Shaojie Zhang

Also affiliated with Hebei University of Technology, The People's Hospital of Guangxi Zhuang Autonomous Region, Beijing Information Science & Technology University, University of Science and Technology Beijing

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.428Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

RNA-NRD: a non-redundant RNA structural dataset for benchmarking and functional analysis

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad040

Top 43%

0.428DataRank

Top 43%5 citations

Md Mahfuzur Rahaman, Shahidul Islam, Shaojie Zhang, Nabila Shahnaz Khan

Papers

Driven by 34 papers — median percentile 57. Top paper: “iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching”.

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching

BMC Medical Genomics(2020)10.1186/s12920-020-0715-0

N/A

1.3DataRank · unranked

41 citations

Xiaoqian Jiang, Haixu Tang, Xiaofeng Wang, Tyler Bath, Diyue Bu +7 more

RNA-NRD: a non-redundant RNA structural dataset for benchmarking and functional analysis

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad040

Top 43%

0.428DataRank

Top 43%5 citations

Md Mahfuzur Rahaman, Shahidul Islam, Shaojie Zhang, Nabila Shahnaz Khan

RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID

PLoS Genetics(2021)10.1371/journal.pgen.1009315

N/A

0.416DataRank · unranked

15 citations

Junjie Shi, Xihong Lin, Shaojie Zhang, Degui Zhi, Ardalan Naseri

RNAMotifComp: a comprehensive method to analyze and identify structurally similar RNA motif families

Bioinformatics(2023)10.1093/bioinformatics/btad223

N/A

0.292DataRank · unranked

6 citations

Nabila Shahnaz Khan, Shaojie Zhang, Md Mahfuzur Rahaman

Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank

eLife(2024)10.7554/elife.81698

N/A

0.241DataRank · unranked

4 citations

Degui Zhi, Shaojie Zhang, Ardalan Naseri

Minimal positional substring cover is a haplotype threading alternative to Li and Stephens model

Genome Research(2023)10.1101/gr.277673.123

N/A

0.208DataRank · unranked

3 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

d-PBWT: dynamic positional Burrows–Wheeler transform

Bioinformatics(2021)10.1093/bioinformatics/btab117

N/A

0DataRank · unranked

19 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

RNAMotifContrast: a method to discover and visualize RNA structural motif subfamilies

Nucleic Acids Research(2021)10.1093/nar/gkab131

N/A

0DataRank · unranked

10 citations

Md Mahfuzur Rahaman, Shaojie Zhang, Shahidul Islam

Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts

GigaScience(2022)10.1093/gigascience/giac111

N/A

0DataRank · unranked

25 citations

Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi, Kecong Tang

Syllable-PBWT for space-efficient haplotype long-match query

Bioinformatics(2022)10.1093/bioinformatics/btac734

N/A

0DataRank · unranked

11 citations

Ardalan Naseri, Shaojie Zhang, Degui Zhi, Victor Wang

P-smoother: efficient PBWT smoothing of large haplotype panels

Bioinformatics Advances(2022)10.1093/bioadv/vbac045

N/A

0DataRank · unranked

5 citations

Ardalan Naseri, Victor Wang, Pramesh Shakya, Shaojie Zhang, Degui Zhi +1 more

Syllable-PBWT for space-efficient haplotype long-match query

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.31.478234

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Shaojie Zhang, Degui Zhi, Victor Wang

RaPID-Query for Fast Identity by Descent Search and Genealogical Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.03.478907

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Yuan Wei

mcPBWT: Space-efficient Multi-column PBWT Scanning Algorithm for Composite Haplotype Matching

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478879

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Pramesh Shakya

CircularSTAR3D: a stack-based RNA 3D structural alignment tool for circular matching

Nucleic Acids Research(2023)10.1093/nar/gkad222

N/A

0DataRank · unranked

5 citations

Shaojie Zhang, Xiaoli Chen

RaPID-Query for fast identity by descent search and genealogical analysis

Bioinformatics(2023)10.1093/bioinformatics/btad312

N/A

0DataRank · unranked

4 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Yuan Wei

Fast inference of genetic recombination rates in biobank scale data

Genome Research(2023)10.1101/gr.277676.123

N/A

0DataRank · unranked

5 citations

William Yue, Shaojie Zhang, Degui Zhi, Ardalan Naseri

Fast and accurate local ancestry inference with Recomb-Mix

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.17.567650

N/A

0DataRank · unranked

4 citations

Degui Zhi, Shaojie Zhang, Yuan Wei

Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522803

N/A

0DataRank · unranked

0 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

FastRecomb: Fast inference of genetic recombination rates in biobank scale data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.09.523304

N/A

0DataRank · unranked

0 citations

William Yue, Shaojie Zhang, Degui Zhi, Ardalan Naseri

RNAMotifProfile: a graph-based approach to build RNA structural motif profiles

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae128

N/A

0DataRank · unranked

0 citations

Shaojie Zhang, Md Mahfuzur Rahaman

CRIBAR: a fast and flexible sgRNA design tool for CRISPR imaging

Bioinformatics Advances(2024)10.1093/bioadv/vbaf022

N/A

0DataRank · unranked

0 citations

Md Mahfuzur Rahaman, Ardalan Naseri, Shaojie Zhang, Xiaoli Chen

Recomb-Mix: fast and accurate local ancestry inference

Bioinformatics(2025)10.1093/bioinformatics/btaf227

N/A

0DataRank · unranked

1 citations

Degui Zhi, Shaojie Zhang, Yuan Wei

Haplotype Matching with GBWT for Pangenome Graphs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.03.634410

N/A

0DataRank · unranked

0 citations

Seba Villalobos, Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

Dynamic µ -PBWT: Dynamic Run-length Compressed PBWT for Biobank Scale Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636479

N/A

0DataRank · unranked

0 citations

Ahsan Sanaullah, Degui Zhi, Shaojie Zhang, Pramesh Shakya

Haplotype-based Parallel PBWT for Biobank Scale Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636317

N/A

0DataRank · unranked

0 citations

Ahsan Sanaullah, Degui Zhi, Shaojie Zhang, Kecong Tang

GINClus: RNA structural motif clustering using graph isomorphism network

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf050

N/A

0DataRank · unranked

0 citations

Md Mahfuzur Rahaman, Shaojie Zhang, Nabila Shahnaz Khan

FRAME: fast reference-based ancestry makeup estimation tool

Bioinformatics Advances(2026)10.1093/bioadv/vbag006

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Pramesh Shakya

An Efficient Data Structure and Algorithm for Long-Match Query in Run-Length Compressed BWT

PubMed(2025)10.4230/lipics.wabi.2025.17

N/A

0DataRank · unranked

0 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription

Genome biology(2020)10.1186/s13059-020-02201-1

N/A

0DataRank · unranked

69 citations

Yao Wang, Xiangnan Wang, Xiaohui He, Yang Chen, Ardalan Naseri +7 more

LocalSTAR3D: a local stack-based RNA 3D structural alignment tool

Nucleic Acids Research(2020)10.1093/nar/gkaa453

N/A

0DataRank · unranked

10 citations

Nabila Shahnaz Khan, Shaojie Zhang, Xiaoli Chen

d-PBWT: dynamic positional Burrows-Wheeler transform

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.14.906487

N/A

0DataRank · unranked

3 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

CRISPR-based Live Imaging of Epigenetic Modification-Mediated Genome Reorganization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.18.954610

N/A

0DataRank · unranked

0 citations

Yao Wang, Yang Chen, Ardalan Naseri, Thoru Pederson, Jing Zheng +5 more

Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments

BMC Biology(2021)10.1186/s12915-021-00964-y

N/A

0DataRank · unranked

18 citations

Kecong Tang, Xin Geng, Junjie Shi, Jing Zhang, Pramesh Shakya +4 more

Shaojie Zhang

Indexed papers

Top data-sharing exemplar

Papers