Travis S Johnson

Also affiliated with Indiana Biosciences Research Institute, Indiana Cancer Consortium, University School, Indiana University School of Medicine, Indiana University – Purdue University Indianapolis, Indiana University

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 21 papers. Top paper: “Integration of Mouse and Human Single-cell RNA Sequencing Infers Spatial Cell-type Composition in Human Brains”.

Integration of Mouse and Human Single-cell RNA Sequencing Infers Spatial Cell-type Composition in Human Brains

bioRxiv (Cold Spring Harbor Laboratory)10.1101/527499

N/A

0.520DataRank · unranked

3 citations

Zachary B Abrams, Bryan R Helm, Peter Neidecker, Raghu Machiraju, Yan Zhang +3 more

Identification of type 2 diabetes- and obesity-associated human β-cells using deep transfer learning

eLife(2024)10.7554/elife.96713

N/A

0.111DataRank · unranked

1 citations

Rameesha Syed, Olivia Lazaro, Sylvia Robertson, Sean McCabe, Daniela Rodríguez +4 more

Pseudogene-gene functional networks are prognostic of patient survival in breast cancer

BMC Medical Genomics(2020)10.1186/s12920-020-0687-0

N/A

0DataRank · unranked

14 citations

Travis S Johnson, Kun Huang, Yan Zhang, Sasha Smerekanych

Diagnostic Evidence GAuge of Single cells (DEGAS): A flexible deep-transfer learning framework for prioritizing cells in relation to disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.16.142984

N/A

0DataRank · unranked

3 citations

Christina Y. Yu, Zhi Huang, Siwen Xu, Tongxin Wang, Chuanpeng Dong +11 more

Optimal Transport-Based Early Detection of Mild Cognitive Impairment Patients Based on Magnetic Resonance Images

Research Square(2021)10.21203/rs.3.rs-246076/v1

N/A

0DataRank · unranked

0 citations

Travis S Johnson, Wei Shao, Min Zhang, Jie Zhang, Kun Huang +1 more

Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease

Genome Medicine(2022)10.1186/s13073-022-01012-2

N/A

0DataRank · unranked

49 citations

Christina Y. Yu, Zhi Huang, Siwen Xu, Tongxin Wang, Chuanpeng Dong +11 more

Spatial Transcriptomic Analysis Reveals Associations between Genes and Cellular Topology in Breast and Prostate Cancers

Cancers(2022)10.3390/cancers14194856

N/A

0DataRank · unranked

8 citations

Chen Li, Justin L. Couetil, Ze Ye, Kun Huang, Jie Zhang +3 more

TSAFinder: exhaustive tumor-specific antigen detection with RNAseq

Bioinformatics(2022)10.1093/bioinformatics/btac116

N/A

0DataRank · unranked

9 citations

Travis S Johnson, Robert J. Chalkley, Zhi Han, David P. Carbone, Kun Huang +2 more

Optimal transport- and kernel-based early detection of mild cognitive impairment patients based on magnetic resonance and positron emission tomography images

Alzheimer s Research & Therapy(2022)10.1186/s13195-021-00915-3

N/A

0DataRank · unranked

5 citations

Travis S Johnson, Wei Shao, Min Zhang, Jie Zhang, Kun Huang +1 more

AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency

Bioinformatics(2022)10.1093/bioinformatics/btac683

N/A

0DataRank · unranked

1 citations

Travis S Johnson, Yue Wang, Yunlong Liu, Kun Huang, Yijie Wang +1 more

Regulatory T cells targeting a pathogenic MHC class II: Insulin peptide epitope postpone spontaneous autoimmune diabetes

Frontiers in Immunology(2023)10.3389/fimmu.2023.1207108

N/A

0DataRank · unranked

35 citations

Deep Patel, Reni Boyarov, Nansalmaa Amarsaikhan, Joseph Ray Cepeda, Doreen Eastes +6 more

Enhanced microglial dynamics and a paucity of tau seeding in the amyloid plaque microenvironment contribute to cognitive resilience in Alzheimer’s disease

Acta Neuropathologica(2024)10.1007/s00401-024-02775-1

N/A

0DataRank · unranked

19 citations

Javier Redding‐Ochoa, Yanwen You, Pablo Martínez, Hande Karahan, Enrique Chimal‐Juárez +7 more

Ventromedial hypothalamic nucleus subset stimulates tissue thermogenesis via preoptic area outputs

Molecular Metabolism(2024)10.1016/j.molmet.2024.101951

N/A

0DataRank · unranked

11 citations

Andrew J. Elmendorf, Betty Lorentz, Connor A. Mahler, O Motolese Lazzàro, Britany App +9 more

Corrigendum: Regulatory T cells targeting a pathogenic MHC class II: insulin peptide epitope postpone spontaneous autoimmune diabetes

Frontiers in Immunology(2024)10.3389/fimmu.2024.1391518

N/A

0DataRank · unranked

0 citations

Deep Patel, Reni Boyarov, Nansalmaa Amarsaikhan, Joseph Ray Cepeda, Doreen Eastes +6 more

Gradient boosting reveals spatially diverse cholesterol gene signatures in colon cancer

Frontiers in Genetics(2024)10.3389/fgene.2024.1410353

N/A

0DataRank · unranked

0 citations

Debolina Chatterjee, Justin L. Couetil, Ziyu Liu, Valérie Dorsant‐Ardón, Chao Chen +4 more

Predicting Alzheimer's disease subtypes and understanding their molecular characteristics in living patients with transcriptomic trajectory profiling

Alzheimer s & Dementia(2025)10.1002/alz.14241

N/A

0DataRank · unranked

9 citations

Asha Jacob Jannu, Ziyan Song, Nur Jury, Cristian A. Lasagna‐Reeves, Alzheimer's Disease Neuroimaging Initiative +4 more

Multiple Myeloma Insights from Single-Cell Analysis: Clonal Evolution, the Microenvironment, Therapy Evasion, and Clinical Implications

Cancers(2025)10.3390/cancers17040653

N/A

0DataRank · unranked

8 citations

Jiahui Liu, Madeline Peyton, Olivia Lazaro, Sean McCabe, Xiaoqing Huang +6 more

VDAC1 is a target for pharmacologically induced insulin hypersecretion in β cells

Cell Reports(2025)10.1016/j.celrep.2025.115834

N/A

0DataRank · unranked

5 citations

Andrea D. Ordonez, Derk D. Binns, Karina Rodrigues-dos-Santos, Michael B Kwakye, G C King +14 more

MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images

PubMed(2025)10.1109/cvpr52734.2025.01455

N/A

0DataRank · unranked

5 citations

Debolina Chatterjee, Wentao Huang, Jie Zhang, Alisa Yurovsky, Travis S Johnson +2 more

Identify Alzheimer’s disease subtypes and markers from multi-omic data of human brain and blood with a subspace merging algorithm

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651565

N/A

0DataRank · unranked

0 citations

Xiaoqing Huang, Asha Jacob Jannu, Travis S Johnson, Jie Zhang, Kun Huang +1 more

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing

Scientific Reports(2020)10.1038/s41598-020-74917-w

N/A

0DataRank · unranked

21 citations

Shunian Xiang, Bryan R. Helm, Zachary B. Abrams, Peter Neidecker, Raghu Machiraju +4 more