Edward G. Ruby

Also affiliated with California Institute of Technology, Pacific Biosciences (United States)

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesNeuroscienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “The noncoding small RNA SsrA is released by Vibrio fischeri and modulates critical host responses”.

The noncoding small RNA SsrA is released by Vibrio fischeri and modulates critical host responses

PLoS Biology(2020)10.1371/journal.pbio.3000934

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74 citations

Clotilde Bongrand, Tara Essock‐Burns, Leo Wu, Margaret McFall‐Ngai, Edward G. Ruby +1 more

Interactions of Symbiotic Partners Drive the Development of a Complex Biogeography in the Squid-Vibrio Symbiosis

mBio(2020)10.1128/mbio.00853-20

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52 citations

Clotilde Bongrand, William E. Goldman, Edward G. Ruby, Margaret McFall‐Ngai, Tara Essock‐Burns

The impact of persistent colonization by Vibrio fischeri on the metabolome of the host squid Euprymna scolopes

Journal of Experimental Biology(2020)10.1242/jeb.212860

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17 citations

Silvia Moriano‐Gutierrez, Edward G. Ruby, Margaret McFall‐Ngai, Manuel Liebeke, Eric J. Koch

The cytokine MIF controls daily rhythms of symbiont nutrition in an animal–bacterial association

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2016864117

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12 citations

Clotilde Bongrand, Brittany D. Bennett, Susannah Lawhorn, Silvia Moriano‐Gutierrez, Marko Pende +7 more

HbtR, a Heterofunctional Homolog of the Virulence Regulator TcpP, Facilitates the Transition between Symbiotic and Planktonic Lifestyles in Vibrio fischeri

mBio(2020)10.1128/mbio.01624-20

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17 citations

Tara Essock‐Burns, Edward G. Ruby, Brittany D. Bennett

Tracking the cargo of extracellular symbionts into host tissues with correlated electron microscopy and nanoscale secondary ion mass spectrometry imaging

Cellular Microbiology(2020)10.1111/cmi.13177

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11 citations

Marie‐Stéphanie Aschtgen, Jonathan B. Lynch, Sabrina Koehler, Fangmin Chen, Stéphane Escrig +5 more

Using Colonization Assays and Comparative Genomics To Discover Symbiosis Behaviors and Factors in Vibrio fischeri

mBio(2020)10.1128/mbio.03407-19

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26 citations

Silvia Moriano‐Gutierrez, Philip Arevalo, Margaret McFall‐Ngai, Karen L. Visick, Martin F. Polz +2 more

HbtR, a heterofunctional homolog of the virulence regulator TcpP, facilitates the transition between symbiotic and planktonic lifestyles in Vibrio fischeri

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.019356

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1 citations

Tara Essock‐Burns, Edward G. Ruby, Brittany D. Bennett

Vibrio fischeri -derived outer membrane vesicles trigger host development: OMV deliver signals in the squid/vibrio symbiosis

UNC Libraries(2020)10.17615/ea6g-h564

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0 citations

Edward G. Ruby, William M. Goldman, Marie‐Stéphanie Aschtgen, Keith Wetzel, Margaret McFall‐Ngai

A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host

Nature Reviews Microbiology(2021)10.1038/s41579-021-00557-0

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144 citations

Eric V. Stabb, Edward G. Ruby, Karen L. Visick

Modeled microgravity alters lipopolysaccharide and outer membrane vesicle production of the beneficial symbiont Vibrio fischeri

npj Microgravity(2021)10.1038/s41526-021-00138-8

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32 citations

Yaneli Rodriguez-Ocasio, Jonathan B. Lynch, Edward G. Ruby, Jamie S. Foster, Madeline M. Vroom

Bacterial Quorum-Sensing Regulation Induces Morphological Change in a Key Host Tissue during the Euprymna scolopes-Vibrio fischeri Symbiosis

mBio(2021)10.1128/mbio.02402-21

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24 citations

Brittany D. Bennett, Daniel Francisco Arencibia, Silvia Moriano‐Gutierrez, Matthew C. I. Medeiros, Margaret McFall‐Ngai +2 more

Getting the Message Out: the Many Modes of Host-Symbiont Communication during Early-Stage Establishment of the Squid-Vibrio Partnership

mSystems(2021)10.1128/msystems.00867-21

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8 citations

Edward G. Ruby, Margaret McFall‐Ngai

MicroRNA-Mediated Regulation of Initial Host Responses in a Symbiotic Organ

mSystems(2021)10.1128/msystems.00081-21

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4 citations

Edward G. Ruby, Margaret McFall‐Ngai, Silvia Moriano‐Gutierrez

Independent host- and bacterium-based determinants protect a model symbiosis from phage predation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.09.451802

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1 citations

Brittany D. Bennett, Bryan D. Merrill, Edward G. Ruby, Andrew J. Hryckowian, Jonathan B. Lynch

Transitioning to confined spaces impacts bacterial swimming and escape response

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.15.460467

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1 citations

Nicholas G. James, Margaret McFall‐Ngai, Edward G. Ruby, Sangwoo Shin, Daisuke Takagi +1 more

Transitioning to confined spaces impacts bacterial swimming and escape response

Biophysical Journal(2022)10.1016/j.bpj.2022.04.008

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20 citations

Nicholas G. James, Margaret McFall‐Ngai, Edward G. Ruby, Sangwoo Shin, Daisuke Takagi +1 more

Evidence of Genomic Diversification in a Natural Symbiotic Population Within Its Host

Frontiers in Microbiology(2022)10.3389/fmicb.2022.854355

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12 citations

Eric J. Koch, Daniel R. Mende, Anna E. Romano, Susannah Lawhorn, Margaret McFall‐Ngai +3 more

Ciliated epithelia are key elements in the recruitment of bacterial partners in the squid-vibrio symbiosis

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.974213

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9 citations

Janna Nawroth, Eva Kanso, Farzana Nasrin, Edward G. Ruby, Margaret McFall‐Ngai +1 more

Maturation state of colonization sites promotes symbiotic resiliency in the Euprymna scolopes-Vibrio fischeri partnership

Microbiome(2023)10.1186/s40168-023-01509-x

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13 citations

Susannah Lawhorn, Leo Wu, Sawyer McClosky, Silvia Moriano‐Gutierrez, Edward G. Ruby +2 more

A new lexicon in the age of microbiome research

Philosophical Transactions of the Royal Society B Biological Sciences(2024)10.1098/rstb.2023.0060

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16 citations

Martin J. Blaser, Edward G. Ruby, Margaret McFall‐Ngai, Thomas C. G. Bosch

Bacterial growth dynamics in a rhythmic symbiosis

Molecular Biology of the Cell(2024)10.1091/mbc.e24-01-0044

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9 citations

Susannah Lawhorn, Clotilde Bongrand, James C. Kosmopoulos, Jill T. Kuwabara, Michael S. VanNieuwenhze +4 more

An acidic microenvironment produced by the V-type ATPase of Euprymna scolopes promotes specificity during Vibrio fischeri recruitment

Communications Biology(2024)10.1038/s42003-024-07348-2

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7 citations

Joani Viliunas, Sabrina Koehler, Angus B. Thies, Grischa Y. Chen, Mark S. Ladinsky +6 more

Developmental and transcriptomic responses of Hawaiian bobtail squid early stages to ocean warming and acidification

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.31.621237

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2 citations

José Ricardo Paula, Edward G. Ruby, José C. Xavier, Margaret McFall‐Ngai, Rui Rosa +2 more

Mutant gltS alleles enable a Vibrio fischeri D-glutamate auxotroph to grow with lower requirements for exogenous D-glutamate

Microbiology Spectrum(2025)10.1128/spectrum.01025-25

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0 citations

Richard F. Helm, Liu Yang, Edward G. Ruby, David L. Popham, Eric V. Stabb +1 more