Kristi L. Hoffman

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicineDentistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.8Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

PLoS ONE(2021)10.1371/journal.pone.0244468

Top 12%

1.8DataRank

Top 12%37 citations

Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, Vasanthi Avadhanula +16 more

Papers

Driven by 32 papers — median percentile 88. Top paper: “Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals”.

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

PLoS ONE(2021)10.1371/journal.pone.0244468

Top 12%

1.8DataRank

Top 12%37 citations

Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, Vasanthi Avadhanula +16 more

Gut microbiome modulates response to anti–PD-1 immunotherapy in melanoma patients

Science(2018)10.1126/science.aan4236

N/A

1.3DataRank · unranked

4585 citations

C. N. Spencer, Luigi Nezi, Alexandre Reuben, Miles C. Andrews, Tatiana V. Karpinets +89 more

Identification of distinct stool metabolites in women with endometriosis for non-invasive diagnosis and potential for microbiota-based therapies

Med(2024)10.1016/j.medj.2024.09.006

N/A

0.633DataRank · unranked

19 citations

Goutham Venkata Naga Davuluri, Abu Hena Mostafa Kamal, Cristian Coarfa, Sang Jun Han, Surabi Veeraragavan +7 more

Longitudinal phage–bacteria dynamics in the early life gut microbiome

Nature Microbiology(2025)10.1038/s41564-024-01906-4

N/A

0.494DataRank · unranked

26 citations

Richard E. Lloyd, Kristi L. Hoffman, Daniel P. Smith, Marian Rewers, Sara J. Javornik Cregeen +2 more

Inflammation Mediated by Gut Microbiome Alterations Promotes Lung Cancer Development and an Immunosuppressed Tumor Microenvironment

Cancer Immunology Research(2024)10.1158/2326-6066.cir-24-0469

N/A

0.489DataRank · unranked

25 citations

Yuejiang Liu, Fuduan Peng, Sujuan Yang, Mohamed A. Jamal, Manvi Sharma +30 more

Integrated nasopharyngeal airway metagenome and asthma genetic risk endotyping of severe bronchiolitis in infancy and risk of childhood asthma

European Respiratory Journal(2024)10.1183/13993003.01130-2024

N/A

0.470DataRank · unranked

22 citations

Ryohei Shibata, Kristi L. Hoffman, Juwan Cormier, Jonathan M. Mansbach, Liming Liang +3 more

Pathogenesis of Tobacco-Associated Lung Adenocarcinoma Is Closely Coupled with Changes in the Gut and Lung Microbiomes

International Journal of Molecular Sciences(2022)10.3390/ijms231810930

N/A

0.416DataRank · unranked

15 citations

Zahraa Rahal, Maya Hassane, Warapen Treekitkarnmongkol, Ansam Sinjab, Rhiannon Morris +12 more

The impact of the Th17:Treg axis on the IgA-Biome across the glycemic spectrum

PLoS ONE(2021)10.1371/journal.pone.0258812

N/A

0.312DataRank · unranked

7 citations

Kristi L. Hoffman, Joseph F. Petrosino, Goo Jun, David Aguilar, Craig L. Hanis +3 more

Tryptophan Metabolites And Their Predicted Microbial Sources In Fecal Samples Of Healthy Individuals

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.572622

N/A

0.292DataRank · unranked

6 citations

Kristi L. Hoffman, Philip L. Lorenzi, Lin Tan, Joseph F. Petrosino, Richard A. Gibbs +9 more

Phage-bacteria dynamics during the first years of life revealed by trans-kingdom marker gene analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.28.559994

N/A

0.274DataRank · unranked

5 citations

Richard E. Lloyd, Kristi L. Hoffman, Daniel P. Smith, Marian Rewers, Sara Javornik Cregeen +2 more

Intra- and Inter-host Evolution of Human Norovirus in Healthy Adults

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.30.542907

N/A

0.269DataRank · unranked

5 citations

Sara J. Javornik Cregeen, Anil Surathu, Frederick H. Neill, Donna M. Muzny, HarshaVardhan Doddapaneni +11 more

Comprehensive Wastewater Sequencing Reveals Community and Variant Dynamics of the Collective Human Virome

medRxiv(2023)10.1101/2023.05.03.23289441

N/A

0.241DataRank · unranked

4 citations

Sara Javornik Cregeen, Vasanthi Avadhanula, Ping Zhang, Tulin Ayvaz, Karen Feliz +22 more

Sex differences in beneficial and pathogenic bacteria in People With HIV (PWH) with a history of heavy alcohol drinking

Frontiers in Microbiology(2025)10.3389/fmicb.2025.1632949

N/A

0.165DataRank · unranked

2 citations

Smita Ghare, Vasuk Gautam, Kristi L. Hoffman, Joseph F. Petrosino, Kaku So‐Armah +12 more

C-Reactive Protein Levels Correlate with Measures of Dysglycemia and Gut Microbiome Profiles

Current Microbiology(2023)10.1007/s00284-023-03560-1

N/A

0DataRank · unranked

9 citations

Heather T. Essigmann, Kristi L. Hoffman, Joseph F. Petrosino, Goo Jun, Sharon A. Brown +3 more

Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2022.1095193

N/A

0DataRank · unranked

2 citations

David Henke, Anubama Rajan, Donna M. Muzny, HarshaVardhan Doddapaneni, Vipin K. Menon +9 more

Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection

Journal of Virology(2022)10.1128/jvi.01904-21

N/A

0DataRank · unranked

50 citations

Felipe-Andrés Piedra, Letisha Aideyan, Trevor McBride, Matthew J. Robertson, Hannah L. Johnson +14 more

Dietary Fatty Acid Intake and the Colonic Gut Microbiota in Humans

Nutrients(2022)10.3390/nu14132722

N/A

0DataRank · unranked

52 citations

Luke K. Kennedy, Kristi L. Hoffman, Donna L. White, Fasiha Kanwal, Hashem B. El‐Serag +3 more

Maternal gut microbiota mediate intergenerational effects of high-fat diet on descendant social behavior

Cell Reports(2022)10.1016/j.celrep.2022.111461

N/A

0DataRank · unranked

73 citations

Lisa M. Matz, Ian J. Bolding, Robert Fultz, Kristi L. Hoffman, Antonella Marino +3 more

Examining intra-host genetic variation of RSV by short read high-throughput sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.17.541198

N/A

0DataRank · unranked

0 citations

Felipe-Andrés Piedra, Vasanthi Avadhanula, HarshaVardhan Doddapaneni, Donna M. Muzny, Vipin K. Menon +8 more

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.24.542181

N/A

0DataRank · unranked

0 citations

Chad J. Creighton, Laura Ferlic‐Stark, Richard Sucgang, Yiqun Zhang, Divya Nagaraj +12 more

Functional Genomics of Gastrointestinal Escherichia coli Isolated from Patients with Cancer and Diarrhea

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.543115

N/A

0DataRank · unranked

0 citations

Justin R. Clark, Lily G. Carlin, Ellen E. Vaughan, Anubama Rajan, Adilene Olvera +22 more

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

Research Square(2023)10.21203/rs.3.rs-2978272/v1

N/A

0DataRank · unranked

0 citations

Chad J. Creighton, Laura Ferlic‐Stark, Richard Sucgang, Yiqun Zhang, Divya Nagaraj +12 more

Butyrate-Producing Bacteria and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)

Diabetes(2022)10.2337/db22-0168

N/A

0DataRank · unranked

105 citations

Gautam Ramesh, Martin Wu, Elizabeth T. Jensen, Osa Crago, Alain G. Bertoni +11 more

Decrease in acetyl-CoA pathway utilizing butyrate-producing bacteria is a key pathogenic feature of alcohol-induced functional gut microbial dysbiosis and development of liver disease in mice

Gut Microbes(2021)10.1080/19490976.2021.1946367

N/A

0DataRank · unranked

78 citations

Hridgandh Donde, Smita Ghare, Kendall S. Stocke, Jingwein Zhang, Manicka V. Vadhanam +11 more

Aberrant Gut Microbiome Contributes to Intestinal Oxidative Stress, Barrier Dysfunction, Inflammation and Systemic Autoimmune Responses in MRL/lpr Mice

Frontiers in Immunology(2021)10.3389/fimmu.2021.651191

N/A

0DataRank · unranked

118 citations

Gangduo Wang, Nivedita Banerjee, Yuejin Liang, Xiaotang Du, Paul J. Boor +3 more

Doxycycline for transgene control disrupts gut microbiome diversity without compromising acute neuroinflammatory response

Journal of Neuroinflammation(2024)10.1186/s12974-023-03004-4

N/A

0DataRank · unranked

14 citations

Caleb A. Wood, Zoe Lai, Ella Borgenheimer, Kristi L. Hoffman, Joanna L. Jankowsky +1 more

A complementary metaproteomic approach to interrogate microbiome cultivated from clinical colon biopsies

PROTEOMICS(2024)10.1002/pmic.202400078

N/A

0DataRank · unranked

3 citations

Altai Enkhbayar, Nobel Bhasin, Lakmini Senavirathna, Eva C. Preisner, Kristi L. Hoffman +9 more

Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing

mSphere(2020)10.1128/msphere.00827-19

N/A

0DataRank · unranked

58 citations

Rashmi Sinha, Kristi L. Hoffman, Jun Chen, Xing Hua, Jianxin Shi +4 more

Comparative effects of combustible cigarette versus electronic cigarette exposures on KRAS mutant lung cancer promotion

Neoplasia(2025)10.1016/j.neo.2025.101185

N/A

0DataRank · unranked

1 citations

Maria T. Grimaldo, Nastaran Karimi, Michael J. Clowers, Avantika Krishna, Ranran Wu +22 more

The Roles of Gut Microbiome and Plasma Metabolites in the Associations between ABO Blood Groups and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)

Metabolites(2022)10.3390/metabo12090787

N/A

0DataRank · unranked

5 citations

Kirk J. Grubbs, Alain G. Bertoni, Kristi L. Hoffman, Joseph F. Petrosino, Gautam Ramesh +11 more

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

PLoS ONE(2025)10.1371/journal.pone.0317033

N/A

0DataRank · unranked

0 citations

Chad J. Creighton, Laura Ferlic‐Stark, Divya Nagaraj, Yiqun Zhang, Richard Sucgang +12 more

The Association between Caffeine Intake and the Colonic Mucosa-Associated Gut Microbiota in Humans—A Preliminary Investigation

Nutrients(2023)10.3390/nu15071747

N/A

0DataRank · unranked

36 citations

Kristi L. Hoffman, Anthony Xu, Shawn Gurwara, Donna L. White, Fasiha Kanwal +5 more

Kristi L. Hoffman

Indexed papers

Top data-sharing exemplar

Papers