Shilin Zhao

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07288

Top 100%

0DataRank

Top 100%0 citations

Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong +42 more

Papers

Driven by 59 papers — median percentile 0. Top paper: “Protective Role of Spermidine in Colitis and Colon Carcinogenesis”.

Protective Role of Spermidine in Colitis and Colon Carcinogenesis

Gastroenterology(2021)10.1053/j.gastro.2021.11.005

N/A

3.5DataRank · unranked

161 citations

Yvonne L. Latour, Mohammad Asim, Daniel P. Barry, Margaret M. Allaman, Jordan L. Finley +13 more

Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants

Science Translational Medicine(2017)10.1126/scitranslmed.aai8708

N/A

0.740DataRank · unranked

138 citations

Lisa Bastarache, Christian M. Shaffer, Silvana Gaudieri, Yaomin Xu, Andrew M. Glazer +12 more

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging

Electronic Imaging(2025)10.2352/ei.2025.37.14.coimg-132

N/A

0.581DataRank · unranked

47 citations

Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao +11 more

Prolonged Benefit from Ipilimumab Correlates with Improved Outcomes from Subsequent Pembrolizumab

Cancer Immunology Research(2016)10.1158/2326-6066.cir-15-0281

N/A

0.464DataRank · unranked

21 citations

Richard Joseph, Chengwei Peng, Fei Ye, Shilin Zhao, Igor Puzanov +3 more

A prognostic molecular signature of hepatic steatosis is spatially heterogeneous and dynamic in human liver

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101871

N/A

0.406DataRank · unranked

14 citations

Niran Hadad, Emeli Chatterjee, Maria Jiménez Ramos, Eric Farber‐Eger, Rashedeh Roshani +38 more

PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation

PubMed(2024)10.1109/cvpr52733.2024.01115

N/A

0.385DataRank · unranked

12 citations

Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong +9 more

Genetic analysis in African ancestry populations reveals genetic contributors to lung cancer susceptibility

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.07.009

N/A

0.208DataRank · unranked

3 citations

James Jaworski, Shilin Zhao, Jinmeng Rao, Bríd M. Ryan, Ann G. Schwartz +9 more

stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration

Briefings in Bioinformatics(2025)10.1093/bib/bbaf429

N/A

0.165DataRank · unranked

2 citations

Haichun Yang, Ruining Deng, Yuankai Huo, Qi Liu, Yu Shyr +2 more

Beta 2 adrenergic receptor gene methylation activates innate lymphoid cells to drive hypertension in lymphocyte deficient hosts

Cardiovascular Research(2025)10.1093/cvr/cvaf042

N/A

0.165DataRank · unranked

2 citations

Sara Perrotta, Liang Xiao, Lorenzo Carnevale, Marwa A. Abdel-Dayem, Elizabeth M. Hennen +15 more

The reverse transsulfuration pathway affects the colonic microbiota and contributes to colitis in mice

Amino Acids(2024)10.1007/s00726-024-03423-4

N/A

0.165DataRank · unranked

2 citations

Yvonne L. Latour, Kara M. McNamara, Caroline V. Hawkins, Kamery J. Williams, Mohammad Asim +10 more

A prognostic molecular signature of hepatic steatosis is spatially heterogeneous and dynamic in human liver

UNC Libraries(2024)10.17615/rgww-7041

N/A

0.104DataRank · unranked

1 citations

Kendall Van Keuren‐Jensen, Susan P. Fisher‐Hoch, Nataraja Sarma Vaitinadin, Kaushik Amancherla, Andrew Perry +38 more

Hypusination Maintains Intestinal Homeostasis and Prevents Colitis and Carcinogenesis by Enhancing Aldehyde Detoxification

Gastroenterology(2023)10.1053/j.gastro.2023.05.041

N/A

0DataRank · unranked

29 citations

Thaddeus M. Smith, Yvonne L. Latour, Mohammad Asim, Daniel P. Barry, Margaret M. Allaman +16 more

Omicron BA.1-specific T-cell responses in adults vaccinated with CoronaVac or BNT162b2 in Hong Kong: an observational cohort study

The Lancet Microbe(2023)10.1016/s2666-5247(23)00006-x

N/A

0DataRank · unranked

29 citations

Chunke Chen, Shilin Zhao, Yuanxin Sun, Karen Yiu, Tat‐On Chan +10 more

Proteomic architecture of frailty across the spectrum of cardiovascular disease

Aging Cell(2023)10.1111/acel.13978

N/A

0DataRank · unranked

10 citations

Shilin Zhao, Priya Gajjar, Venkatesh L. Murthy, Benoit Lehallier, Patricia E. Miller +19 more

Metabolic Signatures of Cardiac Dysfunction, Multimorbidity, and Post–Transcatheter Aortic Valve Implantation Death

Journal of the American Heart Association(2023)10.1161/jaha.123.029542

N/A

0DataRank · unranked

8 citations

Shilin Zhao, Venkatesh L. Murthy, Deepak K. Gupta, William F. Fearon, Juyong Brian Kim +21 more

Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness

Cancer Research Communications(2023)10.1158/2767-9764.crc-22-0373

N/A

0DataRank · unranked

8 citations

Yong Zou, Khushbu Patel, Shilin Zhao, Alexis Coullomb, Dianna J. Rowe +7 more

Electrophilic reactive aldehydes as a therapeutic target in colorectal cancer prevention and treatment

Oncogene(2023)10.1038/s41388-023-02691-w

N/A

0DataRank · unranked

9 citations

Mohammad Asim, Thaddeus M. Smith, Kamery J. Williams, Daniel P. Barry, Margaret M. Allaman +10 more

Family Typology for Adults With Type 2 Diabetes: Longitudinal Stability and Validity for Diabetes Management and Well-being

Diabetes Care(2023)10.2337/dc23-0827

N/A

0DataRank · unranked

3 citations

Shilin Zhao, McKenzie K. Roddy, Andrew J. Spieker, Cynthia A. Berg, Lyndsay A. Nelson +2 more

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging

arXiv (Cornell University)(2023)10.48550/arxiv.2304.04155

N/A

0DataRank · unranked

97 citations

Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao +11 more

The dicarbonyl electrophile scavenger 2-hydroxybenzylamine (2-HOBA) prevents colorectal carcinogenesis and reduces tumor growth

(2023)10.22541/au.167515663.34499902/v1

N/A

0DataRank · unranked

1 citations

Mohammad Asim, Thaddeus M. Smith, Kamery J. Williams, Daniel P. Barry, Margaret M. Allaman +10 more

Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers

arXiv (Cornell University)(2023)10.48550/arxiv.2309.02563

N/A

0DataRank · unranked

1 citations

Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang +4 more

Proteomic analysis of cardiorespiratory fitness for prediction of mortality and multisystem disease risks

Nature Medicine(2024)10.1038/s41591-024-03039-x

N/A

0DataRank · unranked

38 citations

Eric Farber‐Eger, Tomas I. Gonzales, Toshiko Tanaka, Jeremy Robbins, Venkatesh L. Murthy +33 more

Metabolic liability for weight gain in early adulthood

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101548

N/A

0DataRank · unranked

12 citations

Jonathan D. Mosley, Andrew Perry, DAVID R. JACOBS, Kahraman Tanrıverdi, Shilin Zhao +10 more

Differences in Cardiometabolic Proteins in Pregnancy Prioritize Relevant Targets of Preeclampsia

Arteriosclerosis Thrombosis and Vascular Biology(2024)10.1161/atvbaha.124.320737

N/A

0DataRank · unranked

5 citations

Andrew Perry, Marni Jacobs, Lauren E. Petty, Kaushik Amancherla, Shilin Zhao +10 more

Hypusination in intestinal epithelial cells protects mice from infectious colitis

Gut Microbes(2024)10.1080/19490976.2024.2438828

N/A

0DataRank · unranked

5 citations

Caroline V. Hawkins, Kamery J. Williams, Lydia A. Snyder, Daniel P. Barry, Mohammad Asim +9 more

Analysis of the effect of hypusination in myeloid cells on colitis and colitis-associated cancer

Heliyon(2024)10.1016/j.heliyon.2024.e33838

N/A

0DataRank · unranked

4 citations

Jordan L. Finley, Mohammad Asim, Daniel P. Barry, Margaret M. Allaman, Caroline V. Hawkins +9 more

Elucidating the role of EPPK1 in lung adenocarcinoma development

BMC Cancer(2024)10.1186/s12885-024-12185-x

N/A

0DataRank · unranked

4 citations

Michael N. Kammer, Saifur Rahman, Sheau‐Chiann Chen, Shilin Zhao, Heidi Chen +9 more

Chronic hyperglycemia aggravates lung function in a Scnn1b-Tg murine model

American Journal of Physiology-Lung Cellular and Molecular Physiology(2024)10.1152/ajplung.00279.2023

N/A

0DataRank · unranked

4 citations

Dina A. Moustafa, Shilin Zhao, Analia Vazquezs Cegla, James T. Lyles, Joanna B. Goldberg +3 more

Targeted Proteomics Reveals Functional Targets for Early Diabetes Susceptibility in Young Adults

Circulation Genomic and Precision Medicine(2024)10.1161/circgen.123.004192

N/A

0DataRank · unranked

3 citations

Jiawei Zhong, Lucas Massier, Kahraman Tanrıverdi, Shih‐Jen Hwang, Jeffrey Haessler +13 more

HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis

Lecture notes in computer science(2024)10.1007/978-3-031-72083-3_15

N/A

0DataRank · unranked

5 citations

Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao +8 more

Spatial pathomics toolkit for quantitative analysis of podocyte nuclei with histology and spatial transcriptomics data in renal pathology

PubMed(2024)10.1117/12.3006318

N/A

0DataRank · unranked

1 citations

Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao +7 more

Sodium activates human monocytes via the NADPH oxidase and isolevuglandin formation

Cardiovascular Research(2020)10.1093/cvr/cvaa207

N/A

0DataRank · unranked

80 citations

Justin Van Beusecum, Liang Xiao, Luciana do Carmo, Ashley Pitzer, Roxana Loperena +17 more

Unbiased characterization of atrial fibrillation phenotypic architecture provides insight to genetic liability and clinically relevant outcomes

medRxiv(2024)10.1101/2024.02.13.24302788

N/A

0DataRank · unranked

0 citations

Shilin Zhao, Yajing Li, Eric Farber‐Eger, Brandon D. Lowery, Lauren Lee Shaffer +6 more

Evaluation kidney layer segmentation on whole slide imaging using convolutional neural networks and transformers

PubMed(2024)10.1117/12.3006865

N/A

0DataRank · unranked

0 citations

Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang +4 more

Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology

arXiv (Cornell University)(2024)10.48550/arxiv.2408.09278

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang, Yaohong Wang +4 more

Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology

arXiv (Cornell University)(2024)10.48550/arxiv.2411.16961

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Glo-In-One-v2: holistic identification of glomerular cells, tissues, and lesions in human and mouse histopathology

Journal of Medical Imaging(2025)10.1117/1.jmi.12.6.061406

N/A

0DataRank · unranked

5 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Evaluating cell AI foundation models in kidney pathology with human-in-the-loop enrichment

Communications Medicine(2025)10.1038/s43856-025-01205-x

N/A

0DataRank · unranked

4 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao +13 more

Human Physiologic Responses to Insulin in Indigenous Americans Identify a Metabolic Susceptibility Profile Linked to Diabetes

Diabetes Care(2025)10.2337/dc25-0151

N/A

0DataRank · unranked

2 citations

Paolo Piaggi, Phillip Lin, Shilin Zhao, Lindsey K. Stolze, Andrew Perry +10 more

Aconitate Decarboxylase 1 Downregulates Colitis and Maintains Homeostasis of the Gut Metabolome and Microbiome

Gastro Hep Advances(2025)10.1016/j.gastha.2025.100748

N/A

0DataRank · unranked

1 citations

Yvonne L. Latour, Caroline V. Hawkins, Kamery J. Williams, Daniel P. Barry, Margaret M. Allaman +10 more

Assessment of cell nuclei AI foundation models in kidney pathology

PubMed(2025)10.1117/12.3047301

N/A

0DataRank · unranked

3 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao +12 more

PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit

arXiv (Cornell University)(2025)10.48550/arxiv.2501.06151

N/A

0DataRank · unranked

0 citations

Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao +3 more

PySpatial: A high-speed whole slide image pathomics toolkit

Electronic Imaging(2025)10.2352/ei.2025.37.12.hpci-177

N/A

0DataRank · unranked

0 citations

Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao +3 more

KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07288

Top 100%

0DataRank

Top 100%0 citations

Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong +42 more

GLAM: glomeruli segmentation for human pathological lesions using adapted mouse model

PubMed(2025)10.1117/12.3046823

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Computer Vision Methods for Spatial Transcriptomics: A Survey

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682148

N/A

0DataRank · unranked

0 citations

Ruining Deng, Junlin Guo, Tianyuan Yao, Siqi Lu, Chongyu Qu +12 more

Distinct and convergent effects of SF3B1 mutations in human breast cancer

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2505374122

N/A

0DataRank · unranked

0 citations

Christin I. Keeton, Irika R. Sinha, Jonathan P. Ling, Yu Wang, Lauren Ha +17 more

Img2ST-Net: Efficient High-Resolution Spatial Omics Prediction from Whole Slide Histology Images via Fully Convolutional Image-to-Image Learning

arXiv (Cornell University)(2025)10.48550/arxiv.2508.14393

N/A

0DataRank · unranked

0 citations

Ruining Deng, Junlin Guo, Tianyuan Yao, Juming Xiong, Chongyu Qu +8 more

GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model

arXiv (Cornell University)(2024)10.48550/arxiv.2407.18390

N/A

0DataRank · unranked

1 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Dicarbonyl Electrophiles Mediate Inflammation-Induced Gastrointestinal Carcinogenesis

Gastroenterology(2020)10.1053/j.gastro.2020.11.006

N/A

0DataRank · unranked

34 citations

Olivier Boutaud, Mohammad Asim, Irène Zagol-Ikapitte, Alberto G. Delgado, Yvonne L. Latour +16 more

Salivary epigenetic biomarkers as predictors of emerging childhood obesity

BMC Medical Genetics(2020)10.1186/s12881-020-0968-7

N/A

0DataRank · unranked

31 citations

Evan C. Sommer, Shilin Zhao, Eli K. Po’e, Shari L. Barkin, Amanda Rushing

Growth Arrest Specific-6 and Axl Coordinate Inflammation and Hypertension

Circulation Research(2021)10.1161/circresaha.121.319643

N/A

0DataRank · unranked

43 citations

Natália R. Barbaro, C. Duncan Smart, David M. Patrick, Roxana Loperena, Shilin Zhao +6 more

LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8

Research Square(2021)10.21203/rs.3.rs-134271/v1

N/A

0DataRank · unranked

1 citations

Danielle L. Michell, Ashley Cavnar, Wanying Zhu, Neil Makhijani, Danielle Contreras +13 more

LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8

Nature Cell Biology(2022)10.1038/s41556-022-01030-7

N/A

0DataRank · unranked

35 citations

Danielle L. Michell, Ashley Cavnar, Wanying Zhu, Neil Makhijani, Danielle Contreras +13 more

Isolevuglandins disrupt PU.1-mediated C1q expression and promote autoimmunity and hypertension in systemic lupus erythematosus

JCI Insight(2022)10.1172/jci.insight.136678

N/A

0DataRank · unranked

31 citations

Néstor de la Visitación, Jaya Krishnan, Wei Chen, Michelle J. Ormseth, Christoph Stein +15 more

The inflammatory proteome, obesity, and medical weight loss and regain in humans

Obesity(2022)10.1002/oby.23587

N/A

0DataRank · unranked

15 citations

Kahraman Tanrıverdi, Antonina Risitano, Shih‐Jen Hwang, Venkatesh L. Murthy, Matthew Nayor +5 more

Patient-specific comorbidities as prognostic variables for survival in myelofibrosis

Blood Advances(2022)10.1182/bloodadvances.2021006318

N/A

0DataRank · unranked

10 citations

Cosmin A. Bejan, Shilin Zhao, Ameet Patel, Ashwin Kishtagari, Travis Spaulding +14 more

Increasing utilization of the TWIST score in workup of patients with acute scrotal pain: Role in diagnosis and risk stratification

Journal of Pediatric Urology(2022)10.1016/j.jpurol.2022.09.018

N/A

0DataRank · unranked

4 citations

Kyle Graham, Heidi Chen, Shilin Zhao, Catherine Burger, Donald H. Arnold +8 more

Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation

IEEE Transactions on Biomedical Engineering(2023)10.1109/tbme.2023.3260739

N/A

0DataRank · unranked

38 citations

Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad +7 more

Shilin Zhao

Indexed papers

Top data-sharing exemplar

Papers