🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Rebecca N. Culver

Stanford University

ORCID: 0000-0002-3963-193X
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.4Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Science(2022)10.1126/science.abl4896
Top 4%
5.3DataRank
Top 4%1018 citations

Robert C. Jones, Jim Karkanias, Naftali Kaminski, Angela Oliveira Pisco, Stephen R. Quake +181 more

Papers

Driven by 16 papers — median percentile 71. Top paper: “Profiling the human intestinal environment under physiological conditions”.

Profiling the human intestinal environment under physiological conditions

Nature(2023)10.1038/s41586-023-05989-7
N/A
6.9DataRank · unranked
463 citations

Rebecca N. Culver, Jessica A. Grembi, Jacob Folz, Peter V. Treit, Handuo Shi +16 more

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Science(2022)10.1126/science.abl4896
Top 4%
5.3DataRank
Top 4%1018 citations

Robert C. Jones, Jim Karkanias, Naftali Kaminski, Angela Oliveira Pisco, Stephen R. Quake +181 more

Human metabolome variation along the upper intestinal tract

Nature Metabolism(2023)10.1038/s42255-023-00777-z
N/A
3.5DataRank · unranked
138 citations

Rebecca N. Culver, Juan Montes Morales, Jessica A. Grembi, George Triadafilopoulos, David A. Relman +4 more

Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron

BMC Biology(2022)10.1186/s12915-022-01481-2
Top 29%
0.701DataRank
Top 29%29 citations

Jiawei Sun, Hualan Liu, Taylor H. Nguyen, Rebecca N. Culver, Arianna I. Celis +11 more

Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.19.476920
N/A
0.545DataRank · unranked
9 citations

Rebecca N. Culver, Jessica A. Grembi, Jacob Folz, Peter V. Treit, Les Dethlefsen +13 more

Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions

Cell(2025)10.1016/j.cell.2025.02.010
N/A
0.470DataRank · unranked
22 citations

Jiawei Sun, Rebecca N. Culver, Arvie Violette, Char Wynter, Marta Nieckarz +24 more

An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome

Nature Communications(2024)10.1038/s41467-024-46070-9
Top 44%
0.426DataRank
Top 44%11 citations

Camille Ezran, Michael F. Z. Wang, Zhengda Li, Kyle Awayan, Snigdha Agarwal +95 more

Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.27.474270
N/A
0.104DataRank · unranked
1 citations

Jiawei Sun, Hualan Liu, Taylor H. Nguyen, Rebecca N. Culver, Arianna I. Celis +11 more

Spatial, temporal, and inter-subject variation of the metabolome along the human upper intestinal tract

Research Square(2022)10.21203/rs.3.rs-2099937/v1
N/A
0.104DataRank · unranked
1 citations

Rebecca N. Culver, Juan Morales, Jessica A. Grembi, George Triadafilopoulos, David A. Relman +4 more

Optimization of the 16S rRNA sequencing analysis pipeline for studying in vitro communities of gut commensals

iScience(2022)10.1016/j.isci.2022.103907
N/A
0DataRank · unranked
20 citations

Andrés Aranda-Díaz, Rebecca N. Culver, Katherine S. Xue, David A. Relman, Handuo Shi +2 more

A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.29.555234
N/A
0DataRank · unranked
15 citations

Jiawei Sun, Rebecca N. Culver, Arvie Violette, Charles Wynter, Marta Nieckarz +23 more

Improved mouse models of the small intestine microbiota using region-specific sampling from humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.24.590999
N/A
0DataRank · unranked
2 citations

Sean P. Spencer, Arvie Violette, Evelyn Giselle Lemus Silva, Tadashi Takeuchi, Ceena D. Nafarzadegan +5 more

M-TUBE enables large-volume bacterial gene delivery using a high-throughput microfluidic electroporation platform

PLoS Biology(2022)10.1371/journal.pbio.3001727
N/A
0DataRank · unranked
19 citations

Sijie Chen, Anthony L. Shiver, Rebecca N. Culver, Kerwyn Casey Huang, Cullen Buie +1 more

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Genome Medicine(2020)10.1186/s13073-020-00747-0
N/A
0DataRank · unranked
67 citations

Alex Bishara, Eli L. Moss, Tkachenko Ei, Joyce B. Kang, Rebecca N. Culver +8 more

Fermented foods restructure gut microbiota and promote immune regulation via microbial metabolites

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.11.490523
N/A
0DataRank · unranked
8 citations

Evelyn Giselle Lemus Silva, Elisa Benedetti Caffery, Matthew Merrill Carter, Rebecca N. Culver, Min Wang +5 more

M-TUBE: a fabrication-free microfluidic device for large-volume bacterial electroporation requiring minimal assembly

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.14.476275
N/A
0DataRank · unranked
0 citations

Sijie Chen, Anthony L. Shiver, Rebecca N. Culver, Kerwyn Casey Huang, Cullen Buie +1 more