Jeremy Goecks

MedicineDecision SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.5Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Papers

Driven by 26 papers — median percentile 96. Top paper: “The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution”.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

Nature Genetics(2020)10.1038/s41588-020-0603-8

Top 4%

4.9DataRank

Top 4%178 citations

Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak +34 more

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085

N/A

3.9DataRank · unranked

132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research(2022)10.1093/nar/gkac247

N/A

1.1DataRank · unranked

1384 citations

Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks +89 more

Machine Learning Links T-cell Function and Spatial Localization to Neoadjuvant Immunotherapy and Clinical Outcome in Pancreatic Cancer

Cancer Immunology Research(2024)10.1158/2326-6066.cir-23-0873

N/A

0.718DataRank · unranked

28 citations

Shamilene Sivagnanam, Courtney B. Betts, Konjit Betre, Nell Kirchberger, Benjamin J. Tate +9 more

Multi-omics analysis of serial samples from metastatic TNBC patients on PARP inhibitor monotherapy provide insight into rational PARP inhibitor therapy combinations

medRxiv(2020)10.1101/2020.07.25.20146431

N/A

0DataRank · unranked

3 citations

Allen Li, Allison Creason, Courtney B. Betts, Jamie M. Keck, Brett Johnson +23 more

A new long-read RNA-seq analysis approach identifies and quantifies novel transcripts of very large genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.08.898627

N/A

0DataRank · unranked

2 citations

Jeremy Goecks, Susan M. Knoblach, Karuna Panchapakesan, Carsten G. Bönnemann, Terence A. Partridge +3 more

Adding software to package management systems can increase their citation by 280%

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.385211

N/A

0DataRank · unranked

0 citations

Dave Clements, Björn Grüning, Daniel Blankenberg, Jeremy Goecks, Vahid Jalili

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods(2021)10.1038/s41592-021-01308-y

N/A

0DataRank · unranked

245 citations

Artem Sokolov, Clarence Yapp, Yu‐An Chen, Jeremy L. Muhlich, Joshua M. Hess +22 more

Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome

Cancer Discovery(2021)10.1158/2159-8290.cd-20-0841

N/A

0DataRank · unranked

162 citations

Courtney B. Betts, Shamilene Sivagnanam, Vicente Morales‐Oyarvide, Annacarolina da Silva, Chen Yuan +25 more

Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies

npj Precision Oncology(2021)10.1038/s41698-021-00232-w

N/A

0DataRank · unranked

27 citations

Allen Li, Allison Creason, Courtney B. Betts, Jamie M. Keck, Brett Johnson +23 more

Single-Cell Spatial Proteomics Analyses of Head and Neck Squamous Cell Carcinoma Reveal Tumor Heterogeneity and Immune Architectures Associated with Clinical Outcome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434649

N/A

0DataRank · unranked

6 citations

Shamilene Sivagnanam, Grace L. Banik, Lisa M. Coussens, Jeremy Goecks, Katie E. Blise

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

Nucleic Acids Research(2020)10.1093/nar/gkaa434

N/A

0DataRank · unranked

558 citations

Enis Afgan, Qiang Gu, Dave Clements, Daniel Blankenberg, Jeremy Goecks +3 more

Single-cell spatial architectures associated with clinical outcome in head and neck squamous cell carcinoma

npj Precision Oncology(2022)10.1038/s41698-022-00253-z

N/A

0DataRank · unranked

56 citations

Shamilene Sivagnanam, Grace L. Banik, Lisa M. Coussens, Jeremy Goecks, Katie E. Blise

Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504436

N/A

0DataRank · unranked

8 citations

Cameron Watson, Qiang Gu, Daniel Persson, Luke Sargent, Yu‐An Chen +13 more

Ongoing Replication Stress Response and New Clonal T Cell Development Discriminate Between Liver and Lung Recurrence Sites and Patient Outcomes in Pancreatic Ductal Adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.04.490552

N/A

0DataRank · unranked

3 citations

Carl Pelz, Patrick J. Worth, Sydney Owen, Dove Keith, Ellen M. Langer +19 more

Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.27.557464

N/A

0DataRank · unranked

1 citations

Julian Egger, Cameron Watson, Shamilene Sivagnanam, Koei Chin, Kevin Hawthorne +18 more

Machine learning links T cell function and spatial localization to neoadjuvant immunotherapy and clinical outcome in pancreatic cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.20.563335

N/A

0DataRank · unranked

1 citations

Shamilene Sivagnanam, Courtney B. Betts, Konjit Betre, Nell Kirchberger, Benjamin J. Tate +9 more

Imputing Single-Cell Protein Abundance in Multiplex Tissue Imaging

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.05.570058

N/A

0DataRank · unranked

1 citations

Cameron Watson, Allison Creason, Kaya Keutler, Jeremy Goecks, Raphael Kirchgaessner

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Nucleic Acids Research(2024)10.1093/nar/gkae410

N/A

0DataRank · unranked

865 citations

Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon +95 more

SyntheVAEiser: augmenting traditional machine learning methods with VAE-based gene expression sample generation for improved cancer subtype predictions

Genome biology(2024)10.1186/s13059-024-03431-3

N/A

0DataRank · unranked

4 citations

Raphael Kirchgaessner, Jordan Lee, Matthew Peterkort, Liam Beckman, Jeremy Goecks +2 more

Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer

Nature Cancer(2025)10.1038/s43018-024-00881-3

N/A

0DataRank · unranked

33 citations

Jennifer Eng, Carl Pelz, Kevin Hawthorne, Patrick J. Worth, Shamilene Sivagnanam +33 more

Imputing single-cell protein abundance in multiplex tissue imaging

Nature Communications(2025)10.1038/s41467-025-59788-x

N/A

0DataRank · unranked

1 citations

Cameron Watson, Allison Creason, Kaya Keutler, Jeremy Goecks, Raphael Kirchgaessner

G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007863

N/A

0DataRank · unranked

7 citations

Yating Liu, Wilson Leung, Nathan T. Mortimer, David Lopatto, Jeremy Goecks +2 more

Informatics at the Frontier of Cancer Research

Cancer Research(2025)10.1158/0008-5472.can-24-2829

N/A

0DataRank · unranked

0 citations

Taxiarchis Botsis, Pablo G. Cámara, Lauren Ciotti, Lee Cooper, Jeremy Goecks +19 more

A long-read RNA-seq approach to identify novel transcripts of very large genes

Genome Research(2020)10.1101/gr.259903.119

N/A

0DataRank · unranked

60 citations

Jeremy Goecks, Susan M. Knoblach, Karuna Panchapakesan, Carsten G. Bönnemann, Terence A. Partridge +3 more

Jeremy Goecks

Indexed papers

Top data-sharing exemplar

Papers