🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Thomas F. Martinez

University of California, Irvine

ORCID: 0000-0002-4011-8164

Also affiliated with Universidad Nacional del Litoral, Instituto de Física del Litoral, Instituto de Ciencias Veterinarias

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.5Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Standardized annotation of translated open reading frames

Nature Biotechnology(2022)10.1038/s41587-022-01369-0
Top 7%
3.2DataRank
Top 7%252 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis +31 more

Papers

Driven by 13 papers — median percentile 70. Top paper: “Standardized annotation of translated open reading frames”.

Standardized annotation of translated open reading frames

Nature Biotechnology(2022)10.1038/s41587-022-01369-0
Top 7%
3.2DataRank
Top 7%252 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis +31 more

A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447896
N/A
0.759DataRank · unranked
22 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Jose Manuel Gonzalez, Michele Magrane +23 more

Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins

Cell Metabolism(2023)10.1016/j.cmet.2022.12.004
N/A
0.657DataRank · unranked
79 citations

Sally Lyons‐Abbott, Angie L. Bookout, Eduardo Vieira de Souza, Cynthia J. Donaldson, Joan Vaughan +26 more

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.09.612016
N/A
0.542DataRank · unranked
36 citations

Leron W. Kok, Jonathan M. Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun +38 more

Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq

Briefings in Bioinformatics(2024)10.1093/bib/bbae268
N/A
0.442DataRank · unranked
18 citations

Nasun Hah, Thomas F. Martinez, Gregory Tong

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3
N/A
0.389DataRank · unranked
11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

An expanded reference catalog of translated open reading frames for biomedical research

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.03.662928
Top 53%
0.319DataRank
Top 53%7 citations

Jorge Ruiz-Orera, Jack A. S. Tierney, Jim Clauwaert, Eric W. Deutsch, M. Mar Albà +41 more

The TINCR ubiquitin-like microprotein is a tumor suppressor in squamous cell carcinoma

Nature Communications(2023)10.1038/s41467-023-36713-8
N/A
0DataRank · unranked
34 citations

Jessie Brown, Thomas F. Martinez, Juana García-Pedrero, F. Forouhar, S. Aidan Quinn +16 more

Integrated workflow for discovery of microprotein-coding small open reading frames

STAR Protocols(2023)10.1016/j.xpro.2023.102649
N/A
0DataRank · unranked
9 citations

Yasamin Hajy Heydary, Gregory Tong, Thomas F. Martinez, Kevin Cao

Profiling Mouse Brown and White Adipocytes to Identify Metabolically Relevant Small ORFs and Functional Microproteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.12.484025
N/A
0DataRank · unranked
2 citations

Sally Lyons‐Abbott, Angie L. Bookout, Cynthia J. Donaldson, Joan Vaughan, Calvin J. Lau +24 more

A short ORF-encoded transcriptional regulator

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2021943118
N/A
0DataRank · unranked
60 citations

Insha Ahmad, Yeonjin Ko, Yuxiang Zhang, Thomas F. Martinez, Jolene K. Diedrich +7 more

A large-scale sORF screen identifies putative microproteins involved in cancer cell fitness

iScience(2025)10.1016/j.isci.2025.111884
N/A
0DataRank · unranked
13 citations

Christopher Dirks, Carmen Navarro, Lorenzo Lafranchi, Anna Spinner, Glancis L. Raja Arul +5 more

Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.30.573709
N/A
0DataRank · unranked
2 citations

Nasun Hah, Thomas F. Martinez, Gregory Tong