Daniel Herschlag

ORCID: 0000-0002-4685-1973

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Parallel molecular mechanisms for enzyme temperature adaptation”.

Parallel molecular mechanisms for enzyme temperature adaptation

Science(2021)10.1126/science.aay2784

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3.1DataRank · unranked

136 citations

Daniel A. Mokhtari, Eyal Akiva, Filip Yabukarski, David M. Sanchez, Ruibin Liang +5 more

Instrumentation and experimental procedures for robust collection of X-ray diffraction data from protein crystals across physiological temperatures

Journal of Applied Crystallography(2020)10.1107/s1600576720013503

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0DataRank · unranked

34 citations

Daniel Herschlag, Filip Yabukarski, Tzanko Doukov

The structural ensemble of a Holliday junction determined by X-ray scattering interference

Nucleic Acids Research(2020)10.1093/nar/gkaa509

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0DataRank · unranked

23 citations

Xuesong Shi, Steve Bonilla, Steffen M. Sedlak, Jan Lipfert, Daniel Herschlag +1 more

A Robust Method for Collecting X-ray Diffraction Data from Protein Crystals across Physiological Temperatures

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.17.995852

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0DataRank · unranked

5 citations

Daniel Herschlag, Filip Yabukarski, Tzanko Doukov

Revealing enzyme functional architecture via high-throughput microfluidic enzyme kinetics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.383182

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0DataRank · unranked

5 citations

Daniel A. Mokhtari, Fanny Sunden, Mason J. Appel, Eyal Akiva, Scott A. Longwell +4 more

Revealing enzyme functional architecture via high-throughput microfluidic enzyme kinetics

Science(2021)10.1126/science.abf8761

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0DataRank · unranked

241 citations

Daniel A. Mokhtari, Fanny Sunden, Mason J. Appel, Eyal Akiva, Scott A. Longwell +4 more

High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2109085118

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0DataRank · unranked

21 citations

Sarah K. Denny, John H. Shin, Aurora Alvarez‐Buylla, William J. Greenleaf, Daniel Herschlag +1 more

A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4

Research Square(2021)10.21203/rs.3.rs-1041087/v1

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0DataRank · unranked

2 citations

Lauren D. Hagler, Winston R. Becker, Inga Jarmoskaite, Pavanapuresan P. Vaidyanathan, Sarah K. Denny +3 more

uPIC–M: efficient and scalable preparation of clonal single mutant libraries for high-throughput protein biochemistry

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.04.455146

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0DataRank · unranked

1 citations

Scott A. Longwell, Maurizio Morri, Norma Neff, Daniel Herschlag, Polly M. Fordyce +1 more

Ensemble–function relationships to evaluate catalysis in the ketosteroid isomerase oxyanion hole

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.29.461692

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0DataRank · unranked

0 citations

Tzanko Doukov, Margaux M. Pinney, J.T. Biel, James S. Fraser, Daniel Herschlag +1 more

Ensemble-function relationships to dissect mechanisms of enzyme catalysis

Science Advances(2022)10.1126/sciadv.abn7738

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0DataRank · unranked

58 citations

Tzanko Doukov, Margaux M. Pinney, J.T. Biel, James S. Fraser, Daniel Herschlag +1 more

A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4

Nature Communications(2022)10.1038/s41467-022-31968-z

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0DataRank · unranked

19 citations

Lauren D. Hagler, Winston R. Becker, Inga Jarmoskaite, Pavanapuresan P. Vaidyanathan, Sarah K. Denny +3 more

RNA conformational propensities determine cellular activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.05.519207

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0DataRank · unranked

3 citations

Rohit Roy, Ainan Geng, Laura R. Ganser, Akanksha Manghrani, Bryan R. Cullen +4 more

High-throughput enzymology reveals mutations throughout a phosphatase that decouple catalysis and transition state analog affinity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.07.515533

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0DataRank · unranked

2 citations

Daniel A. Mokhtari, Siyuan Du, Tzanko Doukov, Fanny Sunden, Polly M. Fordyce +2 more

Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.15.518780

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0DataRank · unranked

0 citations

Steve Bonilla, Sarah K. Denny, William J. Greenleaf, Daniel Herschlag, John H. Shin

RNA conformational propensities determine cellular activity

Nature(2023)10.1038/s41586-023-06080-x

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0DataRank · unranked

60 citations

Rohit Roy, Ainan Geng, Laura R. Ganser, Akanksha Manghrani, Bryan R. Cullen +4 more

Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data

Methods in enzymology on CD-ROM/Methods in enzymology(2023)10.1016/bs.mie.2023.06.009

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0DataRank · unranked

21 citations

Stephanie A. Wankowicz, Filip Yabukarski, Tzanko Doukov, Daniel Herschlag, James S. Fraser +1 more

Decoupling of catalysis and transition state analog binding from mutations throughout a phosphatase revealed by high-throughput enzymology

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2219074120

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0DataRank · unranked

17 citations

Daniel A. Mokhtari, Siyuan Du, Tzanko Doukov, Fanny Sunden, Jordan A. Cook +3 more

Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures

Acta Crystallographica Section D Structural Biology(2023)10.1107/s205979832300089x

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0DataRank · unranked

12 citations

Daniel Herschlag, Filip Yabukarski, Tzanko Doukov

Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220485120

N/A

0DataRank · unranked

9 citations

Steve Bonilla, Sarah K. Denny, William J. Greenleaf, Daniel Herschlag, John H. Shin

Refinement of Multiconformer Ensemble Models from Multi-temperature X-ray Diffraction Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.05.539620

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0DataRank · unranked

7 citations

Stephanie A. Wankowicz, Filip Yabukarski, Tzanko Doukov, Daniel Herschlag, James S. Fraser +1 more

SEISMICgraph: a web-based tool for RNA structure data visualization

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.26.615187

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0DataRank · unranked

0 citations

Grant Yang, Yves J. Martin des Taillades, Casper L’Esperance-Kerckhoff, Scott Grote, Matthew F. Allan +4 more

Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs

RNA(2024)10.1261/rna.080039.124

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0DataRank · unranked

0 citations

Lena M. Cuevas, Rohit Roy, Steve Bonilla, Hashim M. Al‐Hashimi, William J. Greenleaf +2 more

SEISMICgraph: a web-based tool for RNA structure data visualization

Nucleic Acids Research(2025)10.1093/nar/gkaf701

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0DataRank · unranked

1 citations

Grant Yang, Yves J. Martin des Taillades, Casper L’Esperance-Kerckhoff, Scott Grote, Matthew F. Allan +4 more

How to measure and evaluate binding affinities

eLife(2020)10.7554/elife.57264

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0DataRank · unranked

549 citations

Ishraq AlSadhan, Pavanapuresan P. Vaidyanathan, Daniel Herschlag, Inga Jarmoskaite

Quantifying protein unfolding kinetics with a high-throughput microfluidic platform

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.15.633299

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0DataRank · unranked

2 citations

Fanny Sunden, Daniel Herschlag, Polly M. Fordyce, Beatriz Atsavapranee