Cui Tao

ORCID: 0000-0002-4267-1924

Also affiliated with WinnMed, Mayo Clinic in Arizona, Mayo Clinic in Florida, Artificial Intelligence in Medicine (Canada), University at Buffalo, State University of New York

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.9Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa058

Top 14%

1.5DataRank

Top 14%34 citations

Jingcheng Du, Yongqun He, Hsing-Yi Song, Mohcine Madkour, Guozheng Rao +9 more

Papers

Driven by 68 papers — median percentile 61. Top paper: “Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning”.

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab014

N/A

1.9DataRank · unranked

36 citations

Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si +5 more

Artificial intelligence-powered pharmacovigilance: A review of machine and deep learning in clinical text-based adverse drug event detection for benchmark datasets

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104621

N/A

1.7DataRank · unranked

66 citations

Wei Tao, Zehan Li, Zenan Sun, Li Fang, Susan H. Fenton +3 more

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa058

Top 14%

1.5DataRank

Top 14%34 citations

Jingcheng Du, Yongqun He, Hsing-Yi Song, Mohcine Madkour, Guozheng Rao +9 more

An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad068

N/A

0.773DataRank · unranked

24 citations

Yifang Dang, Zhaoyi Sun, Ying Ding, Jyotishman Pathak, Cui Tao +3 more

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO)

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad096

N/A

0.713DataRank · unranked

25 citations

Fang Li, Xinyue Hu, Vipina K. Keloth, Meng Zhang, Sunyang Fu +9 more

Leverage Real-world Longitudinal Data in Large Clinical Research Networks for Alzheimer’s Disease and Related Dementia (ADRD)

medRxiv(2020)10.1101/2020.08.03.20167619

Top 34%

0.581DataRank

Top 34%9 citations

Zhaoyi Chen, Jiayi Tong, Chongliang Luo, Tianchen Lyu, Cui Tao +4 more

An ontology-based approach for harmonization and cross-cohort query of Alzheimer’s disease data resources

BMC Medical Informatics and Decision Making(2023)10.1186/s12911-023-02250-z

Top 35%

0.562DataRank

Top 35%12 citations

Xiaojin Li, Guo‐Qiang Zhang, Cui Tao, Paul E. Schulz, the Alzheimer’s Disease Neuroimaging Initiative +2 more

COVID-19 trial graph: a linked graph for COVID-19 clinical trials

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab078

Top 39%

0.484DataRank

Top 39%8 citations

Qing Wang, Jingqi Wang, Prerana Ramesh, Yang Xiang, Xiaoqian Jiang +2 more

Unpacking adverse events and associations post COVID-19 vaccination: a deep dive into vaccine adverse event reporting system data

Expert Review of Vaccines(2023)10.1080/14760584.2023.2292203

N/A

0.416DataRank · unranked

15 citations

Sori Kim Lundin, Jianfu Li, Wei Tao, Yifang Dang, Yong Chen +2 more

Semantics-Powered Healthcare Engineering and Data Analytics

Journal of Healthcare Engineering(2017)10.1155/2017/7983473

N/A

0.396DataRank · unranked

13 citations

Cui Tao, Jiang Bian, Michel J. Dumontier, William R. Hogan, Zhe He

A health consumer ontology of fast food information

PubMed(2020)10.1109/bibm49941.2020.9313375

Top 47%

0.388DataRank

Top 47%5 citations

Jing Wang, Grace Xiong, Kirk Roberts, Cui Tao, Muhammad Amith

VaxBot-HPV: A GPT-based Chatbot for Answering HPV Vaccine-related Questions

Research Square(2024)10.21203/rs.3.rs-4876692/v1

N/A

0.360DataRank · unranked

10 citations

Yiming Li, Jianfu Li, Manqi Li, Evan Yu, Muhammad Amith +4 more

Explainable artificial intelligence and domain adaptation for predicting HIV infection with graph neural networks

Annals of Medicine(2024)10.1080/07853890.2024.2407063

Top 50%

0.352DataRank

Top 50%7 citations

Jingcheng Du, Yang Xiang, Xinyue Hu, Jingna Feng, Xi Luo +5 more

AI-powered model for accurate prediction of MCI-to-AD progression

Acta Pharmaceutica Sinica B(2025)10.1016/j.apsb.2025.01.027

N/A

0.330DataRank · unranked

8 citations

Jingna Feng, Xinyue Hu, Fang Li, Sori Kim Lundin, Paul E. Schulz +2 more

Translating motivational interviewing for the HPV vaccine into a computable ontology model for automated AI conversational interaction

PubMed(2024)10.1145/3613905.3651051

N/A

0.292DataRank · unranked

6 citations

Muhammad Amith, Ana Neumann, Jane Hamilton, Lu Tang, Lara S. Savas +2 more

Exploring multimodal large language models on transthoracic Echocardiogram (TTE) tasks for cardiovascular decision support

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104930

N/A

0.269DataRank · unranked

5 citations

Yiming Li, Zenan Sun, Evan Yu, Ahmed Abdelhameed, Weiguo Cao +13 more

A natural language processing approach to detect inconsistencies in death investigation notes attributing suicide circumstances

Communications Medicine(2024)10.1038/s43856-024-00631-7

N/A

0.165DataRank · unranked

2 citations

Yiliang Zhou, Ziqiang Han, Cui Tao, Yunyu Xiao, Ying Ding +3 more

Developing provider digital twins for personalized provider-patient communication via a RAG-based conversational framework

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.12.007

N/A

0.104DataRank · unranked

1 citations

Yutong Hu, Jianfu Li, Garit Gemeinhardt, Fang Li, Muhammad Amith +4 more

PSB 2019 Workshop on Text Mining and Visualization for Precision Medicine

Biocomputing 2019(2018)10.1142/9789813279827_0042

N/A

0.104DataRank · unranked

1 citations

ZHIYONG LU, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen +14 more

Understanding Public Perceptions of Measles from Twitter Using Multi-Task Convolutional Neural Networks

Studies in health technology and informatics(2022)10.3233/shti220149

N/A

0.104DataRank · unranked

1 citations

Jingcheng Du, Lu Tang, Cui Tao, Samuel Wang

Constructing A Conversation-First Dialogue Model for Comprehensive, Evidence-Based Counseling for HPV Vaccination for Young Adults

Lecture notes in computer science(2025)10.1007/978-3-031-93502-2_5

N/A

0.104DataRank · unranked

1 citations

Chenying Weng, Serena Hou, Lara S. Savas, Ana Neumann, Nicole L. Moore +6 more

Towards Formal Computable Representation of Clinical Trial Eligibility Criteria for Alzheimer's Disease

medRxiv(2022)10.1101/2022.03.21.22272707

N/A

0DataRank · unranked

0 citations

Hansi Zhang, Xing He, Matthew Diller, Qian Li, Shubo Tian +5 more

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs

Journal of Biomedical Semantics(2022)10.1186/s13326-022-00276-2

N/A

0DataRank · unranked

4 citations

Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui, Warren Manuel

Comparability of clinical trials and spontaneous reporting data regarding COVID-19 vaccine safety

Scientific Reports(2022)10.1038/s41598-022-13809-7

N/A

0DataRank · unranked

9 citations

Jingcheng Du, Adam Cuker, Ebbing Lautenbach, David A. Asch, Gregory A. Poland +3 more

Toward a standard formal semantic representation of the model card report

BMC Bioinformatics(2022)10.1186/s12859-022-04797-6

N/A

0DataRank · unranked

18 citations

Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li +3 more

Advancing Biomedicine with Graph Representation Learning: Recent Progress, Challenges, and Future Directions

Yearbook of Medical Informatics(2023)10.1055/s-0043-1768735

N/A

0DataRank · unranked

11 citations

Yi Nian, Zenan Sun, Cui Tao, Fang Li

Machine learning-based donor permission extraction from informed consent documents

BMC Bioinformatics(2023)10.1186/s12859-023-05568-7

N/A

0DataRank · unranked

5 citations

Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris +4 more

DEVO: an ontology to assist with dermoscopic feature standardization

BMC Medical Informatics and Decision Making(2023)10.1186/s12911-023-02251-y

N/A

0DataRank · unranked

3 citations

Rebecca Lin, Muhammad Amith, Cynthia Wang, Jeremy G. Light, John Strickley +2 more

Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research

PubMed(2023)10.1145/3543873.3587601

N/A

0DataRank · unranked

3 citations

Licong Cui, Kirk Roberts, Cui Tao, Muhammad Amith

AE-GPT: Using Large Language Models to Extract Adverse Events from Surveillance Reports-A Use Case with Influenza Vaccine Adverse Events

arXiv (Cornell University)(2023)10.48550/arxiv.2309.16150

N/A

0DataRank · unranked

3 citations

Jianfu Li, Jianping He, Cui Tao, Yiming Li

Named Entity Recognition and Normalization for Alzheimer’s Disease Eligibility Criteria

PubMed(2023)10.1109/ichi57859.2023.00100

N/A

0DataRank · unranked

2 citations

Cui Tao, Zenan Sun

Associations of Antihypertensive Medication Consumption and Drug-Drug Interaction with Statin and Metformin with Reduced Alzheimer's Disease and Related Dementias Risk among Hypertensive Patients with Mild Cognitive Impairment using High Volume Claims Data

Research Square(2023)10.21203/rs.3.rs-2629005/v1

N/A

0DataRank · unranked

1 citations

Sori Kim Lundin, Xinyue Hu, Jingna Feng, Karl Lundin Remnélius, Yong Chen +1 more

Advancing Biomedicine with Graph Representation Learning: Recent Progress, Challenges, and Future Directions

arXiv (Cornell University)(2023)10.48550/arxiv.2306.10456

N/A

0DataRank · unranked

0 citations

Yi Nian, Zenan Sun, Cui Tao, Li Fang

Self-explainable Graph Neural Network for Alzheimer's Disease And Related Dementias Risk Prediction

arXiv (Cornell University)(2023)10.48550/arxiv.2309.06584

N/A

0DataRank · unranked

0 citations

Zenan Sun, Yi Nian, Wang, Yichen, Yifang Dang, Li Fang +4 more

Mining on Alzheimer’s diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing

BMC Bioinformatics(2022)10.1186/s12859-022-04934-1

N/A

0DataRank · unranked

33 citations

Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li +5 more

RefAI: a GPT-powered retrieval-augmented generative tool for biomedical literature recommendation and summarization

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae129

N/A

0DataRank · unranked

60 citations

Jeff Zhao, Manqi Li, Yifang Dang, Evan Y. Yu, Jianfu Li +18 more

AE-GPT: Using Large Language Models to extract adverse events from surveillance reports-A use case with influenza vaccine adverse events

PLoS ONE(2024)10.1371/journal.pone.0300919

N/A

0DataRank · unranked

53 citations

Jianfu Li, Jianping He, Cui Tao, Yiming Li

VaxBot-HPV: a GPT-based chatbot for answering HPV vaccine-related questions

JAMIA Open(2024)10.1093/jamiaopen/ooaf005

N/A

0DataRank · unranked

28 citations

Jianfu Li, Manqi Li, Evan Yu, Danniel Rhee, Muhammad Amith +5 more

Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models

Journal of Biomedical Semantics(2024)10.1186/s13326-024-00318-x

N/A

0DataRank · unranked

25 citations

Yiming Li, Yuanyi Pan, Jinjing Guo, Zenan Sun, Fang Li +3 more

Empowering Alzheimer’s caregivers with conversational AI: a novel approach for enhanced communication and personalized support

npj Biomedical Innovations.(2024)10.1038/s44385-024-00004-8

N/A

0DataRank · unranked

19 citations

Kimia Tuz Zaman, Xin Wang, Juan Li, Bo Xie, Cui Tao +1 more

Evaluating MedDRA-to-ICD terminology mappings

BMC Medical Informatics and Decision Making(2024)10.1186/s12911-023-02375-1

N/A

0DataRank · unranked

18 citations

Yixue Feng, Fang Li, Jin Ding, Danyal Tahseen, Ezekiel Hinojosa +3 more

Self-Explainable Graph Neural Network for Alzheimer Disease and Related Dementias Risk Prediction: Algorithm Development and Validation Study

JMIR Aging(2024)10.2196/54748

N/A

0DataRank · unranked

17 citations

Zenan Sun, Yi Nian, Yichen Wang, Yifang Dang, Fang Li +4 more

Online continual decoding of streaming EEG signal with a balanced and informative memory buffer

Neural Networks(2024)10.1016/j.neunet.2024.106338

N/A

0DataRank · unranked

12 citations

Zhenyi Wang, Fang Li, Gianfranco Doretto, Donald Adjeroh, Yiyi Yin +2 more

Ensemble pretrained language models to extract biomedical knowledge from literature

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae061

N/A

0DataRank · unranked

19 citations

Qiang Wei, Liang‐Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang +11 more

FedFSA: Hybrid and federated framework for functional status ascertainment across institutions

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104623

N/A

0DataRank · unranked

14 citations

Heling Jia, Maria Vassilaki, Vipina K. Keloth, Yifang Dang, Yujia Zhou +13 more

Impact of climate change on vaccine responses and inequity

Nature Climate Change(2024)10.1038/s41558-024-02192-y

N/A

0DataRank · unranked

10 citations

Yifang Dang, Yiming Li, Cui Tao, Junguk Hur, Yongqun He +1 more

The ontology of fast food facts: conceptualization of nutritional fast food data for consumers and semantic web applications

BMC Medical Informatics and Decision Making(2021)10.1186/s12911-021-01636-1

N/A

0DataRank · unranked

11 citations

Chidinma Onye, Tracey Ledoux, Grace Xiong, Cui Tao, Muhammad Amith

Retain and Adapt: Online Sequential EEG Classification With Subject Shift

IEEE Transactions on Artificial Intelligence(2024)10.1109/tai.2024.3385390

N/A

0DataRank · unranked

5 citations

Zhenyi Wang, Li Shen, Gianfranco Doretto, Donald Adjeroh, Fang Li +2 more

Lessons learned from annotation of VAERS reports on adverse events following influenza vaccination and related to Guillain-Barré syndrome

BMC Medical Informatics and Decision Making(2024)10.1186/s12911-023-02374-2

N/A

0DataRank · unranked

3 citations

Su Wang, Hangyu Ji, Hsing-Yi Song, Cui Tao, Madhuri Sankaranarayanapillai

Quantitatively assessing the impact of the quality of SNOMED CT subtype hierarchy on cohort queries

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae272

N/A

0DataRank · unranked

3 citations

Xiaojin Li, Yan Huang, Jay Shi, Rashmie Abeysinghe, Cui Tao +4 more

Using Machine Learning–Based Approaches for the Detection and Classification of Human Papillomavirus Vaccine Misinformation: Infodemiology Study of Reddit Discussions

Journal of Medical Internet Research(2021)10.2196/26478

N/A

0DataRank · unranked

35 citations

Sharice M. Preston, Hanxiao Sun, Ross Shegog, Rachel Cunningham, Julie A. Boom +4 more

Application of artificial intelligence and machine learning for HIV prevention interventions

The Lancet HIV(2021)10.1016/s2352-3018(21)00247-2

N/A

0DataRank · unranked

59 citations

Jingcheng Du, Kayo Fujimoto, Fang Li, John A. Schneider, Cui Tao +1 more

Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019)

BMC Medical Informatics and Decision Making(2020)10.1186/s12911-020-01292-x

N/A

0DataRank · unranked

1 citations

Cui Tao, Jiang Bian, Rui Zhang, Zhe He

Matching Patients to Clinical Trials using LLaMA 2 Embeddings and Siamese Neural Network

medRxiv(2024)10.1101/2024.06.28.24309677

N/A

0DataRank · unranked

3 citations

Sivaraman Rajaganapathy, Yue Yu, Cui Tao, Maria Vassilaki, Nansu Zong +1 more

Uncovering Misattributed Suicide Causes through Annotation Inconsistency Detection in Death Investigation Notes

arXiv (Cornell University)(2024)10.48550/arxiv.2403.19432

N/A

0DataRank · unranked

1 citations

Yiliang Zhou, Ziqiang Han, Cui Tao, Yunyu Xiao, Ying Ding +3 more

Prompting Large Language Models for Clinical Temporal Relation Extraction

arXiv (Cornell University)(2024)10.48550/arxiv.2412.04512

N/A

0DataRank · unranked

0 citations

Laila Rasmy, Haifang Li, Jianfu Li, Zenan Sun, Evan Yu +3 more

Improving entity recognition using ensembles of deep learning and fine-tuned large language models: A case study on adverse event extraction from VAERS and social media

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104789

N/A

0DataRank · unranked

26 citations

Deepthi Viswaroopan, William He, Jianfu Li, Xu Zuo, Hua Xu +2 more

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa180

N/A

0DataRank · unranked

33 citations

Firat Tiryaki, Yujia Zhou, Yang Xiang, Cui Tao, Hua Xu +2 more

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Journal of Medical Internet Research(2020)10.2196/16981

N/A

0DataRank · unranked

57 citations

Hangyu Ji, Yujia Zhou, Fang Li, Jingcheng Du, Laila Rasmy +7 more

“Down the Rabbit Hole” of Vaccine Misinformation on YouTube: Network Exposure Study

Journal of Medical Internet Research(2020)10.2196/23262

N/A

0DataRank · unranked

96 citations

Kayo Fujimoto, Muhammad Amith, Rachel Cunningham, Rebecca A. Costantini, Felicia York +4 more

Bridging the Computational-Experimental Gap: Leveraging Large Language Model to Prioritize Alzheimer’s Therapeutics Based on Comparison of Learning Models

Research Square(2025)10.21203/rs.3.rs-7811754/v1

N/A

0DataRank · unranked

0 citations

Shuteng Niu, Yifeng Xu, Jianfu Li, Xinyue Hu, Duan Liu +6 more

Leveraging Vulnerabilities in Temporal Graph Neural Networks via Strategic High-Impact Assaults

PubMed(2025)10.1145/3746252.3761282

N/A

0DataRank · unranked

1 citations

Lijing Zhu, Haifang Li, Pengze Li, Jingna Feng, Tiehang Duan +4 more

Integrating a conceptual consent permission model from the informed consent ontology for software application execution

medRxiv(2025)10.1101/2025.01.31.25321503

N/A

0DataRank · unranked

0 citations

Yongqun He, Elise Smith, Marceline Harris, Frank J. Manion, Cui Tao +1 more

Developing a High-Performing Network Computation of Big Bipartite Network Data Toward Alcohol Use Disorder Treatment Referrals

PubMed(2025)10.1109/icsc64641.2025.00044

N/A

0DataRank · unranked

0 citations

Sharon Andrews, Angela M. Heads, Bruno Kluwe‐Schiavon, Atchyutha Veni Choday, Ramya Poonam +4 more

Teleportation: Defense Against Stealing Attacks of Data-Driven Healthcare APIs

IEEE Transactions on Artificial Intelligence(2025)10.1109/tai.2025.3593470

N/A

0DataRank · unranked

0 citations

Zhenyi Wang, Li Shen, Siyu Luan, Fang Li, Gianfranco Doretto +5 more

SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.26.671804

Top 100%

0DataRank

Top 100%0 citations

Feng-Yu Yeh, Junguk Hur, Jie Zheng, Anna Maria Masci, Guanming Wu +4 more

Enriching Real-world Data with Social Determinants of Health for Health Outcomes and Health Equity: Successes, Challenges, and Opportunities

UNC Libraries(2025)10.17615/qpzf-d940

N/A

0DataRank · unranked

0 citations

Yonghui Wu, Cui Tao, Zhe He, Emily Pfaff, Jiang Bian +3 more

Enriching Real-world Data with Social Determinants of Health for Health Outcomes and Health Equity: Successes, Challenges, and Opportunities

Yearbook of Medical Informatics(2023)10.1055/s-0043-1768732

N/A

0DataRank · unranked

26 citations

Emily Pfaff, Serena Jingchuan Guo, Yi Guo, Yonghui Wu, Cui Tao +3 more

Cui Tao

Indexed papers

Top data-sharing exemplar

Papers