Youyi Fong

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with University of Washington, Fred Hutch Cancer Center

MedicineImmunology and MicrobiologyMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 42 papers. Top paper: “Immune correlates analysis of the mRNA-1273 COVID-19 vaccine efficacy clinical trial”.

Immune correlates analysis of the mRNA-1273 COVID-19 vaccine efficacy clinical trial

Science(2022)10.1126/science.abm3425

N/A

17.7DataRank · unranked

1207 citations

David C. Montefiori, Adrian B. McDermott, Youyi Fong, David Benkeser, Weiping Deng +38 more

Immune correlates analysis of the ENSEMBLE single Ad26.COV2.S dose vaccine efficacy clinical trial

Nature Microbiology(2022)10.1038/s41564-022-01262-1

N/A

2.6DataRank · unranked

93 citations

Adrian B. McDermott, David Benkeser, Sanne Roels, Daniel J Stieh, An Vandebosch +56 more

Examining protective effects of SARS-CoV-2 neutralizing antibodies after vaccination or monoclonal antibody administration

Nature Communications(2023)10.1038/s41467-023-39292-w

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1.9DataRank · unranked

44 citations

Meagan P. O’Brien, Jonathan Fintzi, Michael P. Fay, David C. Montefiori, Allyson Mateja +19 more

Comparing antibody assays as correlates of protection against COVID-19 in the COVE mRNA-1273 vaccine efficacy trial

Science Translational Medicine(2023)10.1126/scitranslmed.ade9078

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1.3DataRank · unranked

48 citations

David C. Montefiori, Adrian B. McDermott, Youyi Fong, Holly Janes, Weiping Deng +43 more

Neutralizing antibody correlate of protection against severe-critical COVID-19 in the ENSEMBLE single-dose Ad26.COV2.S vaccine efficacy trial

Nature Communications(2024)10.1038/s41467-024-53727-y

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0.644DataRank · unranked

21 citations

Ollivier Hyrien, Youyi Fong, David Benkeser, Sanne Roels, Daniel J Stieh +56 more

Omicron COVID-19 immune correlates analysis of a third dose of mRNA-1273 in the COVE trial

Nature Communications(2024)10.1038/s41467-024-52348-9

N/A

0.428DataRank · unranked

9 citations

Youyi Fong, Jonathan Fintzi, Eric Chun‐Pu Chu, Holly Janes, Avi Kenny +37 more

Neutralizing Antibody Immune Correlates for a Recombinant Protein Vaccine in the COVAIL Trial

Clinical Infectious Diseases(2024)10.1093/cid/ciae465

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0.251DataRank · unranked

3 citations

Lauren Dang, Bo Zhang, Jonathan Fintzi, Shiyu Chen, Jing Wang +84 more

Analysis of Antibody Markers as Immune Correlates of Risk of Severe COVID-19 in the PREVENT-19 Efficacy Trial of the NVX-CoV2373 Recombinant Protein Vaccine

Clinical Infectious Diseases(2025)10.1093/cid/ciaf558

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0.104DataRank · unranked

1 citations

Yunda Huang, Ying Huang, Wayne Woo, Alice McGarry, Germán Áñez +37 more

Four-parameter paired response curve for serial dilution assays

Journal of Biopharmaceutical Statistics(2021)10.1080/10543406.2021.1931271

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0DataRank · unranked

0 citations

Sallie R. Permar, Georgia D. Tomaras, Youyi Fong

Respiratory syncytial virus prevention within reach: the vaccine and monoclonal antibody landscape

The Lancet Infectious Diseases(2022)10.1016/s1473-3099(22)00291-2

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0DataRank · unranked

443 citations

Jonne Terstappen, Ranju Baral, Azucena Bardají, Philippe Beutels, Ursula J. Buchholz +36 more

A controlled effects approach to assessing immune correlates of protection

Biostatistics(2022)10.1093/biostatistics/kxac024

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0DataRank · unranked

18 citations

Youyi Fong, Avi Kenny, Marco Carone, Peter B. Gilbert

A controlled effects approach to assessing immune correlates of protection

Biostatistics(2022)10.1093/biostatistics/kxac24

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0DataRank · unranked

10 citations

Youyi Fong, Avi Kenny, Marco Carone, Peter B. Gilbert

Immune Correlates Analysis of the PREVENT-19 COVID-19 Vaccine Efficacy Clinical Trial

medRxiv(2022)10.1101/2022.06.22.22276362

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0DataRank · unranked

15 citations

Yunda Huang, David Benkeser, Lindsay N. Carpp, Germán Áñez, Wayne Woo +35 more

Immune Correlates Analysis of a Single Ad26.COV2.S Dose in the ENSEMBLE COVID-19 Vaccine Efficacy Clinical Trial

medRxiv(2022)10.1101/2022.04.06.22272763

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0DataRank · unranked

12 citations

Adrian B. McDermott, David Benkeser, Sanne Roels, Daniel J Stieh, An Vandebosch +56 more

Testing a global null hypothesis using ensemble machine learning methods

Statistics in Medicine(2022)10.1002/sim.9362

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0DataRank · unranked

0 citations

Youyi Fong, Ying Huang, Sunwoo Han

Fast Estimation and Choice of Confidence Interval Methods for Step Regression

Research Square(2022)10.21203/rs.3.rs-1946081/v1

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0DataRank · unranked

0 citations

Youyi Fong, Jarrod Kath, Shuangcheng Hua

Immune correlates analysis of the PREVENT-19 COVID-19 vaccine efficacy clinical trial

Nature Communications(2023)10.1038/s41467-022-35768-3

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0DataRank · unranked

102 citations

Yunda Huang, David Benkeser, Lindsay N. Carpp, Germán Áñez, Wayne Woo +35 more

Immune correlates analysis of a phase 3 trial of the AZD1222 (ChAdOx1 nCoV-19) vaccine

npj Vaccines(2023)10.1038/s41541-023-00630-0

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0DataRank · unranked

40 citations

Youyi Fong, Holly Janes, Elizabeth J. Kelly, Ian Hirsch, Stephanie Sproule +37 more

Stochastic Interventional Vaccine Efficacy and Principal Surrogate Analyses of Antibody Markers as Correlates of Protection against Symptomatic COVID-19 in the COVE mRNA-1273 Trial

Viruses(2023)10.3390/v15102029

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0DataRank · unranked

17 citations

Nima S. Hejazi, Bryan S. Blette, Lindsay N. Carpp, David Benkeser, David C. Montefiori +38 more

Optimizing Deep Learning-Based Segmentation of Densely Packed Cells using Cell Surface Markers

Research Square(2023)10.21203/rs.3.rs-3307496/v1

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0DataRank · unranked

4 citations

Khamsone Phasouk, Jia Zhu, Youyi Fong, Sunwoo Han

Examining protective effects of SARS-CoV-2 neutralizing antibodies after vaccination or monoclonal antibody administration

UNC Libraries(2023)10.17615/gg43-ax44

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0DataRank · unranked

0 citations

David Benkeser, Baden L.R., Holly Janes, David C. Montefiori, Isa F. +19 more

A Deferred-Vaccination Design to Assess Durability of COVID-19 Vaccine Effect After the Placebo Group Is Vaccinated

UNC Libraries(2023)10.17615/wz35-3h79

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0DataRank · unranked

0 citations

Michael P. Fay, Dean Follmann, Deborah Donnell, James G. Kublin, Myron S. Cohen +24 more

Immune correlates analysis of the Imbokodo (HVTN 705/HPX2008) efficacy trial of a mosaic HIV-1 vaccine regimen evaluated in Southern African people assigned female sex at birth: a two-phase case-control study

EBioMedicine(2024)10.1016/j.ebiom.2024.105320

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0DataRank · unranked

16 citations

Janine van Duijn, One Dintwe, Jack Heptinstall, Randy I. Burnham, Sheetal Sawant +93 more

Four statistical frameworks for assessing an immune correlate of protection (surrogate endpoint) from a randomized, controlled, vaccine efficacy trial

Vaccine(2024)10.1016/j.vaccine.2024.02.071

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0DataRank · unranked

20 citations

Youyi Fong, Nima S. Hejazi, Avi Kenny, Ying Huang, Marco Carone +3 more

Durability of Protection Against COVID-19 Through the Delta Surge for the NVX-CoV2373 Vaccine

Clinical Infectious Diseases(2024)10.1093/cid/ciae081

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0DataRank · unranked

10 citations

Allyson Mateja, Michael P. Fay, Craig A. Magaret, Yunda Huang, Youyi Fong +8 more

Optimizing deep learning-based segmentation of densely packed cells using cell surface markers

BMC Medical Informatics and Decision Making(2024)10.1186/s12911-024-02502-6

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0DataRank · unranked

5 citations

Khamsone Phasouk, Jia Zhu, Youyi Fong, Sunwoo Han

Omicron COVID-19 immune correlates analysis of a third dose of mRNA-1273 in the COVE trial

UNC Libraries(2024)10.17615/18qe-2h49

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0DataRank · unranked

0 citations

Fichtenbaum C.J, Youyi Fong, Isabel Reeder, Gilbert P.B., Spyros A. Kalams +34 more

Negative Control Outcome Adjustment in Early-Phase Randomized Trials: Estimating Vaccine Effects on Immune Responses in HIV Exposed Uninfected Infants

arXiv (Cornell University)(2024)10.48550/arxiv.2410.08078

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0DataRank · unranked

0 citations

Bo Zhang, Genevieve G. Fouda, Youyi Fong, Holly Janes, Ethan Ashby

GeM-LR: Discovering predictive biomarkers for small datasets in vaccine studies

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012581

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0DataRank · unranked

0 citations

Rachel L. Spreng, Kelly E. Seaton, S. Moses Dennison, Lindsay C. Dahora, Daniel J. Schuster +8 more

Limitations of acyclovir and identification of potent HSV antivirals using 3D bioprinted human skin equivalents

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.04.626896

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0DataRank · unranked

0 citations

Ian Hayman, Kristy Derr, Paige Derr, Shayne Frebert, Zina Itkin +10 more

HVTN 123: A Phase 1, Randomized Trial Comparing Safety and Immunogenicity of CH505TF gp120 Produced by Stably and Transiently Transfected Cell Lines

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae558

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0DataRank · unranked

0 citations

L. W. Preston Church, Colleen F. Kelley, Samuel T. Robinson, Yiwen Lu, Briana D. Furch +13 more

Limitations of acyclovir and identification of potent HSV antivirals using 3D bioprinted human skin equivalents

Nature Communications(2025)10.1038/s41467-025-64245-w

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0DataRank · unranked

7 citations

Ian Hayman, Kristy Derr, Paige Derr, Shayne Frebert, Zina Itkin +10 more

Neutralizing antibody immune correlates in COVAIL trial recipients of an mRNA second COVID-19 vaccine boost

Nature Communications(2025)10.1038/s41467-025-55931-w

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0DataRank · unranked

9 citations

Youyi Fong, Lauren Dang, Jonathan Fintzi, Shiyu Chen, Jing Wang +43 more

Fast grid search and bootstrap‐based inference for continuous two‐phase polynomial regression models

Environmetrics(2020)10.1002/env.2664

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0DataRank · unranked

17 citations

Youyi Fong, Hyunju Son

Immune correlates analysis of antibody responses against SARS-CoV-2 variants in the ENSEMBLE vaccine efficacy trial

iScience(2025)10.1016/j.isci.2025.113660

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0DataRank · unranked

1 citations

Youyi Fong, Lars van der Laan, Fei Heng, Ying Huang, Yiwen Lu +61 more

Forward Stepwise Deep Autoencoder-Based Monotone Nonlinear Dimensionality Reduction Methods

Journal of Computational and Graphical Statistics(2020)10.1080/10618600.2020.1856119

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0DataRank · unranked

9 citations

Jun Xu, Youyi Fong

Threshold-Based Subgroup Testing in Logistic Regression Models in Two-Phase Sampling Designs

Journal of the Royal Statistical Society Series C (Applied Statistics)(2020)10.1111/rssc.12459

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0DataRank · unranked

8 citations

Juhee Cho, Youyi Fong, Ying Huang

Immunobridging efficacy of a tetravalent dengue vaccine against dengue and against hospitalized dengue from children/adolescents to adults in highly endemic countries

Transactions of the Royal Society of Tropical Medicine and Hygiene(2020)10.1093/trstmh/traa154

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0DataRank · unranked

4 citations

Zoe Moodie, Michal Juraska, Youyi Fong, Lindsay N. Carpp, Laurent Chambonneau +5 more

Assessing Durability of Vaccine Effect Following Blinded Crossover in COVID-19 Vaccine Efficacy Trials

medRxiv(2020)10.1101/2020.12.14.20248137

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0DataRank · unranked

25 citations

Jonathan Fintzi, Michael P. Fay, Holly Janes, Lindsey R. Baden, Hana M. El Sahly +25 more

Improving random forest predictions in small datasets from two-phase sampling designs

BMC Medical Informatics and Decision Making(2021)10.1186/s12911-021-01688-3

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0DataRank · unranked

137 citations

Brian D. Williamson, Youyi Fong, Sunwoo Han

Frequent Development of Broadly Neutralizing Antibodies in Early Life in a Large Cohort of Children With Human Immunodeficiency Virus

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab629

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0DataRank · unranked

12 citations

Youyi Fong, Shuk Hang Li, Maria Dennis, Joshua Eudailey, Ashley N. Nelson +10 more

Frequent development of broadly neutralizing antibodies in early life in a large cohort of HIV-infected children

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.07.443081

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0DataRank · unranked

0 citations

Youyi Fong, Shuk Hang Li, Maria Dennis, Joshua Eudailey, Ashley N. Nelson +10 more