J.M. Krahn

Also affiliated with National Institute of Environmental Health Sciences, Université Bourgogne Franche-Comté

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “Spontaneous base flipping helps drive Nsp15’s preferences in double stranded RNA substrates”.

Spontaneous base flipping helps drive Nsp15’s preferences in double stranded RNA substrates

Nature Communications(2025)10.1038/s41467-024-55682-0

N/A

0.402DataRank · unranked

7 citations

Kevin John Butay, J.M. Krahn, Isha M. Wilson, Scott A. Gabel, Eugene F. DeRose +7 more

Coordinated DNA polymerization by Polγ and the region of LonP1 regulated proteolysis

Nucleic Acids Research(2024)10.1093/nar/gkae539

N/A

0.394DataRank · unranked

8 citations

Asia J Brannon, J.M. Krahn, Jonathan Bouvette, Jason G. Williams, Mario J. Borgnia +2 more

Molecular Mechanism of Substrate Specificity for Heparan Sulfate 2- O -Sulfotransferase

UNC Libraries(2020)10.17615/d9xr-e616

N/A

0DataRank · unranked

1 citations

Lars C. Pedersen, Wenfang Dou, Juzheng Sheng, Po-Hung Hsieh, Chunhui Liu +4 more

Cryo-EM Structures of the SARS-CoV-2 Endoribonuclease Nsp15

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.11.244863

N/A

0DataRank · unranked

8 citations

Meredith N. Frazier, Lucas Dillard, Jason G. Williams, Seda Kocaman, J.M. Krahn +11 more

Predicting Tumor Response to Drugs based on Gene-Expression Biomarkers of Sensitivity Learned from Cancer Cell Lines

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.180620

N/A

0DataRank · unranked

7 citations

David M. Umbach, J.M. Krahn, Igor Shats, Xiaoling Li, Leping Li +1 more

Predicting Tumor Response to Drugs Based on Gene-expression Biomarkers of Sensitivity Learned From Cancer Cell Lines

Research Square(2020)10.21203/rs.3.rs-51060/v1

N/A

0DataRank · unranked

2 citations

David M. Umbach, J.M. Krahn, Igor Shats, Xiaoling Li, Leping Li +1 more

Cryo-EM structures of the SARS-CoV-2 endoribonuclease Nsp15 reveal insight into nuclease specificity and dynamics

Nature Communications(2021)10.1038/s41467-020-20608-z

N/A

0DataRank · unranked

139 citations

Meredith N. Frazier, Lucas Dillard, Jason G. Williams, Seda Kocaman, J.M. Krahn +11 more

Characterization of SARS2 Nsp15 nuclease activity reveals it's mad about U

Nucleic Acids Research(2021)10.1093/nar/gkab719

N/A

0DataRank · unranked

80 citations

Lucas Dillard, J.M. Krahn, L. Perera, Jason G. Williams, Isha M. Wilson +6 more

Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

BMC Genomics(2021)10.1186/s12864-021-07581-7

N/A

0DataRank · unranked

76 citations

David M. Umbach, J.M. Krahn, Igor Shats, Xiaoling Li, Leping Li +1 more

Deciphering the substrate recognition mechanisms of the heparan sulfate 3- O -sulfotransferase-3

RSC Chemical Biology(2021)10.1039/d1cb00079a

N/A

0DataRank · unranked

17 citations

Andrea M. Kaminski, Yongmei Xu, Vijayakanth Pagadala, J.M. Krahn, Truong Quang Pham +3 more

Structural and Substrate Specificity Analysis of 3-O-Sulfotransferase Isoform 5 to Synthesize Heparan Sulfate

ACS Catalysis(2021)10.1021/acscatal.1c04520

N/A

0DataRank · unranked

14 citations

Andrea M. Kaminski, Zhangjie Wang, Eduardo Stancanelli, Yongmei Xu, Vijayakanth Pagadala +6 more

GADGETS: a genetic algorithm for detecting epistasis using nuclear families

Bioinformatics(2021)10.1093/bioinformatics/btab766

N/A

0DataRank · unranked

2 citations

Min Shi, J.M. Krahn, Alison Wise, Yuanyuan Li, Leping Li +3 more

Characterization of SARS2 Nsp15 Nuclease Activity Reveals it’s Mad About U

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.01.446181

N/A

0DataRank · unranked

5 citations

Lucas Dillard, J.M. Krahn, L. Perera, Jason G. Williams, Isha M. Wilson +6 more

Erratum to: GADGETS: a genetic algorithm for detecting epistasis using nuclear families

Bioinformatics(2021)10.1093/bioinformatics/btab833

N/A

0DataRank · unranked

2 citations

Min Shi, J.M. Krahn, Alison Wise, Yuanyuan Li, Leping Li +3 more

Flipped over U: structural basis for dsRNA cleavage by the SARS-CoV-2 endoribonuclease

Nucleic Acids Research(2022)10.1093/nar/gkac589

N/A

0DataRank · unranked

53 citations

Isha M. Wilson, J.M. Krahn, Kevin John Butay, Lucas Dillard, Mario J. Borgnia +2 more

Structural insight and characterization of human Twinkle helicase in mitochondrial disease

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2207459119

N/A

0DataRank · unranked

23 citations

Jonathan Bouvette, L. Perera, Matthew J. Longley, J.M. Krahn, Jason G. Williams +4 more

Cryo-EM reveals the architecture of the PELP1-WDR18 molecular scaffold

Nature Communications(2022)10.1038/s41467-022-34610-0

N/A

0DataRank · unranked

18 citations

Fleur L. Chapus, Elizabeth Viverette, Jason G. Williams, Leesa J. Deterding, J.M. Krahn +5 more

Mechanism by which T7 bacteriophage protein Gp1.2 inhibits Escherichia coli dGTPase

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2123092119

N/A

0DataRank · unranked

7 citations

Deepa Singh, Cassandra Smith, Allen L. Hsu, Lucas Dillard, J.M. Krahn +5 more

Molecular basis for processing of topoisomerase 1-triggered DNA damage by Apn2/APE2

Cell Reports(2022)10.1016/j.celrep.2022.111448

N/A

0DataRank · unranked

6 citations

Jessica L. Wojtaszek, Denise C. Appel, J.M. Krahn, Bret D. Wallace, Evan Walsh +3 more

Method for the structural analysis of Twinkle mitochondrial DNA helicase by cryo-EM

Methods(2022)10.1016/j.ymeth.2022.06.012

N/A

0DataRank · unranked

3 citations

Jonathan Bouvette, Matthew J. Longley, J.M. Krahn, Mario J. Borgnia, William C. Copeland +1 more

Communication network within the essential AAA-ATPase Rix7 drives ribosome assembly

PNAS Nexus(2022)10.1093/pnasnexus/pgac118

N/A

0DataRank · unranked

2 citations

Yu‐Hua Lo, J.M. Krahn, Mack Sobhany, Venkata P. Dandey, Matthew Petrovich +6 more

Flipped Over U: Structural Basis for dsRNA Cleavage by the SARS-CoV-2 Endoribonuclease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.02.480688

N/A

0DataRank · unranked

6 citations

Isha M. Wilson, J.M. Krahn, Kevin John Butay, Lucas Dillard, Mario J. Borgnia +2 more

XDSGUI: a graphical user interface for XDS, SHELX and ARCIMBOLDO

Journal of Applied Crystallography(2023)10.1107/s1600576723007057

N/A

0DataRank · unranked

56 citations

Josep Triviño, J.M. Krahn, Isabel Usón, Kay Diederichs, W. Brehm

Structural basis for pre-tRNA recognition and processing by the human tRNA splicing endonuclease complex

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-00991-z

N/A

0DataRank · unranked

31 citations

Kevin John Butay, Zachary D. Stewart, J.M. Krahn, L. Perera, Jason G. Williams +6 more

Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2

Molecular Cell(2023)10.1016/j.molcel.2023.09.024

N/A

0DataRank · unranked

14 citations

Oya Bermek, Venkata P. Dandey, Makayla Wood, Elizabeth Viverette, Jason G. Williams +6 more

Targeting the Structural Maturation Pathway of HIV-1 Reverse Transcriptase

Biomolecules(2023)10.3390/biom13111603

N/A

0DataRank · unranked

2 citations

Scott A. Gabel, Eugene F. DeRose, L. Perera, J.M. Krahn, Lars C. Pedersen +2 more

Heparan sulfate selectively inhibits the collagenase activity of cathepsin K

Matrix Biology(2024)10.1016/j.matbio.2024.03.005

N/A

0DataRank · unranked

13 citations

Yin Luo, Huanmeng Hao, J.M. Krahn, Guowei Su, Robert Dutcher +5 more

Heparan sulfate selectively inhibits the collagenase activity of cathepsin K

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574350

N/A

0DataRank · unranked

1 citations

Yin Luo, Huanmeng Hao, J.M. Krahn, Guowei Su, Robert Dutcher +5 more

Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel

Cell Death and Differentiation(2025)10.1038/s41418-025-01476-w

N/A

0DataRank · unranked

8 citations

Juliana da Fonseca Rezende e Mello, Yangyu Wu, Daniel Morris, Ikram Mezghani, Erin Smith +6 more

Ubiquitin stimulated reversal of topoisomerase 2 DNA-protein crosslinks by TDP2

Nucleic Acids Research(2020)10.1093/nar/gkaa318

N/A

0DataRank · unranked

21 citations

C. Denise Appel, Amanda A. Riccio, Logan R Butler, J.M. Krahn, Jenna A Liebermann +3 more

Molecular basis for RNA discrimination by human DNA ligase 1

Nucleic Acids Research(2025)10.1093/nar/gkaf299

N/A

0DataRank · unranked

1 citations

Thomas J. Jurkiw, J.M. Krahn, Neha V Bokil, Suzanne J. Admiraal, Lars C. Pedersen +5 more

The Structural Basis for Nonsteroidal Anti-Inflammatory Drug Inhibition of Human Dihydrofolate Reductase

Journal of Medicinal Chemistry(2020)10.1021/acs.jmedchem.0c00546

N/A

0DataRank · unranked

15 citations

Scott A. Gabel, Lars C. Pedersen, Eugene F. DeRose, J.M. Krahn, Elizabeth E. Howell +2 more