David Gresham

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 26 papers. Top paper: “Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments”.

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments

eLife(2020)10.7554/elife.51254

N/A

0.754DataRank · unranked

151 citations

Dayanne M Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham, Christopher A. Jackson

Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states

Molecular Systems Biology(2020)10.15252/msb.20199167

N/A

0.500DataRank · unranked

27 citations

Anastasia Baryshnikova, Nathan Brandt, David Gresham, Siyu Sun

Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution

Journal of Molecular Evolution(2023)10.1007/s00239-023-10102-7

N/A

0.442DataRank · unranked

18 citations

Titir De, Julie N. Chuong, David Gresham, Pieter Spealman

Host obesity impacts genetic variation in influenza A viral populations

Journal of Virology(2024)10.1128/jvi.01778-23

N/A

0.350DataRank · unranked

6 citations

Rebekah Honce, Victoria Meliopoulos, Ernesto Segredo-Otero, Katherine Johnson, Stacey Schultz‐Cherry +3 more

Host obesity impacts genetic variation in influenza A viral populations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548715

N/A

0.165DataRank · unranked

2 citations

Rebekah Honce, Victoria Meliopoulos, Stacey Schultz‐Cherry, Elodie Ghedin, David Gresham +1 more

Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics

PLoS Biology(2022)10.1371/journal.pbio.3001633

N/A

0DataRank · unranked

36 citations

Julie N. Chuong, Fangfei Li, Gavin Sherlock, David Gresham, Yoav Ram +1 more

Complex Genomic Rearrangements following Selection in a Glutamine-Limited Medium over Hundreds of Generations

Microbiology Resource Announcements(2022)10.1128/mra.00729-22

N/A

0DataRank · unranked

15 citations

Grace Avecilla, Julia Matthews, Ina Suresh, David Gresham, Pieter Spealman

Predicting seasonal influenza vaccine response using systemic gene expression profiling

medRxiv(2022)10.1101/2022.06.15.22276462

N/A

0DataRank · unranked

0 citations

Matthew Wai Heng Chung, Megan Hockman, Lauren Lashua, Emily M. Adney, Michael A. Carlock +4 more

Copy number variants alter local and global mutational tolerance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.30.521611

N/A

0DataRank · unranked

0 citations

Pieter Spealman, Julia Matthews, Élodie Caudal, Joseph Schacherer, David Gresham +1 more

Influenza A virus reassortment is strain dependent

PLoS Pathogens(2023)10.1371/journal.ppat.1011155

N/A

0DataRank · unranked

32 citations

Ilechukwu Agu, Ivy R. José, Sari Mäntynen, A. J. Campbell, Courtney Mattson +6 more

Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data

mBio(2023)10.1128/mbio.01046-23

N/A

0DataRank · unranked

21 citations

Katherine Johnson, Maximilian Knoll, Malik Khalfan, Bei Wang, Stacey Schultz‐Cherry +16 more

Inverted duplicate DNA sequences increase translocation rates through sequencing nanopores resulting in reduced base calling accuracy

Nucleic Acids Research(2020)10.1093/nar/gkaa206

N/A

0DataRank · unranked

48 citations

Jaden Burrell, David Gresham, Pieter Spealman

Increased mesoscale diffusivity in response to acute glucose starvation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.10.523352

N/A

0DataRank · unranked

10 citations

David Gresham, Liam J. Holt, Ying Xie

mRNA condensation fluidizes the cytoplasm

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.30.542963

N/A

0DataRank · unranked

8 citations

Tiewei Liu, David Gresham, Liam J. Holt, Ying Xie

Multilevel gene expression changes in lineages containing adaptive copy number variants

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.20.563336

N/A

0DataRank · unranked

6 citations

Carolina de Santana, Titir De, David Gresham, Pieter Spealman

Parallel proteomics and phosphoproteomics defines starvation signal specific processes in cell quiescence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.03.551843

N/A

0DataRank · unranked

0 citations

Daniel Tranchina, David Gresham, Siyu Sun

Polysome collapse and RNA condensation fluidize the cytoplasm

Molecular Cell(2024)10.1016/j.molcel.2024.06.024

N/A

0DataRank · unranked

35 citations

Tong Shu, Tiewei Liu, Marie-Christin Spindler, Julia Mahamid, Glen M. Hocky +3 more

Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference

Genome biology(2024)10.1186/s13059-023-03134-1

N/A

0DataRank · unranked

8 citations

Maggie Beheler-Amass, Christopher A. Jackson, Lionel Christiaen, David Gresham, Richard Bonneau +1 more

Patient subtyping analysis of baseline multi-omic data reveals distinct pre-immune states associated with antibody response to seasonal influenza vaccination

Clinical Immunology(2024)10.1016/j.clim.2024.110333

N/A

0DataRank · unranked

4 citations

Christian V. Forst, Drew R. Jones, David Gresham, Smruti Pushalkar, Shaohuan Wu +7 more

Patient Subtyping Analysis of Baseline Multi-omic Data Reveals Distinct Pre-immune States Predictive of Vaccination Responses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.18.576213

N/A

0DataRank · unranked

0 citations

Christian V. Forst, Drew R. Jones, David Gresham, Smruti Pushalkar, Shaohuan Wu +7 more

Obese individuals exhibit distinct temporal gene expression dynamics in response to influenza vaccination

Microbiology Spectrum(2025)10.1128/spectrum.03354-24

N/A

0DataRank · unranked

0 citations

Julia Matthews, Michael A. Carlock, Ted M. Ross, David Gresham, Elodie Ghedin +1 more

Copy number variation alters local and global mutational tolerance

Genome Research(2023)10.1101/gr.277625.122

N/A

0DataRank · unranked

18 citations

Pieter Spealman, Julia Matthews, Élodie Caudal, Joseph Schacherer, David Gresham +1 more

High performance single-cell gene regulatory network inference at scale: The Inferelator 3.0

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.03.442499

N/A

0DataRank · unranked

11 citations

Christopher A. Jackson, Giuseppe-Antonio Saldi, Andreas Tjärnberg, Aashna Shah, Aaron Watters +11 more

Simulation-based inference of evolutionary parameters from adaptation dynamics using neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.30.462581

N/A

0DataRank · unranked

2 citations

Julie N. Chuong, Fangfei Li, Gavin Sherlock, David Gresham, Yoav Ram +1 more

Fluctuating environments maintain genetic diversity through neutral fitness effects and balancing selection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.23.432553

N/A

0DataRank · unranked

0 citations

Daniel Tranchina, David Gresham, Farah Abdul‐Rahman

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0

Bioinformatics(2022)10.1093/bioinformatics/btac117

N/A

0DataRank · unranked

79 citations

Christopher A. Jackson, Giuseppe-Antonio Saldi, Andreas Tjärnberg, Aashna Shah, Aaron Watters +11 more