Timothy M. Baran

Also affiliated with Instituto de Óptica "Daza de Valdés", University of Rochester

MedicineEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Treatment planning for photodynamic therapy of abscess cavities using patient-specific optical properties measured prior to illumination”.

Treatment planning for photodynamic therapy of abscess cavities using patient-specific optical properties measured prior to illumination

Physics in Medicine and Biology(2024)10.1088/1361-6560/ad2635

N/A

0.398DataRank · unranked

12 citations

Md Nafiz Hannan, Ashwani Kumar Sharma, Timothy M. Baran, Zihao Li

Safety and Feasibility of Photodynamic Therapy for Percutaneous Image-guided Abdominopelvic Abscess Drainage: Phase 1 Trial

Radiology(2024)10.1148/radiol.232667

N/A

0.353DataRank · unranked

9 citations

David Bass, Laurie E. Christensen, Erica Longbine, Maria D. Favella, Thomas H. Foster +2 more

First in human measurements of abscess cavity optical properties and methylene blue uptake prior to photodynamic therapy by in vivo diffuse reflectance spectroscopy

Journal of Biomedical Optics(2024)10.1117/1.jbo.29.2.027002

N/A

0.345DataRank · unranked

9 citations

Ashwani Kumar Sharma, Timothy M. Baran, Md Nafiz Hannan

Photodynamic Therapy of an Abdominal Abscess at the Time of Percutaneous Drainage

CardioVascular and Interventional Radiology(2023)10.1007/s00270-023-03504-z

N/A

0.312DataRank · unranked

7 citations

Ashwani Kumar Sharma, Timothy M. Baran

Treatment planning for photodynamic therapy of abscess cavities using patient-specific optical properties measured prior to illumination

medRxiv(2023)10.1101/2023.10.23.23297420

N/A

0.208DataRank · unranked

3 citations

Md Nafiz Hannan, Ashwani Kumar Sharma, Timothy M. Baran, Zihao Li

Effects of patient-specific treatment planning on eligibility for photodynamic therapy of deep tissue abscess cavities: retrospective Monte Carlo simulation study

Journal of Biomedical Optics(2022)10.1117/1.jbo.27.8.083007

N/A

0DataRank · unranked

19 citations

Lam Nguyen, David A. Bass, Timothy M. Baran, Zihao Li

Enhancing breast ultrasound segmentation through fine-tuning and optimization techniques: Sharp attention UNet

PLoS ONE(2023)10.1371/journal.pone.0289195

N/A

0DataRank · unranked

24 citations

Thomas J. Marini, Timothy M. Baran, Avice M. O’Connell, Kevin J. Parker, Donya Khaledyan

Reactive oxygen species drive foraging decisions in Caenorhabditis elegans

Redox Biology(2023)10.1016/j.redox.2023.102934

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0DataRank · unranked

4 citations

Timothy M. Baran, Andrew P. Wojtovich, Andrew P. Bischer

Methylene blue photodynamic therapy of bacterial species found in human abscesses: planktonic, biofilm, and 3D silicone models

PubMed(2023)10.1117/12.2648350

N/A

0DataRank · unranked

19 citations

Martin S. Pavelka, Timothy M. Baran, H.L.W. Chan

Preliminary measurements of optical properties in human abscess cavities prior to methylene blue photodynamic therapy

PubMed(2023)10.1117/12.2648453

N/A

0DataRank · unranked

7 citations

Ashwani Kumar Sharma, Timothy M. Baran, Md Nafiz Hannan

First in human measurements of abscess cavity optical properties and methylene blue uptake prior to photodynamic therapy by in vivo diffuse reflectance spectroscopy

medRxiv(2023)10.1101/2023.10.16.23297088

N/A

0DataRank · unranked

5 citations

Ashwani Kumar Sharma, Timothy M. Baran, Md Nafiz Hannan

Application of Transfer Learning for Rapid Calibration of Spatially-resolved Diffuse Reflectance Probes for Extraction of Tissue Optical Properties

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.23.563629

N/A

0DataRank · unranked

0 citations

Timothy M. Baran, Md Nafiz Hannan

WATUNet: A Deep Neural Network for Segmentation of Volumetric Sweep Imaging Ultrasound

arXiv (Cornell University)(2023)10.48550/arxiv.2311.10857

N/A

0DataRank · unranked

0 citations

Thomas J. Marini, Avice M. O’Connell, Steven Siyao Meng, Jonah Kan, Galen Brennan +4 more

WATUNet: a deep neural network for segmentation of volumetric sweep imaging ultrasound

Machine Learning Science and Technology(2024)10.1088/2632-2153/ad2e15

N/A

0DataRank · unranked

13 citations

Thomas J. Marini, Avice M. O’Connell, Steven Siyao Meng, Jonah Kan, Galen Brennan +4 more

Application of transfer learning for rapid calibration of spatially resolved diffuse reflectance probes for extraction of tissue optical properties

Journal of Biomedical Optics(2024)10.1117/1.jbo.29.2.027004

N/A

0DataRank · unranked

2 citations

Timothy M. Baran, Md Nafiz Hannan

Photodynamic therapy with methylene blue effectively kills antibiotic resistant bacteria from pediatric patients with perforated appendicitis

Scientific Reports(2025)10.1038/s41598-025-32137-0

N/A

0DataRank · unranked

4 citations

Eric Y. Wang, Darrian S. Hawryluk, Matthew Byrne, Marjorie J. Arca, Derek Wakeman +6 more

Susceptibility of bacterial species commonly found in abdominal abscesses to low‐dose photodynamic therapy: Effects of methylene blue concentration, fluence rate, and fluence

Photochemistry and Photobiology(2025)10.1111/php.14092

N/A

0DataRank · unranked

4 citations

Martin S. Pavelka, Timothy M. Baran, Darrian S. Hawryluk

Feasibility of antimicrobial photodynamic therapy for treatment of breast abscesses: Retrospective Monte Carlo simulation study

Photochemistry and Photobiology(2025)10.1111/php.14085

N/A

0DataRank · unranked

1 citations

Lam Nguyen, Sophia Palumbo, Anna Weiss, Nebojsa Duric, Timothy M. Baran

Susceptibility of bacterial species commonly found in abdominal abscesses to low-dose photodynamic therapy: Effects of methylene blue concentration, fluence rate, and fluence

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2024.12.18.629260

N/A

0DataRank · unranked

1 citations

Martin S. Pavelka, Timothy M. Baran, Darrian S. Hawryluk

Methylene Blue-Photodynamic Therapy Effectively Kills Antibiotic-Resistant Bacteria from Pediatric Patients with Perforated Appendicitis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.29.651230

N/A

0DataRank · unranked

1 citations

E. Wang, Darrian S. Hawryluk, Matthew Byrne, Marjorie J. Arca, Derek Wakeman +6 more

Cognitively supernormal older adults maintain a unique structural connectome that is resistant to Alzheimer’s pathology

NeuroImage Clinical(2020)10.1016/j.nicl.2020.102413

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0DataRank · unranked

10 citations

Timothy M. Baran, Brian Rooks, M. Kerry O’Banion, Mark Mapstone, Zhengwu Zhang +2 more

Intra-Abdominal Photodynamic Therapy in a Rabbit Model of Perforated Appendicitis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.24.678338

N/A

0DataRank · unranked

0 citations

Korry T. Wirth, Matthew Byrne, Benjamin Gersten, E. Wang, Darrian S. Hawryluk +3 more

Longitudinal stability of medial temporal lobe connectivity is associated with tau-related memory decline

eLife(2020)10.7554/elife.62114

N/A

0DataRank · unranked

10 citations

Adam Turnbull, Timothy M. Baran, Feng Lin, Quanjing Chen

Staphylococcus aureus Tolerance and Genomic Response to Photodynamic Inactivation

mSphere(2021)10.1128/msphere.00762-20

N/A

0DataRank · unranked

35 citations

Ann Gill, Constantine G. Haidaris, Thomas H. Foster, Timothy M. Baran, Steven R. Gill +1 more

Increased segregation of structural brain networks underpins enhanced broad cognitive abilities of cognitive training

Human Brain Mapping(2021)10.1002/hbm.25428

N/A

0DataRank · unranked

31 citations

Timothy M. Baran, Adam Turnbull, Zhengwu Zhang, George W. Rebok, Feng Lin +1 more

Brain Small-Worldness Properties and Perceived Fatigue in Mild Cognitive Impairment

The Journals of Gerontology Series A(2021)10.1093/gerona/glab084

N/A

0DataRank · unranked

25 citations

Mia Anthony, Shuyi Chen, Adam Turnbull, Timothy M. Baran, Feng Lin +1 more