Jennifer E. Phillips‐Cremins

Also affiliated with New York Stem Cell Foundation, California University of Pennsylvania, Institute of Human Genetics, Translational Therapeutics (United States), Bioengineering Center, University of Pennsylvania, Philadelphia University

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Cohesin-dependence of neuronal gene expression relates to chromatin loop length”.

Cohesin-dependence of neuronal gene expression relates to chromatin loop length

eLife(2022)10.7554/elife.76539

N/A

3.4DataRank · unranked

128 citations

Felix D. Weiss, Jonathan A. Beagan, Marta S Oliveira, Radina Georgieva, Yi-Fang Wang +11 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions

Cell Genomics(2023)10.1016/j.xgen.2023.100356

N/A

1.0DataRank · unranked

43 citations

Maxwell A. Sherman, Giulio Genovese, Thomas G. Gilgenast, Tushar Kamath, S.J. Burris +95 more

TDP-43 loss induces cryptic polyadenylation in ALS/FTD

Nature Neuroscience(2025)10.1038/s41593-025-02050-w

N/A

0.593DataRank · unranked

23 citations

Anna‐Leigh Brown, Max Z. Y. J. Chien, Dario Dattilo, Puja R. Mehta, Francesca Mattedi +94 more

Post-transcriptional splicing can occur in a slow-moving zone around the gene

eLife(2023)10.7554/elife.91357

N/A

0.475DataRank · unranked

12 citations

Aoife O'Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Autism spectrum disorder–risk genes have convergent effects on transcription and neuronal firing patterns in primary neurons

Genome Research(2025)10.1101/gr.280698.125

N/A

0.165DataRank · unranked

2 citations

Rili Ahmad, Steven W. Su, Abraham J. Waldman, Jennifer E. Phillips‐Cremins, Shuo Zhang +2 more

TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A

Nature(2022)10.1038/s41586-022-04436-3

N/A

0DataRank · unranked

525 citations

Oscar G. Wilkins, Matthew J. Keuss, Sarah E. Hill, Matteo Zanovello, Weaverly Colleen Lee +90 more

Cohesin-mediated loop anchors confine the locations of human replication origins

Nature(2022)10.1038/s41586-022-04803-0

N/A

0DataRank · unranked

131 citations

Peiyao A Zhao, Ashley L. Cook, R. Jordan Barnett, Kyle N. Klein, Dalila Saulebekova +20 more

Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains

Nature Neuroscience(2022)10.1038/s41593-022-01032-6

N/A

0DataRank · unranked

71 citations

Gabriel E. Hoffman, Jaroslav Bendl, Samir Rahman, Pengfei Dong, Will Liao +30 more

3D genome, on repeat: Higher-order folding principles of the heterochromatinized repetitive genome

Cell(2022)10.1016/j.cell.2022.06.052

N/A

0DataRank · unranked

50 citations

Zoltán Simándi, R. Jordan Barnett, Jennifer E. Phillips‐Cremins, Spencer A. Haws

Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice

Nature Communications(2022)10.1038/s41467-021-27571-3

N/A

0DataRank · unranked

36 citations

Bing Xu, Peng Hu, Ying-Tao Zhao, Jonathan A. Beagan, Jonathan H. Nofziger +6 more

Schizophrenia-associated somatic copy number variants from 12,834 cases reveal contribution to risk and recurrent, isoform-specific NRXN1 disruptions

medRxiv(2022)10.1101/2021.12.24.21268385

N/A

0DataRank · unranked

4 citations

Maxwell A. Sherman, Giulio Genovese, Thomas G. Gilgenast, Prashanth Rajarajan, Erin Flaherty +14 more

Remodeling and compaction of the inactive X is regulated by Xist during female B cell activation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512821

N/A

0DataRank · unranked

3 citations

Son C. Nguyen, R. Jordan Barnett, Ashley L. Cook, Han-Seul Ryu, Zachary T. Beethem +4 more

G-quadruplexes associated with R-loops promote CTCF binding

Molecular Cell(2023)10.1016/j.molcel.2023.07.009

N/A

0DataRank · unranked

118 citations

Qingqing Yan, Nathaniel Rell, J. Kenneth Doherty, Skye Jacobson, Sarah Offley +6 more

Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome

Cell(2023)10.1016/j.cell.2023.11.019

N/A

0DataRank · unranked

29 citations

Keerthivasan Raanin Chandradoss, Ravi Boya, Linda Zhou, Ashley L. Cook, Su Chuanbin +15 more

Post-transcriptional splicing can occur in a slow-moving zone around the gene

(2023)10.7554/elife.91357.2

N/A

0DataRank · unranked

7 citations

Aoife O’Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.569731

N/A

0DataRank · unranked

4 citations

Zoltán Simándi, Harshini Chandrashekar, Dominik Paquet, Jennifer E. Phillips‐Cremins, Katelyn R. Titus

Polygenic burden of short tandem repeat expansions promote risk for Alzheimer’s disease

medRxiv(2023)10.1101/2023.11.16.23298623

N/A

0DataRank · unranked

2 citations

Wan‐Ping Lee, Badri N. Vardarajan, Gerard D. Schellenberg, Jennifer E. Phillips‐Cremins, Michael H. Guo

Reviewer #2 (Public Review): Post-transcriptional splicing can occur in a slow-moving zone around the gene

(2023)10.7554/elife.91357.1.sa0

N/A

0DataRank · unranked

0 citations

Aoife O'Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Post-transcriptional splicing can occur in a slow-moving zone around the gene

(2023)10.7554/elife.91357.1

N/A

0DataRank · unranked

0 citations

Aoife O’Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Author Response: Post-transcriptional splicing can occur in a slow-moving zone around the gene

(2023)10.7554/elife.91357.2.sa3

N/A

0DataRank · unranked

0 citations

Aoife O’Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Reviewer #2 (Public Review): Post-transcriptional splicing can occur in a slow-moving zone around the gene

(2023)10.7554/elife.91357.2.sa0

N/A

0DataRank · unranked

0 citations

Aoife O'Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Post-transcriptional splicing can occur in a slow-moving zone around the gene

eLife(2024)10.7554/elife.91357.3

N/A

0DataRank · unranked

14 citations

Aoife O'Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation

Cell Genomics(2024)10.1016/j.xgen.2024.100606

N/A

0DataRank · unranked

12 citations

Zoltán Simándi, Harshini Chandrashekar, Dominik Paquet, Jennifer E. Phillips‐Cremins, Katelyn R. Titus

A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer’s disease mutations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.27.582395

N/A

0DataRank · unranked

9 citations

Zoltán Simándi, Heesun Choi, Han-Seul Ryu, Abraham J. Waldman, Alexandria Nikish +5 more

FISHnet: Detecting chromatin domains in single-cell sequential Oligopaints imaging data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.18.599627

N/A

0DataRank · unranked

0 citations

Kenneth Pham, Harshini Chandrashekar, Jennifer E. Phillips‐Cremins, Rohan Patel

Polygenic burden of short tandem repeat expansions promotes risk for Alzheimer’s disease

Nature Communications(2025)10.1038/s41467-025-56400-0

N/A

0DataRank · unranked

13 citations

Wan‐Ping Lee, Badri N. Vardarajan, Gerard D. Schellenberg, Jennifer E. Phillips‐Cremins, Michael H. Guo

B cell stimulation changes the structure and higher-order organization of the inactive X chromosome

Cell Reports(2025)10.1016/j.celrep.2025.115351

N/A

0DataRank · unranked

6 citations

Natalie E. Toothacre, Robin H. van der Weide, Claudia D. Lovell, Son C. Nguyen, R. Jordan Barnett +9 more

Learning induces persistent chromatin loops underlying robust gene expression during memory recall

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.30.678146

N/A

0DataRank · unranked

1 citations

Keerthivasan Raanin Chandradoss, Bradley Lukasak, Alekh Paranjapye, Abraham J. Waldman, Kenneth Pham +8 more

Common tandem repeat variants associated with glaucoma risk in individuals of African ancestry

medRxiv(2025)10.1101/2025.02.19.25322489

N/A

0DataRank · unranked

0 citations

Roy Lee, Isabel Di Rosa, Rebecca Salowe, Fangming Jin, Yuki Bradford +5 more

Persistent chromatin alterations and gene expression reprogramming follow widespread DNA damage in glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.18.660431

N/A

0DataRank · unranked

0 citations

Keerthivasan Raanin Chandradoss, Catherine Do, Ravesanker Ezhilarasan, Theodore Sakellaropoulos, Jerome M. Karp +8 more

3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data

Genome biology(2020)10.1186/s13059-020-02061-9

N/A

0DataRank · unranked

20 citations

Thomas G. Gilgenast, Jennifer E. Phillips‐Cremins, Lindsey R. Fernandez

Persistent chromatin loops shape gene expression plasticity upon stimulation and restimulation of human neurons

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.30.679661

N/A

0DataRank · unranked

0 citations

Kenneth Pham, Katelyn R. Titus, Alexandria Nikish, Constin Liu, Han-Seul Ryu +7 more

Post-transcriptional splicing can occur in a slow-moving zone around the gene

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.06.028092

N/A

0DataRank · unranked

21 citations

Aoife O’Farrell, Ian Dardani, Margaret C. Dunagin, Chris Coté, Yihan Wan +13 more

An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients

iScience(2021)10.1016/j.isci.2021.103221

N/A

0DataRank · unranked

51 citations

Justin Kwan, Dhruv Sareen, James R. Broach, Zachary Simmons, Ximena Arcila-Londono +92 more

Cohesin-mediated loop anchors confine the location of human replication origins

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.05.425437

N/A

0DataRank · unranked

11 citations

Peiyao A Zhao, Kyle N. Klein, Chunmin Ge, Linda Zhou, Takayo Sasaki +7 more

Reliance of neuronal gene expression on cohesin scales with chromatin loop length

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.24.432639

N/A

0DataRank · unranked

7 citations

Felix D. Weiss, Jonathan A. Beagan, M. S. Oliveira, Yi-Fang Wang, Thomas Carroll +10 more

Acetylated Chromatin Domains Link Chromosomal Organization to Cell- and Circuit-level Dysfunction in Schizophrenia and Bipolar Disorder

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.02.446728

N/A

0DataRank · unranked

2 citations

Gabriel E. Hoffman, Jaroslav Bendl, Samir Rahman, Pengfei Dong, Will Liao +28 more