10.7554/elife.109450

N/A

0DataRank · unranked

0 citations

Mahbuba Tasmin, Roger Vargas, Maha R. Farhat, Anna G. Green

Exploring gene content with pangene graphs

PubMed(2024)10.48550/arxiv.2402.16185

N/A

0DataRank · unranked

0 citations

Maximillian G. Marin, Maha R. Farhat, Alexandra P. Lewis

Systematic review of mutations associated with resistance to the new and repurposedMycobacterium tuberculosisdrugs bedaquiline, clofazimine, linezolid, delamanid and pretomanid

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa136

N/A

0DataRank · unranked

212 citations

Nicholas King, Maria Nakhoul, Hongya Zhu, Grant Theron, Claudio U. Köser +2 more

Surgical Resection Compared to Medical Management in localized Mycobacteria Avium Complex Pulmonary Infections-A Case Control Study

Research Square(2020)10.21203/rs.3.rs-122939/v1

N/A

0DataRank · unranked

0 citations

Rakesh K. Dhiman, Michael Lanuti, John Wain, Rocio Hurtado, Christopher J. Richards +3 more

GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning

Genome Medicine(2021)10.1186/s13073-021-00953-4

N/A

0DataRank · unranked

76 citations

Martin Owens, Luca Freschi, Roger Vargas, Maximilian G. Marin, Jody Phelan +4 more

In-host population dynamics of Mycobacterium tuberculosis complex during active disease

eLife(2021)10.7554/elife.61805

N/A

0DataRank · unranked

67 citations

Luca Freschi, Maximillian G. Marin, L. Elaine Epperson, Melissa Smith, Irina Oussenko +5 more

Globally diverse Mycobacterium tuberculosis resistance acquisition: a retrospective geographical and temporal analysis of whole genome sequences

The Lancet Microbe(2021)10.1016/s2666-5247(20)30195-6

N/A

0DataRank · unranked

61 citations

Avika Dixit, Luca Freschi, Maha R. Farhat, Yasha Ektefaie

Fecal microbiota transplantation and Clostridioides difficile infection among privately insured patients in the United States

Journal of Gastroenterology(2021)10.1007/s00535-021-01822-y

N/A

0DataRank · unranked

3 citations

Nathan Palmer, Kathe Fox, Isaac S. Kohane, Maha R. Farhat, Jessica El Halabi

Maha R. Farhat

Indexed papers

Top data-sharing exemplar

Papers