Jeffrey R. Johnson

Also affiliated with University of California, San Francisco, Quantitative BioSciences, Icahn School of Medicine at Mount Sinai

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 35 papers. Top paper: “The Global Phosphorylation Landscape of SARS-CoV-2 Infection”.

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

Cell(2020)10.1016/j.cell.2020.06.034

N/A

10.3DataRank · unranked

1152 citations

Danish Memon, Bjoern Meyer, Kris M. White, Veronica V. Rezelj, Miguel Correa Marrero +73 more

The AMBRA1 E3 ligase adaptor regulates the stability of cyclin D

Nature(2021)10.1038/s41586-021-03474-7

N/A

4.5DataRank · unranked

168 citations

Chuan Li, Edwin E. Jeng, Samuel Loebell, Myung Chang Lee, Christopher W. Murray +25 more

Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages

eLife(2020)10.7554/elife.51461

N/A

1.9DataRank · unranked

69 citations

Danielle L. Swaney, David Jimenez‐Morales, Jeffrey R. Johnson, Nicholas E. Garelis, Teresa Repasy +8 more

Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets

Nature Communications(2023)10.1038/s41467-023-41442-z

N/A

1.2DataRank · unranked

62 citations

Michael McGregor, Mehdi Bouhaddou, Benjamin J. Polacco, Eun‐Young Kim, Thông Nguyen +50 more

Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing

Nature(2020)10.1038/s41586-020-2577-1

N/A

1.0DataRank · unranked

858 citations

Shuofeng Yuan, Xin Yin, Laura Martin‐Sancho, Naoko Matsunaga, Lars Pache +40 more

A Large-scale Drug Repositioning Survey for SARS-CoV-2 Antivirals

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.16.044016

N/A

0.710DataRank · unranked

113 citations

Shuofeng Yuan, Xin Yin, Laura Martin‐Sancho, Naoko Matsunaga, Sebastian Burgstaller-Muehlbacher +26 more

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection

Cell(2020)10.1016/j.cell.2020.05.035

N/A

0.574DataRank · unranked

45 citations

Matthew Angel, Yixuan Ma, Elizabeth Sloan, Guojun Wang, Carles Martínez‐Romero +49 more

SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.20.457146

N/A

0.535DataRank · unranked

14 citations

Benjamin E. Nilsson-Payant, Andrew P. Kurland, Chengjin Ye, Tomer M. Yaron, Jared L. Johnson +11 more

Quantitative Proteomic Analysis Reveals apoE4-Dependent Phosphorylation of the Actin-Regulating Protein VASP

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100541

N/A

0.381DataRank · unranked

10 citations

Samuel J. Lord, Yuan Zhou, Gwendolyn M. Jang, Benjamin J. Polacco, Manon Eckhardt +10 more

Endosomal cAMP production broadly impacts the cellular phosphoproteome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.06.425636

N/A

0.241DataRank · unranked

4 citations

Michelle Trester-Zedlitz, Billy W. Newton, Grace E. Peng, Jeffrey R. Johnson, David Jimenez‐Morales +4 more

Integrative multi-omics analysis in vivo identifies influenza virus host factors

iScience(2025)10.1016/j.isci.2025.113644

N/A

0.208DataRank · unranked

3 citations

Benjamin J. Polacco, Manon Eckhardt, Max W. Chang, Carles Martínez‐Romero, Kayla Adkins-Travis +29 more

The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners

Microbiology Spectrum(2024)10.1128/spectrum.00453-24

N/A

0.171DataRank · unranked

2 citations

Eleanor McMahon, Danielle L. Swaney, Jessica Sherry, Khavong Pha, Kathleen Adams-Boone +7 more

Glypican-1 upregulation elicited in response to a cell-impermeable kinase inhibitor and its overexpression enhance HIV-1 infection

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685002

N/A

0.104DataRank · unranked

1 citations

Natalia Cheshenko, Heng Pan, Ronald Cutler, Joshua N. Buckler, Andreas Luxenburger +5 more

Generation of a high yield vaccine backbone for influenza B virus in embryonated chicken eggs

npj Vaccines(2023)10.1038/s41541-023-00603-3

N/A

0DataRank · unranked

10 citations

Madhusudan Rajendran, Divya Kriti, Andrew P. Kurland, Jeffrey R. Johnson, Harm van Bakel +4 more

Immunization of Mice with Virus-Like Vesicles of Kaposi Sarcoma-Associated Herpesvirus Reveals a Role for Antibodies Targeting ORF4 in Activating Complement-Mediated Neutralization

Journal of Virology(2023)10.1128/jvi.01600-22

N/A

0DataRank · unranked

8 citations

Romin Roshan, Wendell Miley, Nazzarena Labò, James Zhen, Andrew P. Kurland +13 more

A Chemical Proteomics Approach to Discover Regulators of Innate Immune Signaling

Viruses(2023)10.3390/v15051112

N/A

0DataRank · unranked

1 citations

Boris Bonaventure, Jeffrey R. Johnson, Andrew P. Kurland

Immunological landscape of human lymphoid explants during measles virus infection

JCI Insight(2024)10.1172/jci.insight.172261

N/A

0DataRank · unranked

3 citations

Aum R. Patel, Andrew P. Kurland, Shu Horiuchi, Arianna S Moss, Emma J. DeGrace +12 more

The Chlamydia trachomatis secreted effector CebN targets nucleoporins and Rae1 to antagonize STAT1 nuclear import

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.25.587017

N/A

0DataRank · unranked

9 citations

Cherilyn A. Elwell, Xavier Tijerina, Madison A. Elliott, Yennifer Delgado, Jocelyn Ni +20 more

Spatial control of sensory adaptation modulates mechanosensing in Pseudomonas aeruginosa

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.27.582188

N/A

0DataRank · unranked

0 citations

Marco J. Kühn, Henriette Macmillan, Yuki F. Inclán, Ivan Chavez, John Von Dollen +6 more

Context matters: DNA virus infection reshapes DNA damage response pathways

Cell Systems(2024)10.1016/j.cels.2024.03.008

N/A

0DataRank · unranked

0 citations

Jeffrey R. Johnson

An integrated proteomics approach identifies phosphorylation sites on viral and host proteins that regulate West Nile virus infection

Cell Reports(2025)10.1016/j.celrep.2025.115728

N/A

0DataRank · unranked

5 citations

Minghua Li, Melissa Molho, Lauren Berish, Andrew Isopi, Mary O’Mara +9 more

Nuclear activities and interactome of the NS5 protein of Tick-Borne Encephalitis Virus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.29.691275

N/A

0DataRank · unranked

1 citations

Aïssatou Aïcha Sow, Elodie Le Seac’h, Dana Hawasheen, Margarida Bonifacio, Mikaël Feracci +13 more

The Chlamydia effector Dre1 binds dynactin to reposition host organelles during infection

Cell Reports(2025)10.1016/j.celrep.2025.115509

N/A

0DataRank · unranked

0 citations

Komal Ishwar Pawar, Lee Dolat, Erin P. Smith, I-Chang Chang, Khavong Pha +12 more

Envelope protein ubiquitination drives entry and pathogenesis of Zika virus

Nature(2020)10.1038/s41586-020-2457-8

N/A

0DataRank · unranked

166 citations

Hongjie Xia, Leopoldo Aguilera-Aguirre, Adam Hage, Sarah van Tol, Chao Shan +17 more

Comparative analysis of macrophage post-translational modifications during intracellular bacterial pathogen infection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.116772

N/A

0DataRank · unranked

6 citations

Trevor J. Parry, Teresa Repasy, Kristina Geiger, Erik Verschueren, Jonathan M. Budzik +8 more

The E3 ligase TRIM1 ubiquitinates LRRK2 and controls its localization, degradation, and toxicity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.336578

N/A

0DataRank · unranked

2 citations

Farbod Shavarebi, Molly FitzGibbon, Elizabeth M. Earley, Hannah Ahrendt, Lotus Lum +22 more

Endosomal cAMP production broadly impacts the cellular phosphoproteome

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100907

N/A

0DataRank · unranked

58 citations

Michelle Trester-Zedlitz, Billy W. Newton, Grace E. Peng, Jeffrey R. Johnson, David Jimenez‐Morales +4 more

Evaluating a New Class of AKT/mTOR Activators for HIV Latency-Reversing Activity Ex Vivo and In Vivo

Journal of Virology(2021)10.1128/jvi.02393-20

N/A

0DataRank · unranked

25 citations

Roland Schwarzer, William Brantley, Benjamin Varco-Merth, Hannah S. Sperber, Philip A. Hull +27 more

The RNA helicase DHX16 recognizes specific viral RNA to trigger RIG-I-dependent innate antiviral immunity

Cell Reports(2022)10.1016/j.celrep.2022.110434

N/A

0DataRank · unranked

36 citations

Preeti Bharaj, Sarah van Tol, María I. Giraldo, María González-Orozco, Karl M. Valerdi +13 more

Global post-translational modification profiling of HIV-1-infected cells reveals mechanisms of host cellular pathway remodeling

Cell Reports(2022)10.1016/j.celrep.2022.110690

N/A

0DataRank · unranked

32 citations

David C. Crosby, Judd F. Hultquist, Andrew P. Kurland, Prithy Adhikary, Donna Li +16 more

The E3 ligase TRIM1 ubiquitinates LRRK2 and controls its localization, degradation, and toxicity

The Journal of Cell Biology(2022)10.1083/jcb.202010065

N/A

0DataRank · unranked

18 citations

Farbod Shavarebi, Molly FitzGibbon, Elizabeth M. Earley, Hannah Ahrendt, Lotus Lum +22 more

Chlamydia trachomatis effector Dre1 interacts with dynactin to reposition host organelles during infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.15.488217

N/A

0DataRank · unranked

10 citations

Lee Dolat, Eleanor McMahon, Danielle L. Swaney, Robert J. Bastidas, Jeffrey R. Johnson +5 more

Defining blood-induced microglia functions in neurodegeneration through multiomic profiling

Nature Immunology(2023)10.1038/s41590-023-01522-0

N/A

0DataRank · unranked

127 citations

Zhaoqi Yan, Karuna Dixit, Jeffrey R. Johnson, Mehdi Bouhaddou, Anke Meyer‐Franke +16 more

Generation of host-directed and virus-specific antivirals using targeted protein degradation promoted by small molecules and viral RNA mimics

Cell Host & Microbe(2023)10.1016/j.chom.2023.05.030

N/A

0DataRank · unranked

39 citations

Jessica Ho, Fanye Meng, Simin Zheng, Andrew P. Kurland, Lu Tian +11 more

SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication

mBio(2023)10.1128/mbio.01007-23

N/A

0DataRank · unranked

22 citations

Benjamin E. Nilsson-Payant, Boris Bonaventure, Andrew P. Kurland, Chengjin Ye, Tomer M. Yaron +11 more