Rick Stevens

Also affiliated with University of Chicago

Computer ScienceBiochemistry, Genetics and Molecular BiologyDecision Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.6Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Papers

Driven by 31 papers — median percentile 86. Top paper: “Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR”.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Analysis of the ARTIC version 3 and version 4 SARS-CoV-2 primers and their impact on the detection of the G142D amino acid substitution in the spike protein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461949

Top 14%

1.5DataRank

Top 14%19 citations

S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla +4 more

The RAST Server: Rapid Annotations using Subsystems Technology

BMC Genomics(2008)10.1186/1471-2164-9-75

N/A

1.4DataRank · unranked

11729 citations

Daniela Bartels, Aaron A. Best, Matthew DeJongh, Terrence Disz, Robert A. Edwards +25 more

BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration

Nucleic Acids Research(2025)10.1093/nar/gkaf1254

Top 46%

0.396DataRank

Top 46%13 citations

Alice R. Wattam, Antonio Aleman, Roshni Bhattacharya, Nicole Bowers, Thomas Brettin +38 more

A cross-study analysis of drug response prediction in cancer cell lines

Briefings in Bioinformatics(2021)10.1093/bib/bbab356

N/A

0DataRank · unranked

99 citations

Jonathan Allen, Prasanna Balaprakash, Thomas Brettin, Cristina García–Cardona, Austin Clyde +19 more

Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein

Microbiology Spectrum(2021)10.1128/spectrum.01803-21

N/A

0DataRank · unranked

66 citations

S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla +4 more

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

Briefings in Bioinformatics(2021)10.1093/bib/bbab313

N/A

0DataRank · unranked

40 citations

Marcus Nguyen, Derya Aytan-Aktug, Thomas Brettin, Emily Dietrich, Ronald W. Kenyon +12 more

Detecting operons in bacterial genomes via visual representation learning

Scientific Reports(2021)10.1038/s41598-021-81169-9

N/A

0DataRank · unranked

17 citations

Fangfang Xia, Rick Stevens, Rida Assaf

Identifying genomic islands with deep neural networks

BMC Genomics(2021)10.1186/s12864-021-07575-5

N/A

0DataRank · unranked

10 citations

Fangfang Xia, Rick Stevens, Rida Assaf

Learning curves for drug response prediction in cancer cell lines

BMC Bioinformatics(2021)10.1186/s12859-021-04163-y

N/A

0DataRank · unranked

4 citations

Thomas Brettin, Yvonne A. Evrard, Yitan Zhu, Hyunseung Yoo, Fangfang Xia +7 more

Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.09.463779

N/A

0DataRank · unranked

6 citations

Defne Gorgun, Zongyi Li, Alexander Brace, Maxim Zvyagin, Heng Ma +29 more

Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation

Frontiers in Bioinformatics(2022)10.3389/fbinf.2022.1020189

N/A

0DataRank · unranked

8 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action

The International Journal of High Performance Computing Applications(2022)10.1177/10943420221113513

N/A

0DataRank · unranked

6 citations

Defne Gorgun, Michael Salim, Zongyi Li, Alexander Brace, Maxim Zvyagin +29 more

Early Detection of Emerging SARS-CoV-2 Variants of Interest for Experimental Evaluation

medRxiv(2022)10.1101/2022.08.08.22278553

N/A

0DataRank · unranked

4 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Drug response prediction in patient-derived xenografts with data augmentation and multimodal deep learning.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.e13572

N/A

0DataRank · unranked

0 citations

Thomas Brettin, Yitan Zhu, Maulik Shukla, Fangfang Xia, Hyunseung Yoo +7 more

Referee report. For: Lessons learned in virulence factor identification and data management from a hackathon on microbial virulence [version 1; peer review: 1 approved with reservations]

Faculty of 1000 Research Ltd(2022)10.5256/f1000research.29206.r123011

N/A

0DataRank · unranked

0 citations

James Davis, Rick Stevens

Deep learning methods for drug response prediction in cancer: Predominant and emerging trends

Frontiers in Medicine(2023)10.3389/fmed.2023.1086097

N/A

0DataRank · unranked

135 citations

Thomas Brettin, Yitan Zhu, Oleksandr Narykov, Austin Clyde, Jamie Overbeek +2 more

Data augmentation and multimodal learning for predicting drug response in patient-derived xenografts from gene expressions and histology images

Frontiers in Medicine(2023)10.3389/fmed.2023.1058919

N/A

0DataRank · unranked

13 citations

Thomas Brettin, Yitan Zhu, James M. Dolezal, Sara Kochanny, Alexander T. Pearson +5 more

Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models

Cancers(2023)10.3390/cancers16010050

N/A

0DataRank · unranked

9 citations

Yitan Zhu, Thomas Brettin, Yvonne A. Evrard, Alexander Partin, Maulik Shukla +6 more

ChemoGraph: Interactive Visual Exploration of the Chemical Space

Computer Graphics Forum(2023)10.1111/cgf.14807

N/A

0DataRank · unranked

8 citations

Austin Clyde, Maoyuan Sun, Arvind Ramanathan, Rick Stevens, Michael E. Papka +1 more

Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery

PubMed(2023)10.1145/3592979.3593400

N/A

0DataRank · unranked

2 citations

Arvind Ramanathan, Valérie Hayot-Sasson, Rick Stevens, Ashka Shah

Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery

arXiv (Cornell University)(2023)10.48550/arxiv.2304.03210

N/A

0DataRank · unranked

0 citations

Arvind Ramanathan, Valérie Hayot-Sasson, Rick Stevens, Ashka Shah

CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson’s Disease Associated Protein

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c01267

N/A

0DataRank · unranked

26 citations

Suzanne Ackloo, C.H. Arrowsmith, Fuqiang Ban, Christopher Barden, Hartmut Beck +91 more

CACHE Challenge #1: targeting the WDR domain of LRRK2, a Parkinson’s Disease associated protein

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.18.603797

N/A

0DataRank · unranked

5 citations

Suzanne Ackloo, C.H. Arrowsmith, Fuqiang Ban, Christopher Barden, Hartmut Beck +90 more

High Performance Binding Affinity Prediction with a Transformer-Based Surrogate Model

(2024)10.1109/ipdpsw63119.2024.00114

N/A

0DataRank · unranked

3 citations

Ozan Gökdemir, Alexander Brace, Arvind Ramanathan, Thomas Brettin, Rick Stevens +2 more

Data Imbalance in Drug Response Prediction - Multi-Objective Optimization Approach in Deep Learning Setting

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.14.585074

N/A

0DataRank · unranked

1 citations

Yitan Zhu, Thomas Brettin, Yvonne A. Evrard, Alexander Partin, Fangfang Xia +5 more

Assessing Reusability of Deep Learning-Based Monotherapy Drug Response Prediction Models Trained with Omics Data

arXiv (Cornell University)(2024)10.48550/arxiv.2409.12215

N/A

0DataRank · unranked

0 citations

Alexander Partin, Thomas Brettin, Nicholas Chia, Oleksandr Narykov, Priyanka Vasanthakumari +19 more

CACHE Challenge #3: Targeting the Nsp3 Macrodomain of SARS-CoV-2

ChemRxiv(2025)10.26434/chemrxiv-2025-d1v7v

N/A

0DataRank · unranked

0 citations

Madhushika Silva, G.J. Correy, Abd Al‐Aziz A. Abu‐Saleh, Suzanne Ackloo, C. Arrowsmith +74 more

Ensemble transfer learning for the prediction of anti-cancer drug response

Scientific Reports(2020)10.1038/s41598-020-74921-0

N/A

0DataRank · unranked

98 citations

Thomas Brettin, Yvonne A. Evrard, Alexander Partin, Fangfang Xia, Maulik Shukla +4 more

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models

Genes(2020)10.3390/genes11091070

N/A

0DataRank · unranked

14 citations

Thomas Brettin, Yvonne A. Evrard, Fangfang Xia, Alexander Partin, Maulik Shukla +4 more

Converting tabular data into images for deep learning with convolutional neural networks

Scientific Reports(2021)10.1038/s41598-021-90923-y

N/A

0DataRank · unranked

198 citations

Thomas Brettin, Fangfang Xia, Alexander Partin, Maulik Shukla, Hyunseung Yoo +4 more

Rick Stevens

Indexed papers

Top data-sharing exemplar

Papers