🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jonathan Allen

Lawrence Livermore National Security

ORCID: 0000-0002-4359-8263
Computer ScienceBiochemistry, Genetics and Molecular BiologyMaterials ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors”.

Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors

Journal of Virology(2020)10.1128/jvi.01605-20
N/A
0DataRank · unranked
14 citations

Jackson B. Stuart, William Louie, Anil Singapuri, Ana L. Ramírez, Jennifer Watanabe +18 more

Two sides of a coin: a Zika virus mutation selected in pregnant rhesus macaques promotes fetal infection in mice but at a cost of reduced fitness in nonpregnant macaques and diminished transmissibility by vectors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.11.247411
N/A
0DataRank · unranked
3 citations

Jackson B. Stuart, William Louie, Anil Singapuri, Ana L. Ramírez, Jennifer Watanabe +18 more

A cross-study analysis of drug response prediction in cancer cell lines

Briefings in Bioinformatics(2021)10.1093/bib/bbab356
N/A
0DataRank · unranked
99 citations

Jonathan Allen, Prasanna Balaprakash, Thomas Brettin, Cristina García–Cardona, Austin Clyde +19 more

Machine Learning Models to Predict Inhibition of the Bile Salt Export Pump

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.0c00950
N/A
0DataRank · unranked
0 citations

Claire G. Jeong, Thomas D. Sweitzer, Amanda Minnich, Margaret J. Tse, Brian J. Bennion +5 more

A Computational Pipeline to Identify and Characterize Binding Sites and Interacting Chemotypes in SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.24.485222
N/A
0DataRank · unranked
1 citations

Jeffrey A. Drocco, Adam Zemła, Marisa W. Torres, Mary S. Silva, Jonathan Allen +1 more

Pose Classification using 3D Atomic Structure-Based Neural Networks Applied to Ion Channel-Ligand Docking

ChemRxiv(2022)10.26434/chemrxiv-2022-q8cpx
N/A
0DataRank · unranked
0 citations

Hyo-Jin Kim, Jonathan Allen, Heike Wulff, Heesung Shim

Model Choice Metrics to Optimize Profile-QSAR Performance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.22.504151
N/A
0DataRank · unranked
0 citations

Sookyung Kim, Kevin McLoughlin, Hiranmayi Ranganathan, Da Shi, Jonathan Allen +1 more

Evaluating point-prediction uncertainties in neural networks for protein-ligand binding prediction

Artificial Intelligence Chemistry(2023)10.1016/j.aichem.2023.100004
N/A
0DataRank · unranked
4 citations

Jonathan Allen, Kevin McLoughlin, Da Shi, Brian J. Bennion, Xiaohua Zhang +2 more

A Computational Pipeline to Identify and Characterize Binding Sites and Interacting Chemotypes in SARS-CoV-2

ACS Omega(2023)10.1021/acsomega.3c01621
N/A
0DataRank · unranked
4 citations

Jeffrey A. Drocco, Adam Zemła, Marisa W. Torres, Mary S. Silva, Jonathan Allen +1 more

Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549044
N/A
0DataRank · unranked
0 citations

Jeffrey A. Kimbrel, Jose Manuel Martí, James B. Thissen, Edwin A. Saada, Tracy Weisenberger +6 more

Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies

PLoS ONE(2024)10.1371/journal.pone.0289198
N/A
0DataRank · unranked
0 citations

Jeffrey A. Kimbrel, Jose Manuel Martí, James B. Thissen, Edwin A. Saada, Tracy Weisenberger +6 more

Harnessing Machine Learning for Agnostic Biodetection

Health Security(2025)10.1089/hs.2024.0075
N/A
0DataRank · unranked
0 citations

Camilo Valdes, Nisha Mulakken, Marisa W. Torres, Aram Avila-Herrera, Jeffrey A. Drocco +6 more