Rafael A. Irizarry

Also affiliated with Dana-Farber/Harvard Cancer Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

22.7Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

Biostatistics(2003)10.1093/biostatistics/4.2.249

Top 1%

15.9DataRank

Top 1%10782 citations

Rafael A. Irizarry

Papers

Driven by 31 papers — median percentile 99. Top paper: “Exploration, normalization, and summaries of high density oligonucleotide array probe level data”.

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

Biostatistics(2003)10.1093/biostatistics/4.2.249

Top 1%

15.9DataRank

Top 1%10782 citations

Rafael A. Irizarry

Progressive immune dysfunction with advancing disease stage in renal cell carcinoma

Cancer Cell(2021)10.1016/j.ccell.2021.02.013

N/A

9.5DataRank · unranked

526 citations

Kelly Street, Kelly P. Burke, David L. Cookmeyer, Thomas Denize, Christina B. Pedersen +30 more

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Nature Communications(2017)10.1038/s41467-017-01973-8

Top 3%

6.9DataRank

Top 3%1042 citations

Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm, Claire Duvallet

Bioconductor: open software development for computational biology and bioinformatics

Genome Biology(2004)10.1186/gb-2004-5-10-r80

N/A

1.4DataRank · unranked

12497 citations

Vincent J. Carey, Douglas M. Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit +24 more

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

Bioinformatics(2003)10.1093/bioinformatics/19.2.185

N/A

1.4DataRank · unranked

8412 citations

M. Åstrand, Heidi S. Feiler, Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand +2 more

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Development(2019)10.1242/dev.175265

N/A

1.0DataRank · unranked

33 citations

Philipp Wahle, Sascha Werner, Irwin Jungreis, Peter Menzel, Chinmay J. Shukla +7 more

Baseline immune state and T-cell clonal kinetics are associated with durable response to CAR-T therapy in large B-cell lymphoma

Blood(2024)10.1182/blood.2024024381

N/A

0.840DataRank · unranked

19 citations

Isabella N. Grabski, Roch Houot, Satyen H. Gohil, Shogo Miura, Robert Redd +19 more

Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity

Cell(2021)10.1016/j.cell.2021.11.018

N/A

0.826DataRank · unranked

246 citations

Linglin Huang, Meromit Singer, Anvita Singaraju, Rocky M. Barilla, Brianna M.L. Regan +11 more

Detection of allele-specific expression in spatial transcriptomics with spASE

Genome biology(2024)10.1186/s13059-024-03317-4

N/A

0.522DataRank · unranked

12 citations

Dylan Cable, Irving Barrera, Tongtong Zhao, Evan Murray, Martin J. Aryee +3 more

Proceedings of the second international molecular pathological epidemiology (MPE) meeting

UNC Libraries(2020)10.17615/xg2v-t885

N/A

0.165DataRank · unranked

2 citations

Kathryn C. Fitzgerald, Elizabeth M. Poole, Colin B. Begg, Mark E. Sherman, Piet A. van den Brandt +21 more

A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data

Biostatistics(2022)10.1093/biostatistics/kxac021

N/A

0DataRank · unranked

18 citations

Rafael A. Irizarry, Isabella N. Grabski

Differential richness inference for 16S rRNA marker gene surveys

Genome biology(2022)10.1186/s13059-022-02722-x

N/A

0DataRank · unranked

10 citations

Eric Slud, Christine Hehnly, Lijun Zhang, James R. Broach, Rafael A. Irizarry +3 more

All-cause excess mortality across 90 municipalities in Gujarat, India, during the COVID-19 pandemic (March 2020-April 2021)

PLOS Global Public Health(2022)10.1371/journal.pgph.0000824

N/A

0DataRank · unranked

9 citations

Biraj Patnaik, Caroline O. Buckee, Mathew V. Kiang, Rafael A. Irizarry, Satchit Balsari +2 more

Reassessing pharmacogenomic cell sensitivity with multilevel statistical models

Biostatistics(2022)10.1093/biostatistics/kxac010

N/A

0DataRank · unranked

0 citations

Rafael A. Irizarry, Matt Ploenzke

Significance analysis for clustering with single-cell RNA-sequencing data

Nature Methods(2023)10.1038/s41592-023-01933-9

N/A

0DataRank · unranked

104 citations

Kelly Street, Rafael A. Irizarry, Isabella N. Grabski

UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability

Molecular Cell(2023)10.1016/j.molcel.2023.06.028

N/A

0DataRank · unranked

73 citations

Jacob D. Aguirre, Yen-Der Li, Jared Brown, Vivian Focht, Lukas Kater +30 more

Effects of KRAS Genetic Interactions on Outcomes in Cancers of the Lung, Pancreas, and Colorectum

Cancer Epidemiology Biomarkers & Prevention(2023)10.1158/1055-9965.epi-23-0262

N/A

0DataRank · unranked

6 citations

John V. Heymach, Kenneth L. Kehl, Scott Kopetz, Ken S. Lau, Gregory J. Riely +5 more

Robust identification of perturbed cell types in single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.06.539326

N/A

0DataRank · unranked

4 citations

Danielle Paulson, Gege Qian, X. Shirley Liu, Rafael A. Irizarry, Avinash Sahu +1 more

DNA binding analysis of rare variants in homeodomains reveals novel homeodomain specificity-determining residues

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545320

N/A

0DataRank · unranked

2 citations

Patrick K. Kimes, Stephen S. Gisselbrecht, Sachi Inukai, Sabrina K. Phanor, James T. Anderson +10 more

DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues

Nature Communications(2024)10.1038/s41467-024-47396-0

N/A

0DataRank · unranked

25 citations

Patrick K. Kimes, Stephen S. Gisselbrecht, Sachi Inukai, Sabrina K. Phanor, James T. Anderson +10 more

Robust identification of perturbed cell types in single-cell RNA-seq data

Nature Communications(2024)10.1038/s41467-024-51649-3

N/A

0DataRank · unranked

22 citations

Danielle Paulson, Gege Qian, X. Shirley Liu, Rafael A. Irizarry, Avinash Sahu +1 more

An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.21.665958

N/A

0DataRank · unranked

0 citations

Paolo Cadinu, Phillip Nicol, U. Herrmann, Tyrone Lee, Ludwig Geistlinger +3 more

Contributors

Genomic and Personalized Medicine(2009)10.1016/b978-0-12-369420-1.00122-0

N/A

0DataRank · unranked

0 citations

Matthew L. Anderson, Felicita Andreotti, Brian H. Annex, Anthony Antonellis, Dmitri Artemov +272 more

Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2001671117

N/A

0DataRank · unranked

67 citations

Nishant Kishore, Rafael A. Irizarry, Caroline O. Buckee, Rolando J. Acosta

Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

Genome biology(2020)10.1186/s13059-020-02078-0

N/A

0DataRank · unranked

37 citations

Rafael A. Irizarry, F. William Townes

Vaginal Microbiome Topic Modelling of Laboring Ugandan Women With and Without Fever

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.401703

N/A

0DataRank · unranked

0 citations

Lisa M. Bebell, Kathy Burgoine, Christine Hehnly, Lijun Zhang, Kim Moran +19 more

Robust decomposition of cell type mixtures in spatial transcriptomics

Nature Biotechnology(2021)10.1038/s41587-021-00830-w

N/A

0DataRank · unranked

1461 citations

Evan Murray, Luli S. Zou, Aleksandrina Goeva, Evan Z. Macosko, Fei Chen +2 more

Capturing discrete latent structures: choose LDs over PCs

Biostatistics(2021)10.1093/biostatistics/kxab030

N/A

0DataRank · unranked

7 citations

Rafael A. Irizarry, Héctor Corrada Bravo, T. Alexander

Differential richness inference for 16S rRNA marker gene surveys

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.07.467583

N/A

0DataRank · unranked

1 citations

Eric Slud, Christine Hehnly, Lijun Zhang, James R. Broach, Rafael A. Irizarry +3 more

Cell type-specific inference of differential expression in spatial transcriptomics

Nature Methods(2022)10.1038/s41592-022-01575-3

N/A

0DataRank · unranked

177 citations

Evan Murray, Vignesh Shanmugam, Simon Zhang, Luli S. Zou, Michael Diao +5 more

mirTarRnaSeq: An R/Bioconductor Statistical Package for miRNA-mRNA Target Identification and Interaction Analysis

BMC Genomics(2022)10.1186/s12864-022-08558-w

N/A

0DataRank · unranked

14 citations

Sarah U. Morton, Christine Hehnly, Jasmine Smith, Trang T. Doan, Rafael A. Irizarry +5 more

Rafael A. Irizarry

Indexed papers

Top data-sharing exemplar

Papers