Markus J. Buehler

Also affiliated with Department of Physics, Mathematics and Informatics, Computing Center, Atlantic Institute of Oriental Medicine, MIT-Harvard Center for Ultracold Atoms, Massachusetts Institute of Technology

Materials SciencePhysics and AstronomyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.518Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Learning the rules of peptide self-assembly through data mining with large language models

Science Advances(2025)10.1126/sciadv.adv1971

Top 37%

0.518DataRank

Top 37%20 citations

Sarah K. Yorke, Tuomas P. J. Knowles, Markus J. Buehler, Zhenze Yang

Papers

Driven by 73 papers — median percentile 63. Top paper: “Artificial intelligence and machine learning in design of mechanical materials”.

Artificial intelligence and machine learning in design of mechanical materials

Materials Horizons(2020)10.1039/d0mh01451f

N/A

0.965DataRank · unranked

623 citations

Zhenze Yang, Chi‐Hua Yu, Markus J. Buehler, Kai Guo

Learning the rules of peptide self-assembly through data mining with large language models

Science Advances(2025)10.1126/sciadv.adv1971

Top 37%

0.518DataRank

Top 37%20 citations

Sarah K. Yorke, Tuomas P. J. Knowles, Markus J. Buehler, Zhenze Yang

Understanding Plant Biomass via Computational Modeling

Advanced Materials(2020)10.1002/adma.202003206

N/A

0DataRank · unranked

71 citations

Kai Jin, Markus J. Buehler, Shengfei Zhou

Exploration of Biomass-Derived Activated Carbons for Use in Vanadium Redox Flow Batteries

ACS Sustainable Chemistry & Engineering(2020)10.1021/acssuschemeng.0c02427

N/A

0DataRank · unranked

54 citations

Diego López Barreiro, Antoni Forner‐Cuenca, Jack-William Barotta, Morgan J. Hawker, Gang Han +8 more

Sonification based de novo protein design using artificial intelligence, structure prediction, and analysis using molecular modeling

APL Bioengineering(2020)10.1063/1.5133026

N/A

0DataRank · unranked

51 citations

Markus J. Buehler, Chi‐Hua Yu

Machine learning model for fast prediction of the natural frequencies of protein molecules

RSC Advances(2020)10.1039/c9ra04186a

N/A

0DataRank · unranked

20 citations

Qingyi Yu, Markus J. Buehler, Zhao Qin

Probing the Role of Bone Lamellar Patterns through Collagen Microarchitecture Mapping, Numerical Modeling, and 3D‐Printing

Advanced Engineering Materials(2020)10.1002/adem.202000387

N/A

0DataRank · unranked

15 citations

Hyun-Chae Loh, Zhao Qin, Markus J. Buehler, Admir Mašić, Flavia Libonati +1 more

WebNet: A biomateriomic three-dimensional spider web neural net

Extreme Mechanics Letters(2020)10.1016/j.eml.2020.101034

N/A

0DataRank · unranked

17 citations

Isabelle Su, Markus J. Buehler, Eric L. Buehler

Mechanics of Mineralized Collagen Fibrils upon Transient Loads

ACS Nano(2020)10.1021/acsnano.0c02180

N/A

0DataRank · unranked

39 citations

Gang Seob Jung, Serena Danti, Markus J. Buehler, Mario Milazzo

Artificial intelligence method to design and fold alpha-helical structural proteins from the primary amino acid sequence

Extreme Mechanics Letters(2020)10.1016/j.eml.2020.100652

N/A

0DataRank · unranked

37 citations

Lingfei Wu, Hui Sun, Siyu Huo, Tengfei Ma, Eugene J. Lim +4 more

Wave Propagation and Energy Dissipation in Collagen Molecules

ACS Biomaterials Science & Engineering(2020)10.1021/acsbiomaterials.9b01742

N/A

0DataRank · unranked

35 citations

Gang Seob Jung, Serena Danti, Markus J. Buehler, Mario Milazzo

Adverse effects of Alport syndrome-related Gly missense mutations on collagen type IV: Insights from molecular simulations and experiments

Biomaterials(2020)10.1016/j.biomaterials.2020.119857

N/A

0DataRank · unranked

30 citations

Yimin Qiu, Gang Seob Jung, Yong‐Wei Zhang, Markus J. Buehler, David L. Kaplan +1 more

Effect of the silica nanoparticle size on the osteoinduction of biomineralized silk-silica nanocomposites

Acta Biomaterialia(2020)10.1016/j.actbio.2020.10.043

N/A

0DataRank · unranked

29 citations

Diego López Barreiro, Markus J. Buehler, David L. Kaplan, Zaira Martín‐Moldes

Mesomechanics of a three-dimensional spider web

Journal of the Mechanics and Physics of Solids(2020)10.1016/j.jmps.2020.104096

N/A

0DataRank · unranked

25 citations

Markus J. Buehler, Isabelle Su

The Order-Disorder Continuum: Linking Predictions of Protein Structure and Disorder through Molecular Simulation

Scientific Reports(2020)10.1038/s41598-020-58868-w

N/A

0DataRank · unranked

24 citations

Markus J. Buehler, Anna Tarakanova, Claire C. Hsu

Deep learning model to predict fracture mechanisms of graphene

npj 2D Materials and Applications(2021)10.1038/s41699-021-00228-x

N/A

0DataRank · unranked

83 citations

Chi-Hua Yu, Yu-Chuan Hsu, Markus J. Buehler, Andrew J. Lew

Molecular origin of viscoelasticity in mineralized collagen fibrils

Biomaterials Science(2021)10.1039/d0bm02003f

N/A

0DataRank · unranked

38 citations

Alessio David, Gang Seob Jung, Serena Danti, Markus J. Buehler, Mario Milazzo

ColGen: An end-to-end deep learning model to predict thermal stability of de novo collagen sequences

Journal of the mechanical behavior of biomedical materials/Journal of mechanical behavior of biomedical materials(2021)10.1016/j.jmbbm.2021.104921

N/A

0DataRank · unranked

34 citations

Eesha Khare, Om Narayan, Rachael N. Parker, David L. Kaplan, Markus J. Buehler +1 more

Designing and fabricating materials from fire using sonification and deep learning

iScience(2021)10.1016/j.isci.2021.102873

N/A

0DataRank · unranked

13 citations

Markus J. Buehler, Mario Milazzo

Interactive exploration of a hierarchical spider web structure with sound

Journal on Multimodal User Interfaces(2021)10.1007/s12193-021-00375-x

N/A

0DataRank · unranked

10 citations

Ian Hattwick, Christine Southworth, Evan Ziporyn, Ally Bisshop, Roland Mühlethaler +3 more

Fuzzy binding model of molecular interactions between tropoelastin and integrin alphaVbeta3

Biophysical Journal(2021)10.1016/j.bpj.2021.04.037

N/A

0DataRank · unranked

6 citations

Richard Wang, Anna Tarakanova, Markus J. Buehler, Anthony S. Weiss, Jazmin Ozsvar

A coarse-grained mechanical model for folding and unfolding of tropoelastin with possible mutations

Acta Biomaterialia(2021)10.1016/j.actbio.2021.07.032

N/A

0DataRank · unranked

6 citations

Nicola M. Pugno, Markus J. Buehler, Giuseppe Puglisi, Giuseppe Florio

Surface adhesion of viruses and bacteria: Defend only and/or vibrationally extinguish also?! A perspective

MRS Advances(2021)10.1557/s43580-021-00079-0

N/A

0DataRank · unranked

4 citations

Ayusman Sen, Markus J. Buehler, Manoj K. Kolel‐Veetil

End-to-End Deep Learning Model to Predict and Design Secondary Structure Content of Structural Proteins

ACS Biomaterials Science & Engineering(2022)10.1021/acsbiomaterials.1c01343

N/A

0DataRank · unranked

51 citations

Wei Chen, Yu-Hsuan Chiang, Kai Guo, Zaira Martín‐Moldes, David L. Kaplan +2 more

End-to-end prediction of multimaterial stress fields and fracture patterns using cycle-consistent adversarial and transformer neural networks

Biomedical Engineering Advances(2022)10.1016/j.bea.2022.100038

N/A

0DataRank · unranked

49 citations

Markus J. Buehler, Eric L. Buehler

FieldPerceiver: Domain agnostic transformer model to predict multiscale physical fields and nonlinear material properties through neural ologs

Materials Today(2022)10.1016/j.mattod.2022.05.020

N/A

0DataRank · unranked

48 citations

Markus J. Buehler

Modeling Atomistic Dynamic Fracture Mechanisms Using a Progressive Transformer Diffusion Model

Journal of Applied Mechanics(2022)10.1115/1.4055730

N/A

0DataRank · unranked

48 citations

Markus J. Buehler

Discovering design principles of collagen molecular stability using a genetic algorithm, deep learning, and experimental validation

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2209524119

N/A

0DataRank · unranked

44 citations

Chi‐Hua Yu, Constancio González Obeso, Mario Milazzo, David L. Kaplan, Markus J. Buehler +1 more

Rapid prediction of protein natural frequencies using graph neural networks

Digital Discovery(2022)10.1039/d1dd00007a

N/A

0DataRank · unranked

32 citations

Markus J. Buehler, Kai Guo

End-to-End Protein Normal Mode Frequency Predictions Using Language and Graph Models and Application to Sonification

ACS Nano(2022)10.1021/acsnano.2c07681

N/A

0DataRank · unranked

27 citations

Markus J. Buehler, Yiwen Hu

An automated biomateriomics platform for sustainable programmable materials discovery

Matter(2022)10.1016/j.matt.2022.10.003

N/A

0DataRank · unranked

26 citations

Sabrina C. Shen, Markus J. Buehler, Nicolas A. Lee

Role of the Mineral in the Self-Healing of Cracks in Human Enamel

ACS Nano(2022)10.1021/acsnano.1c10407

N/A

0DataRank · unranked

18 citations

Elia Beniash, Pupa U. P. A. Gilbert, Markus J. Buehler, Andrew J. Lew

Generative multiscale analysis of de novo proteome-inspired molecular structures and nanomechanical optimization using a VoxelPerceiver transformer model

Journal of the Mechanics and Physics of Solids(2022)10.1016/j.jmps.2022.105098

N/A

0DataRank · unranked

14 citations

Yu-Chuan Hsu, Markus J. Buehler, Zhenze Yang

Molecular simulations of the interfacial properties in silk–hydroxyapatite composites

Nanoscale(2022)10.1039/d2nr01989b

N/A

0DataRank · unranked

13 citations

Zaira Martín‐Moldes, Adrián Fernandez, Vincent Fitzpatrick, David L. Kaplan, Markus J. Buehler +1 more

PRESTO: Rapid protein mechanical strength prediction with an end-to-end deep learning model

Extreme Mechanics Letters(2022)10.1016/j.eml.2022.101803

N/A

0DataRank · unranked

17 citations

Bo Ni, Markus J. Buehler, Frank Y.C. Liu

Generating 3D architectured nature-inspired materials and granular media using diffusion models based on language cues

Oxford Open Materials Science(2022)10.1093/oxfmat/itac010

N/A

0DataRank · unranked

12 citations

Markus J. Buehler

Prediction of atomic stress fields using cycle-consistent adversarial neural networks based on unpaired and unmatched sparse datasets

Materials Advances(2022)10.1039/d2ma00223j

N/A

0DataRank · unranked

11 citations

Markus J. Buehler

Nanomechanical analysis of SARS-CoV-2 variants and predictions of infectiousness and lethality

Soft Matter(2022)10.1039/d1sm01181b

N/A

0DataRank · unranked

6 citations

Markus J. Buehler, Yiwen Hu

Generative design of de novo proteins based on secondary-structure constraints using an attention-based diffusion model

Chem(2023)10.1016/j.chempr.2023.03.020

N/A

0DataRank · unranked

88 citations

David L. Kaplan, Markus J. Buehler, Bo Ni

Designing architected materials for mechanical compression via simulation, deep learning, and experimentation

npj Computational Materials(2023)10.1038/s41524-023-01036-1

N/A

0DataRank · unranked

54 citations

Kai Jin, Markus J. Buehler, Andrew J. Lew

Generative Modeling, Design, and Analysis of Spider Silk Protein Sequences for Enhanced Mechanical Properties

Advanced Functional Materials(2023)10.1002/adfm.202311324

N/A

0DataRank · unranked

44 citations

David L. Kaplan, Markus J. Buehler, Wei Lu

Modeling and design of heterogeneous hierarchical bioinspired spider web structures using deep learning and additive manufacturing

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2305273120

N/A

0DataRank · unranked

41 citations

Nic A. Lee, Markus J. Buehler, Wei Lu

3D Printability of Silk/Hydroxyapatite Composites for Microprosthetic Applications

ACS Biomaterials Science & Engineering(2023)10.1021/acsbiomaterials.2c01357

N/A

0DataRank · unranked

40 citations

Vincent Fitzpatrick, Crystal E. Owens, Igor Matteo Carraretto, Gareth H. McKinley, David L. Kaplan +2 more

Molecular understanding of Ni 2+ -nitrogen family metal-coordinated hydrogel relaxation times using free energy landscapes

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2213160120

N/A

0DataRank · unranked

19 citations

Seth Cazzell, Jake Song, Niels Holten‐Andersen, Markus J. Buehler, Eesha Khare

A computational building block approach towards multiscale architected materials analysis and design with application to hierarchical metal metamaterials

Modelling and Simulation in Materials Science and Engineering(2023)10.1088/1361-651x/accfb5

N/A

0DataRank · unranked

33 citations

Markus J. Buehler

Predicting mechanical fields near cracks using a progressive transformer diffusion model and exploration of generalization capacity

Journal of materials research/Pratt's guide to venture capital sources(2023)10.1557/s43578-023-00892-3

N/A

0DataRank · unranked

27 citations

Markus J. Buehler

Learning from nature by leveraging integrative biomateriomics modeling toward adaptive and functional materials

MRS Bulletin(2023)10.1557/s43577-023-00610-8

N/A

0DataRank · unranked

18 citations

Markus J. Buehler, Sofia Arevalo

Unsupervised cross-domain translation via deep learning and adversarial attention neural networks and application to music-inspired protein designs

Patterns(2023)10.1016/j.patter.2023.100692

N/A

0DataRank · unranked

16 citations

Markus J. Buehler

Bond clusters control rupture force limit in shear loaded histidine-Ni 2+ metal-coordinated proteins

Nanoscale(2023)10.1039/d3nr01287e

N/A

0DataRank · unranked

8 citations

Darshdeep S. Grewal, Markus J. Buehler, Eesha Khare

Localization of Zn 2+ ions affects the structural folding and mechanics of Nereis virens Nvjp-1

Soft Matter(2023)10.1039/d3sm00360d

N/A

0DataRank · unranked

4 citations

Jaden Luo, Markus J. Buehler, Eesha Khare

Application of the Interagency and Modeling Analysis Group Model Verification Approach for Scientific Reproducibility in a Study of Biomineralization

ACS Biomaterials Science & Engineering(2023)10.1021/acsbiomaterials.3c00147

N/A

0DataRank · unranked

2 citations

Xiangjun Peng, Zaira Martín‐Moldes, Guy M. Genin, David L. Kaplan, Markus J. Buehler +1 more

MechAgents: Large language model multi-agent collaborations can solve mechanics problems, generate new data, and integrate knowledge

arXiv (Cornell University)(2023)10.48550/arxiv.2311.08166

N/A

0DataRank · unranked

3 citations

Markus J. Buehler, Bo Ni

Generative retrieval-augmented ontologic graph and multi-agent strategies for interpretive large language model-based materials design

arXiv (Cornell University)(2023)10.48550/arxiv.2310.19998

N/A

0DataRank · unranked

2 citations

Markus J. Buehler

ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a protein language diffusion model

PubMed(2023)10.48550/arxiv.2310.10605

N/A

0DataRank · unranked

1 citations

David L. Kaplan, Markus J. Buehler, Bo Ni

Modeling and design of heterogeneous hierarchical bioinspired spider web structures using generative deep learning and additive manufacturing

arXiv (Cornell University)(2023)10.48550/arxiv.2304.05137

N/A

0DataRank · unranked

0 citations

Nic A. Lee, Markus J. Buehler, Wei Lü

Crosslinker energy landscape effects on dynamic mechanical properties of ideal polymer hydrogels

arXiv (Cornell University)(2023)10.48550/arxiv.2310.02400

N/A

0DataRank · unranked

0 citations

Amadeus Alcantara, Nic Lee, Munir S. Skaf, Markus J. Buehler, Eesha Khare

SciAgents: Automating Scientific Discovery Through Bioinspired Multi‐Agent Intelligent Graph Reasoning

Advanced Materials(2024)10.1002/adma.202413523

N/A

0DataRank · unranked

98 citations

Markus J. Buehler, Alireza Ghafarollahi

ProtAgents: protein discovery via large language model multi-agent collaborations combining physics and machine learning

Digital Discovery(2024)10.1039/d4dd00013g

N/A

0DataRank · unranked

90 citations

Markus J. Buehler, Alireza Ghafarollahi

MechAgents: Large language model multi-agent collaborations can solve mechanics problems, generate new data, and integrate knowledge

Extreme Mechanics Letters(2024)10.1016/j.eml.2024.102131

N/A

0DataRank · unranked

89 citations

Markus J. Buehler, Bo Ni

Generative Retrieval-Augmented Ontologic Graph and Multiagent Strategies for Interpretive Large Language Model-Based Materials Design

ACS Engineering Au(2024)10.1021/acsengineeringau.3c00058

N/A

0DataRank · unranked

66 citations

Markus J. Buehler

Cephalo: Multi‐Modal Vision‐Language Models for Bio‐Inspired Materials Analysis and Design

Advanced Functional Materials(2024)10.1002/adfm.202409531

N/A

0DataRank · unranked

32 citations

Markus J. Buehler

Crosslinker energy landscape effects on dynamic mechanical properties of ideal polymer hydrogels

Materials Advances(2024)10.1039/d3ma00799e

N/A

0DataRank · unranked

13 citations

Amadeus C. S. de Alcântara, Nic Lee, Munir S. Skaf, Markus J. Buehler, Eesha Khare

Learning Collective Cell Migratory Dynamics from a Static Snapshot with Graph Neural Networks

PRX Life(2024)10.1103/prxlife.2.043010

N/A

0DataRank · unranked

8 citations

Florian Meyer, Shaoxun Huang, Yang Liu, Cristiana Lungu, Monilola A. Olayioye +3 more

AtomAgents: Alloy design and discovery through physics-aware multi-modal multi-agent artificial intelligence

arXiv (Cornell University)(2024)10.48550/arxiv.2407.10022

N/A

0DataRank · unranked

9 citations

Markus J. Buehler, Alireza Ghafarollahi

Molecular analysis and design using multimodal generative artificial intelligence via multi-agent modeling

ChemRxiv(2024)10.26434/chemrxiv-2024-nwm7n

N/A

0DataRank · unranked

4 citations

Markus J. Buehler, Isabella Stewart

PRefLexOR: Preference-based Recursive Language Modeling for Exploratory Optimization of Reasoning and Agentic Thinking

arXiv (Cornell University)(2024)10.48550/arxiv.2410.12375

N/A

0DataRank · unranked

2 citations

Markus J. Buehler

Learning Dynamics from Multicellular Graphs with Deep Neural Networks

PubMed(2024)10.48550/arxiv.2401.12196

N/A

0DataRank · unranked

1 citations

Florian Meyer, Shaoxun Huang, Yang Liu, Cristiana Lungu, Monilola A. Olayioye +3 more

Learning the rules of peptide self-assembly through data mining with large language models

arXiv (Cornell University)(2024)10.48550/arxiv.2411.05421

N/A

0DataRank · unranked

0 citations

Sarah K. Yorke, Tuomas P. J. Knowles, Markus J. Buehler, Zhenze Yang

PRefLexOR: preference-based recursive language modeling for exploratory optimization of reasoning and agentic thinking

npj Artificial Intelligence(2025)10.1038/s44387-025-00003-z

N/A

0DataRank · unranked

20 citations

Markus J. Buehler

Molecular analysis and design using generative artificial intelligence via multi-agent modeling

Molecular Systems Design & Engineering(2025)10.1039/d4me00174e

N/A

0DataRank · unranked

12 citations

Markus J. Buehler, Isabella Stewart

Molecular-Scale Interactions at Mineralized Collagen Interfaces Prevent Network Percolation, Preserving Compliance

ACS Nano(2025)10.1021/acsnano.5c04697

N/A

0DataRank · unranked

1 citations

Mario Milazzo, Eesha Khare, Munir S. Skaf, Stavros Thomopoulos, Guy M. Genin +2 more

LifeGPT: topology-agnostic generative pretrained transformer model for cellular automata

npj Artificial Intelligence(2025)10.1038/s44387-025-00014-w

N/A

0DataRank · unranked

1 citations

Markus J. Buehler, Jaime Berkovich

Observations of 3 nm Silk Nanofibrils Exfoliated from Natural Silkworm Silk Fibers

ACS Materials Letters(2020)10.1021/acsmaterialslett.9b00461

N/A

0DataRank · unranked

74 citations

Shengjie Ling, Quanzhou Yao, Qunyang Li, Debo Hu, Qing Dai +5 more

Markus J. Buehler

Indexed papers

Top data-sharing exemplar

Papers