Alexander Dobin

Biochemistry, Genetics and Molecular BiologyPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

22.0Author DataRank

Indexed papers

10in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 10 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Papers

Driven by 30 papers — median percentile 87. Top paper: “A comparative encyclopedia of DNA elements in the mouse genome”.

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Is it time to change the reference genome?

Genome Biology(2019)10.1186/s13059-019-1774-4

N/A

6.4DataRank · unranked

231 citations

Alexander Dobin, Jesse Gillis, Sara Ballouz

Perspectives on ENCODE

Nature(2020)10.1038/s41586-020-2449-8

N/A

4.7DataRank · unranked

227 citations

Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen Aken +95 more

Comparative transcriptomics reveals human-specific cortical features

Science(2023)10.1126/science.ade9516

N/A

2.8DataRank · unranked

205 citations

Janet Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro-Pacheco, Fenna M. Krienen +39 more

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.016972

N/A

2.4DataRank · unranked

90 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +99 more

The ENCODE Uniform Analysis Pipelines

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535623

Top 11%

2.0DataRank

Top 11%102 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +55 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

Landscape of transcription in human cells

Nature(2012)10.1038/nature11233

N/A

1.3DataRank · unranked

5354 citations

Qi Dai, Angelika Merkel, Timo Lassmann, Shinichi Morishita, Andrea Tanzer +91 more

A limited set of transcriptional programs define major cell types

Genome Research(2020)10.1101/gr.263186.120

Top 17%

1.2DataRank

Top 17%38 citations

Manuel Muñoz-Aguirre, Valentin Wucher, Carrie Davis, Diego Garrido-Martín, Sarah Djebali +13 more

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2021)10.1038/s41586-021-03465-8

N/A

1.0DataRank · unranked

818 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +101 more

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/120295

N/A

0.852DataRank · unranked

292 citations

Nicolas Stransky, Bo Li, Xiao Yang, Asma Bankapur, Carrie Ganote +10 more

Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

Genome Research(2022)10.1101/gr.275613.121

Top 28%

0.709DataRank

Top 28%21 citations

Sara Ballouz, Jesse Gillis, Alexander Dobin, Benjamin Kaminow

Comparative transcriptomics reveals human-specific cortical features

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.19.508480

N/A

0.613DataRank · unranked

24 citations

Janet Song, David Exposito-Alonso, Hamsini Suresh, Nathan J. Castro, Fenna M. Krienen +38 more

Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution

Nature Ecology & Evolution(2023)10.1038/s41559-023-02186-7

N/A

0.601DataRank · unranked

54 citations

Megan Crow, Nikolas L. Jorstad, Rebecca D. Hodge, Ed S. Lein, Alexander Dobin +3 more

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0.564DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

The ENCODE Uniform Analysis Pipelines

Research Square(2023)10.21203/rs.3.rs-3111932/v1

N/A

0.553DataRank · unranked

39 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +57 more

A mucus production programme promotes classical pancreatic ductal adenocarcinoma

Gut(2024)10.1136/gutjnl-2023-329839

N/A

0.533DataRank · unranked

34 citations

Georgi N. Yordanov, Yuan Hao, Astrid Deschênes, Juliene Hinds, Pascal Belleau +10 more

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100467

N/A

0.524DataRank · unranked

32 citations

Alexander Dobin, Mahmoud Ghandi, Anne Van Arsdale, Timothy L. Tickle, James Robinson +4 more

Stack: In-Context Learning of Single-Cell Biology

10.64898/2026.01.09.698608

N/A

0.373DataRank · unranked

11 citations

Abhinav Adduri, Dhruv Gautam, Lujing Wu, Courtney Kernick, Mary Margaret Coons +12 more

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2022)10.1038/s41586-022-04562-y

N/A

0.317DataRank · unranked

5 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +104 more

Conserved coexpression at single cell resolution across primate brains

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.20.508736

N/A

0.241DataRank · unranked

4 citations

Megan Crow, Nikolas L. Jorstad, Rebecca D. Hodge, Ed S. Lein, Alexander Dobin +3 more

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.02.454639

N/A

0.208DataRank · unranked

3 citations

Alexander Dobin, Mahmoud Ghandi, Anne Van Arsdale, Timothy L. Tickle, James Robinson +4 more

STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.05.442755

N/A

0DataRank · unranked

471 citations

Dinar Yunusov, Alexander Dobin, Benjamin Kaminow

Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3–FOXO1 in rhabdomyosarcoma

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2303859120

N/A

0DataRank · unranked

17 citations

Damianos Skopelitis, Marit W. Vermunt, Jonathan Preall, Osama E. Demerdash, Larissa M. N. de Almeida +18 more

STAR+WASP reduces reference bias in the allele-specific mapping of RNA-seq reads

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.21.576391

N/A

0DataRank · unranked

16 citations

Alexander Dobin, Rebecca Asiimwe

Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA-sequencing datasets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.20.524887

N/A

0DataRank · unranked

1 citations

Raditya Utama, Payal Naik, Alexander Dobin, David L. Spector, Rasmani Hazra

Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA sequencing datasets

Stem Cell Reports(2023)10.1016/j.stemcr.2023.10.004

N/A

0DataRank · unranked

8 citations

Raditya Utama, Payal Naik, Alexander Dobin, David L. Spector, Rasmani Hazra

MOESM1 of Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

Figshare(2019)10.6084/m9.figshare.10022309

Top 100%

0DataRank

Top 100%0 citations

Alexander Dobin, Bo Li, Nicolas Stransky, Nathalie Pochet, Prisca Liberali +1 more

Alexander Dobin

Indexed papers

Top data-sharing exemplar

Papers