T. J. Sego

MathematicsEngineeringMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness”.

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008451

N/A

0DataRank · unranked

75 citations

Josua O. Aponte-Serrano, Juliano F. Gianlupi, Samuel Heaps, Kira Breithaupt, Lutz Brusch +6 more

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.064139

N/A

0DataRank · unranked

16 citations

Josua O. Aponte-Serrano, Juliano Ferrari Gianlupi, Samuel Heaps, Kira Breithaupt, Lutz Brusch +6 more

Compartmental Model Suggests Importance of Innate Immune Response to COVID-19 Infection in Rhesus Macaques

Bulletin of Mathematical Biology(2021)10.1007/s11538-021-00909-0

N/A

0DataRank · unranked

18 citations

T. J. Sego, Lauren Gaona, Emmaline Rial, G. Bard Ermentrout, Ericka Mochan

Advancing therapies for viral infections using mechanistic computational models of the dynamic interplay between the virus and host immune response

Current Opinion in Virology(2021)10.1016/j.coviro.2021.07.007

N/A

0DataRank · unranked

15 citations

Juliano F. Gianlupi, Amit Hagar, T. J. Sego, James A. Glazier, Veronika I. Zarnitsyna

Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008874

N/A

0DataRank · unranked

17 citations

Jordan J.A. Weaver, T. J. Sego, James A. Glazier, Jason E. Shoemaker, Josua O. Aponte-Serrano

Generating Agent-Based Multiscale Multicellular Spatiotemporal Models from Ordinary Differential Equations of Biological Systems, with Applications in Viral Infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.28.428647

N/A

0DataRank · unranked

2 citations

Josua O. Aponte-Serrano, Juliano F. Gianlupi, James A. Glazier, T. J. Sego

A Multiscale Multicellular Spatiotemporal Model of Local Influenza Infection and Immune Response

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.20.432089

N/A

0DataRank · unranked

1 citations

Ericka Mochan, G. Bard Ermentrout, James A. Glazier, T. J. Sego

Building digital twins of the human immune system: toward a roadmap

npj Digital Medicine(2022)10.1038/s41746-022-00610-z

N/A

0DataRank · unranked

160 citations

Anna Niarakis, Tomáš Helikar, Gary An, Bruce E. Shapiro, Rahuman S. Malik‐Sheriff +5 more

Multiscale Model of Antiviral Timing, Potency, and Heterogeneity Effects on an Epithelial Tissue Patch Infected by SARS-CoV-2

Viruses(2022)10.3390/v14030605

N/A

0DataRank · unranked

22 citations

Tarunendu Mapder, T. J. Sego, James P. Sluka, Sara K. Quinney, Morgan Craig +3 more

Age-Related Changes to the Immune System Exacerbate the Inflammatory Response to Pandemic H1N1 Infection

Bulletin of Mathematical Biology(2022)10.1007/s11538-022-01045-z

N/A

0DataRank · unranked

2 citations

T. J. Sego, G. Bard Ermentrout, Ericka Mochan

Tissue Forge: Interactive Biological and Biophysics Simulation Environment

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.28.518300

N/A

0DataRank · unranked

3 citations

James P. Sluka, Herbert M Sauro, James A. Glazier, T. J. Sego

Tissue Forge: Interactive biological and biophysics simulation environment

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010768

N/A

0DataRank · unranked

20 citations

James P. Sluka, Herbert M Sauro, James A. Glazier, T. J. Sego

General, open-source vertex modeling in biological applications using Tissue Forge

Scientific Reports(2023)10.1038/s41598-023-45127-x

N/A

0DataRank · unranked

11 citations

Tien Comlekoglu, Shayn M. Peirce, Douglas W. DeSimone, James A. Glazier, T. J. Sego

Mathematical Modeling of the Lethal Synergism of Coinfecting Pathogens in Respiratory Viral Infections: A Review

Microorganisms(2023)10.3390/microorganisms11122974

N/A

0DataRank · unranked

11 citations

T. J. Sego, Ericka Mochan

Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.16.562601

N/A

0DataRank · unranked

1 citations

Bette J. Dzamba, Gustavo G. Pacheco, David Shook, T. J. Sego, James A. Glazier +3 more

Cell Modeling in Jupyter Notebook using CompuCell3D

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7600786

N/A

0DataRank · unranked

0 citations

T. J. Sego, James A. Glazier, Trinity Chung

General, Open-Source Vertex Modeling in Biological Applications Using Tissue Forge

Research Square(2023)10.21203/rs.3.rs-2886960/v1

N/A

0DataRank · unranked

0 citations

Tien Comlekoglu, Shayn M. Peirce, Douglas W. DeSimone, James A. Glazier, T. J. Sego

Immune digital twins for complex human pathologies: applications, limitations, and challenges

npj Systems Biology and Applications(2024)10.1038/s41540-024-00450-5

N/A

0DataRank · unranked

75 citations

Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak +42 more

Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm

Biology Open(2024)10.1242/bio.060615

N/A

0DataRank · unranked

2 citations

Bette J. Dzamba, Gustavo G. Pacheco, David Shook, T. J. Sego, James A. Glazier +3 more

SimService: a lightweight library for building simulation services in Python

Bioinformatics(2024)10.1093/bioinformatics/btae009

N/A

0DataRank · unranked

1 citations

T. J. Sego

Injury-Specific Muscle Regeneration: A Computational Blueprint for Cellular and Cytokine Drivers

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.16.628612

N/A

0DataRank · unranked

1 citations

Tien Comlekoglu, Alexa Petrucciani, T. J. Sego, Shayn M. Peirce, Silvia S. Blemker +1 more

EFECT: A Method to Quantify the Reproducibility of Stochastic Simulations

arXiv (Cornell University)(2024)10.48550/arxiv.2406.16820

N/A

0DataRank · unranked

0 citations

Matthias König, Luís L. Fonseca, Pathirana, Dilan, Bergmann, Frank T., Grecco, Hernán E. +11 more

Modeling Epithelial Morphogenesis and Cell Rearrangement during Zebrafish Epiboly: Tissue Deformation, Cell-Cell Coupling, and the Mechanical Response to Stress

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.12.637977

N/A

0DataRank · unranked

1 citations

T. J. Sego, David M. Umulis, Mary C. Mullins, James A. Glazier, Sharon B. Minsuk