Ilya Shmulevich

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 24 papers. Top paper: “The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View”.

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Trends in cancer(2020)10.1016/j.trecan.2020.01.004

N/A

6.0DataRank · unranked

268 citations

Vincent B. Young, Joseph D. Skufca, Fiona Ginty, Traci L. Testerman, Alexander T. Pearson +25 more

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

Cancer Cell(2025)10.1016/j.ccell.2024.12.002

N/A

0.803DataRank · unranked

29 citations

Christopher K. Wong, Christina Yau, Mauro A.A. Castro, Jordan Lee, Brian Karlberg +24 more

A CRISPR/Cas9-Engineered ARID1A -Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation

Cancer Discovery(2021)10.1158/2159-8290.cd-20-1109

N/A

0.771DataRank · unranked

170 citations

Kevin S. Kolahi, Yuhong Du, Chiung-Ying Chang, A. Krokhotin, Ajay Nair +18 more

Mutation Patterns Predict Drug Sensitivity in Acute Myeloid Leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.24.541944

N/A

0.104DataRank · unranked

1 citations

Jin Dai, Sylvia Chien, Timothy J. Martins, Brenda Loera, Quy Nguyen +10 more

Patient-specific cell communication networks associate with disease progression in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.08.430343

N/A

0DataRank · unranked

0 citations

Boris Aguilar, Vésteinn Thórsson, Alexander V. Ratushny, Ilya Shmulevich, David L. Gibbs

SL-Cloud: A Computational Resource to Support Synthetic Lethal Interaction Discovery

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.18.459450

N/A

0DataRank · unranked

0 citations

Guangrong Qin, Taek‐Kyun Kim, Boris Aguilar, Christopher J. Kemp, Nyasha Chambwe +2 more

Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation

Frontiers in Digital Health(2022)10.3389/fdgth.2022.1007784

N/A

0DataRank · unranked

113 citations

Mohamed H. Abdel‐Rahman, Boris Aguilar, Alireza Asadpoure, Robert A. Beckman, Lynn L. Borkon +28 more

A functional module states framework reveals transcriptional states for drug and target prediction

Cell Reports(2022)10.1016/j.celrep.2021.110269

N/A

0DataRank · unranked

8 citations

Theo Knijnenburg, David L. Gibbs, Russell Moser, Raymond J. Monnat, Christopher J. Kemp +2 more

SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery

F1000Research(2022)10.12688/f1000research.110903.1

N/A

0DataRank · unranked

2 citations

Guangrong Qin, Taek‐Kyun Kim, Boris Aguilar, John Phan, William J.R. Longabaugh +5 more

Forum on immune digital twins: a meeting report

arXiv (Cornell University)(2023)10.48550/arxiv.2310.18374

N/A

0DataRank · unranked

1 citations

Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luís L. Fonseca +14 more

Digital twins in medicine

Nature Computational Science(2024)10.1038/s43588-024-00607-6

N/A

0DataRank · unranked

193 citations

Borna Mehrad, Ilya Shmulevich, Natalia A. Trayanova, Reinhard Laubenbacher

Forum on immune digital twins: a meeting report

npj Systems Biology and Applications(2024)10.1038/s41540-024-00345-5

N/A

0DataRank · unranked

24 citations

Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luís L. Fonseca +14 more

Mutation Patterns Predict Drug Sensitivity in Acute Myeloid Leukemia

Clinical Cancer Research(2024)10.1158/1078-0432.ccr-23-1674

N/A

0DataRank · unranked

19 citations

Jin Dai, Sylvia Chien, Timothy J. Martins, Brenda Loera, Quy Nguyen +10 more

Knowledge graphs facilitate prediction of drug response for acute myeloid leukemia

iScience(2024)10.1016/j.isci.2024.110755

N/A

0DataRank · unranked

6 citations

Yue Zhang, Jeffrey Tyner, Christopher J. Kemp, Ilya Shmulevich, Guangrong Qin

Medical digital twins: enabling precision medicine and medical artificial intelligence

The Lancet Digital Health(2025)10.1016/j.landig.2025.02.004

N/A

0DataRank · unranked

97 citations

Stefano Testa, Thomas Barba, Katherine E. Hartmann, Maximilian Schuessler, Alexander Thieme +8 more

Digital twin models for predicting venetoclax and azacitidine-induced neutropenia in patients with acute myeloid leukemia

npj Digital Medicine(2025)10.1038/s41746-025-01978-4

N/A

0DataRank · unranked

2 citations

Jonathan Martinez, Bahar Tercan, Heikki Kuusanmäki, Frank Emmert‐Streib, Jerome G. Chandraseelan +10 more

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

STAR Protocols(2025)10.1016/j.xpro.2025.103681

N/A

0DataRank · unranked

0 citations

Victor H Apolonio, Vinicius S Chagas, Christopher K. Wong, Jordan Lee, Christina Yau +61 more

Protocol for obtaining cancer type and subtype predictions using subSCOPE

STAR Protocols(2025)10.1016/j.xpro.2025.103705

N/A

0DataRank · unranked

0 citations

A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan Lee, Christina Yau +54 more

Cellular heterogeneity and therapeutic response profiling of human IDH+ glioma stem cell cultures

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.29.667532

N/A

0DataRank · unranked

0 citations

Scott R. Kennedy, Brendan Kohrn, Pavlo Lazarchuk, Mario Leutert, Guangrong Qin +9 more

Cellular heterogeneity and therapeutic response profiling of human IDH + glioma stem cell cultures

Scientific Reports(2025)10.1038/s41598-025-33082-8

N/A

0DataRank · unranked

0 citations

Scott R. Kennedy, Brendan F. Kohrn, Pavlo Lazarchuk, Mario Leutert, Guangrong Qin +9 more

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

UNC Libraries(2025)10.17615/jwhb-3p36

N/A

0DataRank · unranked

0 citations

Anab Kemal, Mauro A.A. Castro, Christina Yau, Andrew D. Cherniack, Ina Felau +25 more

A functional module states framework reveals cell states for drug and target prediction

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.394932

N/A

0DataRank · unranked

0 citations

Theo Knijnenburg, David L. Gibbs, Russell Moser, Raymond J. Monnat, Christopher J. Kemp +2 more

Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

UNC Libraries(2020)10.17615/np0d-4636

N/A

0DataRank · unranked

0 citations

Manaswi Gupta, Anouk van Berkel, Jessica Marquard, Tobias Else, Ian T. Fiddes +95 more

Comprehensive molecular characterization of gastric adenocarcinoma

DSpace@MIT (Massachusetts Institute of Technology)(2020)10.17615/eyft-ty56

N/A

0DataRank · unranked

0 citations

Amaro Taylor‐Weiner, Andy Chu, Carrie Sougnez, Nils Weinhold, Sheila M. Reynolds +27 more