🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Deborah Dean

University of California, San Francisco

ORCID: 0000-0002-4490-1746

Also affiliated with University of California System, UCSF Benioff Children's Hospital, Global Brain Health Institute, Global Solutions for Infectious Diseases, University of California, Berkeley

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Development and Evaluation of a Point-of-Care Test in a Low-Resource Setting with High Rates of Chlamydia trachomatis Urogenital Infections in Fiji”.

Development and Evaluation of a Point-of-Care Test in a Low-Resource Setting with High Rates of Chlamydia trachomatis Urogenital Infections in Fiji

Journal of Clinical Microbiology(2021)10.1128/jcm.00182-21
N/A
0DataRank · unranked
24 citations

Sumeetha Swaminathan, Mike Kama, Sophie Goemans, Daniel Faktaufon, Noor Alnabelseya +5 more

Tryptophan Operon Diversity Reveals Evolutionary Trends among Geographically Disparate Chlamydia trachomatis Ocular and Urogenital Strains Affecting Tryptophan Repressor and Synthase Function

mBio(2021)10.1128/mbio.00605-21
N/A
0DataRank · unranked
8 citations

Naraporn Somboonna, Gracie Richards, Maryam Tarazkar, Deborah Dean, Sankhya Bommana

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1154664
N/A
0DataRank · unranked
11 citations

Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D. Read +1 more

Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji

mBio(2023)10.1128/mbio.03063-23
N/A
0DataRank · unranked
6 citations

Yi‐Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli +3 more

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.25.525576
N/A
0DataRank · unranked
3 citations

Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D. Read +1 more

The unique microbial diversity, community composition and networks of Pacific Islander endocervical and vaginal microbiomes in the presence or absence of Chlamydia trachomatis infection using metagenomic shotgun sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.23.546186
N/A
0DataRank · unranked
0 citations

Yi‐Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli +3 more

Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqae187
N/A
0DataRank · unranked
6 citations

Ammar Aziz, Lucile H Zhu, Timothy D. Read, Deborah Dean, Olusola Olagoke

Enhanced Chlamydia trachomatis and Neisseria gonorrhoeae Sexually Transmitted Infections and Associated Risk Factors in Fiji Following the Coronavirus Disease 2019 Pandemic

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf101
N/A
0DataRank · unranked
3 citations

Joelle Brown, Mike Kama, Susan A. Vargo, Rachel Devi, Jenni Singh +2 more

Transcriptional profiling of Chlamydia trachomatis and its host in an ex vivo endocervical primary cell culture system using dual RNA sequencing

Frontiers in Cellular and Infection Microbiology(2025)10.3389/fcimb.2025.1613922
N/A
0DataRank · unranked
1 citations

S Chittaranjan, Deborah Dean, Olusola Olagoke

Putative azithromycin-resistance mutations in Chlamydia trachomatis are globally distributed but arose before azithromycin was discovered

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.10.687758
N/A
0DataRank · unranked
0 citations

Deborah Dean, Timothy D. Read, Parul Sharma