Barış Ekim

Also affiliated with IIT@MIT, Artificial Intelligence in Medicine (Canada), Massachusetts Institute of Technology

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 7 papers. Top paper: “A randomized parallel algorithm for efficiently finding near-optimal universal hitting sets”.

A randomized parallel algorithm for efficiently finding near-optimal universal hitting sets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.910513

N/A

0DataRank · unranked

11 citations

Bonnie Berger, Yaron Orenstein, Barış Ekim

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer

Cell Systems(2021)10.1016/j.cels.2021.08.009

N/A

0DataRank · unranked

126 citations

Bonnie Berger, Rayan Chikhi, Barış Ekim

Minimizer-space de Bruijn graphs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.09.447586

N/A

0DataRank · unranked

3 citations

Bonnie Berger, Rayan Chikhi, Barış Ekim

mapquik: Efficient low-divergence mapping of long reads in minimizer space

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.23.521809

N/A

0DataRank · unranked

2 citations

Kristoffer Sahlin, Paul Medvedev, Bonnie Berger, Rayan Chikhi, Barış Ekim

Efficient minimizer orders for large values of k using minimum decycling sets

Genome Research(2023)10.1101/gr.277644.123

N/A

0DataRank · unranked

19 citations

Lianrong Pu, Barış Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir +2 more

Efficient mapping of accurate long reads in minimizer space with mapquik

Genome Research(2023)10.1101/gr.277679.123

N/A

0DataRank · unranked

17 citations

Kristoffer Sahlin, Paul Medvedev, Bonnie Berger, Rayan Chikhi, Barış Ekim

Graph-based deep reinforcement learning for haplotype assembly with Ralphi

Genome Research(2025)10.1101/gr.280569.125

N/A

0DataRank · unranked

1 citations

Anant Maheshwari, Barış Ekim, Bonnie Berger, Victoria Popic, Enzo Battistella