Paul Flicek

Also affiliated with University of Cambridge, Bridge University, Jackson Laboratory, Amgen (United Kingdom), Bioinformatics Institute, The Jackson Laboratory for Genomic Medicine

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

92.0Author DataRank

Indexed papers

24in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 24 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Ensembl gene annotation system

Database(2016)10.1093/database/baw093

Top 2%

8.1DataRank

Top 2%1237 citations

Sarah Ayling, Daniel Barrell, Laura Clarke, Valery Curwen, Susan Fairley +19 more

Papers

Driven by 42 papers — median percentile 95. Top paper: “Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor”.

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

Bioinformatics(2010)10.1093/bioinformatics/btq330

N/A

21.5DataRank · unranked

1669 citations

Bethan Pritchard, Daniel Rios, Yuan Chen, Paul Flicek, Fiona Cunningham +1 more

Unknown

Genome Biology(2006)10.1186/gb-2006-7-s1-s2

N/A

16.9DataRank · unranked

340 citations

Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud +13 more

The genome of a songbird

Nature(2010)10.1038/nature08819

N/A

10.5DataRank · unranked

836 citations

David F. Clayton, Hans Ellegren, Arthur P. Arnold, LaDeana W. Hillier, Axel Künstner +77 more

The Ensembl gene annotation system

Database(2016)10.1093/database/baw093

Top 2%

8.1DataRank

Top 2%1237 citations

Sarah Ayling, Daniel Barrell, Laura Clarke, Valery Curwen, Susan Fairley +19 more

Ensembl 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa942

Top 2%

7.7DataRank

Top 2%1771 citations

Premanand Achuthan, James E. Allen, Jamie Allen, Jorge Álvarez-Jarreta, M Ridwan Amode +74 more

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel

Nature Communications(2015)10.1038/ncomms9111

Top 3%

6.7DataRank

Top 3%386 citations

Bryan Howie, Shane McCarthy, Yasin Memari, Klaudia Walter, Josine L. Min +234 more

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

Cell(2022)10.1016/j.cell.2022.08.004

Top 3%

6.3DataRank

Top 3%1056 citations

Uday S. Evani, Xuefang Zhao, Anna O. Basile, Haley Abel, Allison A. Regier +37 more

A joint NCBI and EMBL-EBI transcript set for clinical genomics and research

Nature(2022)10.1038/s41586-022-04558-8

Top 3%

6.2DataRank

Top 3%597 citations

Shashikant Pujar, Jane E. Loveland, Alex Astashyn, Ruth Bennett, Andrew Berry +35 more

Towards complete and error-free genome assemblies of all vertebrate species

Nature(2021)10.1038/s41586-021-03451-0

Top 3%

6.0DataRank

Top 3%3155 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Cell Genomics(2021)10.1016/j.xgen.2021.100029

N/A

6.0DataRank · unranked

306 citations

Angela Page, Lindsay Smith, Jeremy Adams, Gil Alterovitz, Lawrence Babb +95 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.06.430068

Top 4%

5.5DataRank

Top 4%260 citations

Uday S. Evani, Xuefang Zhao, Anna O. Basile, Haley Abel, Allison A. Regier +16 more

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

Nucleic Acids Research(2021)10.1093/nar/gkab1007

Top 4%

5.2DataRank

Top 4%452 citations

James E. Allen, Ridwan Amode, Andrey G Azov, Matthieu Barba, Andrés Becerra +60 more

GENCODE: reference annotation for the human and mouse genomes in 2023

Nucleic Acids Research(2022)10.1093/nar/gkac1071

Top 4%

5.1DataRank

Top 4%663 citations

Sílvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M. Mudge +57 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Ensembl 2023

Nucleic Acids Research(2023)10.1093/nar/gkac958

Top 4%

4.8DataRank

Top 4%1106 citations

M Ridwan Amode, Alisha Aneja, Olanrewaju Austine-Orimoloye, Andrey G Azov, If Barnes +91 more

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center

Nucleic Acids Research(2021)10.1093/nar/gkab929

Top 5%

4.8DataRank

Top 5%531 citations

Cristina Aurrecoechea, Matthieu Barba, Ana Barreto, Evelina Y. Basenko, Wojciech Bażant +61 more

Towards complete and error-free genome assemblies of all vertebrate species

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.110833

Top 5%

4.3DataRank

Top 5%195 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

The European Bioinformatics Institute (EMBL-EBI) in 2021

Nucleic Acids Research(2021)10.1093/nar/gkab1127

Top 6%

3.6DataRank

Top 6%98 citations

Alex Bateman, Cath Brooksbank, Anton I. Petrov, Rahuman S. Malik‐Sheriff, Michele Ide‐Smith +6 more

The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits

Cell Metabolism(2023)10.1016/j.cmet.2023.03.001

Top 8%

2.7DataRank

Top 8%136 citations

Marcin von Grotthuss, Jeffrey Massung, Dongkeun Jang, Lizz Caulkins, Ryan Koesterer +82 more

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

Nucleic Acids Research(2020)10.1093/nar/gkaa979

Top 8%

2.6DataRank

Top 8%133 citations

Sushma Naithani, Parul Gupta, Andrew Olson, Sharon Wei, Justin Preece +24 more

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis

Nucleic Acids Research(2020)10.1093/nar/gkaa1077

Top 10%

2.1DataRank

Top 10%34 citations

Guy Cochrane, Cath Brooksbank, Ellen M. McDonagh, Paul Flicek, Johanna McEntyre +3 more

Gene finding in the chicken genome

BMC Bioinformatics(2005)10.1186/1471-2105-6-131

Top 11%

1.9DataRank

Top 11%39 citations

Alexandre Reymond, Robert Castelo, Jacqueline M Bye, Francisco Camara, Paul Flicek +10 more

Transcriptional activity and strain-specific history of mouse pseudogenes

Nature Communications(2020)10.1038/s41467-020-17157-w

Top 19%

1.1DataRank

Top 19%38 citations

Paul Muir, Adam Frankish, Ian T. Fiddes, Mark Diekhans, David Thybert +7 more

A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447896

N/A

0.759DataRank · unranked

22 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Jose Manuel Gonzalez, Michele Magrane +23 more

Analysis of genome-wide knockout mouse database identifies candidate ciliopathy genes

Scientific Reports(2022)10.1038/s41598-022-19710-7

Top 36%

0.540DataRank

Top 36%11 citations

Bret A. Moore, Zorana Berberovic, Hibret A. Adissu, Mohammad Eskandarian, Ann M. Flenniken +40 more

Transcriptomics and chromatin accessibility in multiple African population samples

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.564839

Top 38%

0.505DataRank

Top 38%13 citations

Pagé C. Goddard, Emre Karakoç, Soumya Kundu, Stephanie M. Yan, Daniel Nachun +27 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Author Correction: Comparative and demographic analysis of orang-utan genomes

Nature(2022)10.1038/s41586-022-04799-7

Top 67%

0.174DataRank

Top 67%2 citations

LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny +95 more

The Evolutionary Fates of a Large Segmental Duplication in Mouse

UNC Libraries(2020)10.17615/5y4y-d583

N/A

0DataRank · unranked

0 citations

Rachel McMullan, Matthew Holt, Andrew P. Morgan, Timothy A. Bell, Paul Flicek +7 more

THE VALUE OF PRIMARY TRANSCRIPTS TO THE CLINICAL AND NON-CLINICAL GENOMICS COMMUNITY: SURVEY RESULTS AND ROADMAP FOR IMPROVEMENTS. AUTHORS

(2021)10.22541/au.161901710.08079318/v1

N/A

0DataRank · unranked

0 citations

Joannella Morales, Aoife McMahon, Jane E Loveland, Emily Perry, Adam Frankish +4 more

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

UNC Libraries(2020)10.17615/d7n3-p041

Top 100%

0DataRank

Top 100%0 citations

Christopher M. Taylor, Saurabh Asthana, J Stamatoyannopoulos, Michael P. Snyder, Ewan Birney +26 more

Functional signatures of evolutionarily young CTCF binding sites

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.31.928119

N/A

0DataRank · unranked

1 citations

Jonathan M. Mudge, Duncan T. Odom, Paul Flicek, Dhoyazan Azazi

Standards recommendations for the Earth BioGenome Project

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115639118

N/A

0DataRank · unranked

109 citations

Richard Durbin, Paul Flicek, Kerstin Lindblad‐Toh, Xiaofeng Wei, John M. Archibald +40 more

Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density

PLoS Genetics(2020)10.1371/journal.pgen.1009190

N/A

0DataRank · unranked

30 citations

Christine Schütt, Jan Rozman, Maria del Mar Muñiz Moreno, Stefan Brandmaier, Michelle Simon +59 more

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.519083

N/A

0DataRank · unranked

5 citations

Jasper Anckaert, Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu +31 more

The Deep Genome Project

Genome biology(2020)10.1186/s13059-020-1931-9

N/A

0DataRank · unranked

44 citations

David J. Adams, Gareth Baynam, Arthur L. Beaudet, Fátima Bosch, Kym M. Boycott +39 more

Cell type-specific novel long non-coding RNA and circular RNA in the BLUEPRINT hematopoietic transcriptomes atlas

Haematologica(2020)10.3324/haematol.2019.238147

N/A

0DataRank · unranked

22 citations

Osagie Izuogu, Natasha Andressa Nogueira Jorge, Denis Seyres, Mariona Bustamante, Frances Burden +22 more

Functional signatures of evolutionarily young CTCF binding sites

BMC Biology(2020)10.1186/s12915-020-00863-8

N/A

0DataRank · unranked

13 citations

Jonathan M. Mudge, Duncan T. Odom, Paul Flicek, Dhoyazan Azazi

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Nature Methods(2023)10.1038/s41592-023-01944-6

N/A

0DataRank · unranked

106 citations

Jasper Anckaert, Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu +31 more

The tuatara genome reveals ancient features of amniote evolution

Nature(2020)10.1038/s41586-020-2561-9

N/A

0DataRank · unranked

208 citations

Kim Rutherford, Stefan Prost, Marc Tollis, David J. Winter, Jonathan R. Macey +60 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

Paul Flicek

Indexed papers

Top data-sharing exemplar

Papers