Pratiti Bandopadhayay

Also affiliated with Boston Children's Hospital, Harvard University, Dana-Farber Cancer Institute, Dana-Farber/Boston Children's Cancer and Blood Disorders Center

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

13.2Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Papers

Driven by 39 papers — median percentile 93. Top paper: “Pan-cancer analysis of whole genomes”.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Liquid biopsy detection of genomic alterations in pediatric brain tumors from cell-free DNA in peripheral blood, CSF, and urine

Neuro-Oncology(2022)10.1093/neuonc/noab299

N/A

3.1DataRank · unranked

87 citations

Denisse Rotem, Gregory Gydush, Sarah C. Reed, Justin Rhoades, Gavin Ha +16 more

Pathway and network analysis of more than 2500 whole cancer genomes

Nature Communications(2020)10.1038/s41467-020-14367-0

Top 9%

2.3DataRank

Top 9%117 citations

David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguél Vázquez, Abdullah Kahraman +95 more

PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation

Nature Communications(2022)10.1038/s41467-022-28198-8

N/A

1.3DataRank · unranked

58 citations

Zachary J. Reitman, Sophie D. Lu, Graham Buchan, Gabrielle Gionet, Frank Dubois +51 more

Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq

Science(2018)10.1126/science.aao4750

N/A

0.989DataRank · unranked

728 citations

Itay Tirosh, Volker Hovestadt, Leah E. Escalante, Nathan D. Mathewson, Cyril Neftel +46 more

CloneSifter: enrichment of rare clones from heterogeneous cell populations

BMC Biology(2020)10.1186/s12915-020-00911-3

N/A

0.944DataRank · unranked

26 citations

FuNien Tsai, Anthony J. Garrity, Ryan O’Rourke, Lisa Brenan, Patricia Ho +7 more

Treatment-Induced Tumor Dormancy through YAP-Mediated Transcriptional Reprogramming of the Apoptotic Pathway

Cancer Cell(2020)10.1016/j.ccell.2019.12.006

N/A

0.925DataRank · unranked

477 citations

Yao Liu, Ciric To, Tinghu Zhang, Mengyang Fan, Amir Vajdi +39 more

A road map for the treatment of pediatric diffuse midline glioma

Cancer Cell(2023)10.1016/j.ccell.2023.11.002

N/A

0.653DataRank · unranked

24 citations

Wajd N. Al‐Holou, Marta M. Alonso, Jamie N. Anastas, Pratiti Bandopadhayay, Tara Barron +70 more

Aberrant DNA repair reveals a vulnerability in histone H3.3-mutant brain tumors

Nucleic Acids Research(2024)10.1093/nar/gkad1257

N/A

0.619DataRank · unranked

19 citations

Sandra Piquet, Odile Chevallier, Juliette Dabin, Siau‐Kun Bai, Byungjin Kim +23 more

FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits

Cancer Research(2022)10.1158/0008-5472.can-22-0671

N/A

0.477DataRank · unranked

23 citations

Paloma Cejas, Dayle K. Wang, Smruti Patel, David W. Wu, Phonepasong Arounleut +44 more

Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer

Nature Communications(2024)10.1038/s41467-024-49944-0

Top 46%

0.400DataRank

Top 46%8 citations

Hersh Gupta, Abigail Ward, Yvonne Li, Duong Doan, Alyaa Al‐Ibraheemi +28 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

ALK Amplification and Rearrangements Are Recurrent Targetable Events in Congenital and Adult Glioblastoma

Clinical Cancer Research(2023)10.1158/1078-0432.ccr-21-3521

N/A

0DataRank · unranked

19 citations

Ross Giglio, Maya Srikanth Graham, Guadalupe Garcia, Seth Malinowski, Jared K. Woods +41 more

Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539399

N/A

0DataRank · unranked

8 citations

Jorge Ruiz-Orera, Ian Yannuzzi, Rakesh Murugesan, Adam Brown, Karl R. Clauser +19 more

Noninvasive molecular subtyping of pediatric low-grade glioma with self-supervised transfer learning

medRxiv(2023)10.1101/2023.08.04.23293673

N/A

0DataRank · unranked

5 citations

Zezhong Ye, Anna Zapaishchykova, Yining Zha, Aidan Boyd, Sridhar Vajapeyam +16 more

A compendium of Amplification-Related Gain Of Sensitivity (ARGOS) genes in human cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.16.571980

N/A

0DataRank · unranked

2 citations

Michaël Schubert, Nicholas Khuu, Maria F. Suárez Peredo Rodríguez, Kaimeng Huang, Michelle Swift +21 more

Data from FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits

(2023)10.1158/0008-5472.c.6514136.v1

N/A

0DataRank · unranked

0 citations

Paloma Cejas, Dayle K. Wang, Smruti Patel, David W. Wu, Phonepasong Arounleut +44 more

Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma

Molecular Cell(2024)10.1016/j.molcel.2023.12.003

N/A

0DataRank · unranked

68 citations

Jorge Ruiz-Orera, Ian Yannuzzi, Rakesh Murugesan, Adam Brown, Karl R. Clauser +19 more

Unraveling the complexity of the senescence-associated secretory phenotype in adamantinomatous craniopharyngioma using multimodal machine learning analysis

Neuro-Oncology(2024)10.1093/neuonc/noae015

N/A

0DataRank · unranked

51 citations

John Apps, John Jeang, Keanu Chee, Stephen Medlin, Eric M. Jackson +22 more

Noninvasive Molecular Subtyping of Pediatric Low-Grade Glioma with Self-Supervised Transfer Learning

Radiology Artificial Intelligence(2024)10.1148/ryai.230333

N/A

0DataRank · unranked

30 citations

Zezhong Ye, Anna Zapaischykova, Yining Zha, Aidan Boyd, Sridhar Vajapeyam +16 more

Multimodal deep learning improves recurrence risk prediction in pediatric low-grade gliomas

Neuro-Oncology(2024)10.1093/neuonc/noae173

N/A

0DataRank · unranked

30 citations

Divyanshu Tak, Zezhong Ye, Anna Zapaishchykova, Jirapat Likitlersuang, Juan Carlos Pardo +18 more

Effective targeting of PDGFRA-altered high-grade glioma with avapritinib

Cancer Cell(2025)10.1016/j.ccell.2025.02.018

N/A

0DataRank · unranked

43 citations

Sina Neyazi, Kallen Schwark, Maria Trissal, Alexander Beck, Jenna LaBelle +78 more

Deep learning volumetrics reveal distinct clinical trajectories for pediatric low-grade gliomas under surveillance: A multicenter study

Neuro-Oncology Advances(2025)10.1093/noajnl/vdaf145

N/A

0DataRank · unranked

1 citations

Anna Zapaishchykova, Aidan Boyd, Divyanshu Tak, John Zielke, Maryam Mahootiha +16 more

N-terminal modification of Histone H3 inhibits H3K27M-mediated loss of H3K27 trimethylation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.24.634760

N/A

0DataRank · unranked

0 citations

Daren F Zhang, Adam F Kebede, Isabella Gainey, Olohireme Esther Famous, Rameen Beroukhim +2 more

LGG-05. SINGLE CELL RNA SEQUENCING REVEALS MITOGENIC AND PROGENITOR GENE PROGRAMS IN BRAF-REARRANGED PILOCYTIC ASTROCYTOMAS

Neuro-Oncology(2019)10.1093/neuonc/noz036.148

N/A

0DataRank · unranked

0 citations

Guillaume Bergthold, Kristine Pelton, Sarah Becker, Robert Jones, Claire Sinai +31 more

Recurrent breakpoints in the BRD4 locus reduce toxicity associated with gene amplification

Cell Genomics(2025)10.1016/j.xgen.2025.100815

N/A

0DataRank · unranked

0 citations

Simona Dalin, Sophie Webster, Ofer Shapira, John Busanovich, Shahab Sarmashghi +4 more

LGG-13. RESOLVING TRANSCRIPTIONAL PROFILES IN BRAF-REARRANGED PILOCYTIC ASTROCYTOMA USING SINGLE CELL RNA SEQUENCING

Neuro-Oncology(2018)10.1093/neuonc/noy059.355

N/A

0DataRank · unranked

0 citations

Guillaume Bergthold, Kristine Pelton, Sarah Becker, Robert Jones, Zach Herbert +16 more

GENT-16. REDEFINING THE CELLULAR ARCHITECTURE OF ADULT AND PEDIATRIC GLIOBLASTOMAS THROUGH LARGE-SCALE SINGLE-CELL ANALYSES

Neuro-Oncology(2016)10.1093/neuonc/now212.322

N/A

0DataRank · unranked

0 citations

Itay Tirosh, Cyril Neftel, Volker Hovestadt, Christine Hebert, McKenzie Shaw +17 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

DIPG-06. REDEFINING THE CELLULAR ARCHITECTURE OF DIFFUSE MIDLINE GLIOMAS WITH H3 K27M MUTATIONS THROUGH LARGE-SCALE SINGLE-CELL ANALYSES

Neuro-Oncology(2017)10.1093/neuonc/nox083.021

N/A

0DataRank · unranked

0 citations

Volker Hovestadt, Itay Tirosh, McKenzie Shaw, David N. Louis, Irene Slavc +12 more

HG-110SINGLE-CELL TRANSCRIPTOME ANALYSIS IN PEDIATRIC HEMISPHERIC AND MIDLINE HIGH-GRADE GLIOMAS

Neuro-Oncology(2016)10.1093/neuonc/now073.106

N/A

0DataRank · unranked

0 citations

Itay Tirosh, Leah E. Escalante, Andrew S. Venteicher, Liliana Goumnerova, Kristine Pelton +14 more

Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis

Cell(2020)10.1016/j.cell.2020.11.012

N/A

0DataRank · unranked

200 citations

Shriya Deshmukh, Selin Jessa, Djihad Hadjadj, Véronique Lisi, Augusto Faria Andrade +59 more

A first-generation pediatric cancer dependency map

Nature Genetics(2021)10.1038/s41588-021-00819-w

N/A

0DataRank · unranked

162 citations

Guillaume Kugener, Lillian M. Guenther, Clare F. Malone, Adam D. Durbin, Andrew L. Hong +21 more

Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma

Nature Communications(2022)10.1038/s41467-022-32430-w

N/A

0DataRank · unranked

89 citations

Shu Wang, Sylwia A. Stopka, Jia‐Ren Lin, Clarence Yapp, Cecily C. Ritch +18 more

Structural variants shape driver combinations and outcomes in pediatric high-grade glioma

Nature Cancer(2022)10.1038/s43018-022-00403-z

N/A

0DataRank · unranked

48 citations

Ofer Shapira, Noah F. Greenwald, Travis Zack, Jeremiah A. Wala, Jessica W. Tsai +35 more

Integrated response analysis of pediatric low-grade gliomas during and after targeted therapy treatment

Neuro-Oncology Advances(2022)10.1093/noajnl/vdac182

N/A

0DataRank · unranked

20 citations

Jungwhan John Choi, Hakim Ouaalam, Efrain Aguilar Murillo, Kee Kiat Yeo, Jayne Vogelzang +7 more

Single Cell Spatial Analysis Reveals the Topology of Immunomodulatory Purinergic Signaling in Glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.12.475925

N/A

0DataRank · unranked

6 citations

Shu Wang, Sylwia A. Stopka, Jia‐Ren Lin, Rumana Rashid, Clarence Yapp +12 more

Aberrant DNA repair is a vulnerability in histone H3.3-mutant brain tumors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.29.510093

N/A

0DataRank · unranked

1 citations

Giulia Giacomini, Sandra Piquet, Odile Chevallier, Juliette Dabin, Siau‐Kun Bai +19 more

Pratiti Bandopadhayay

Indexed papers

Top data-sharing exemplar

Papers