David A. Quigley

Also affiliated with UCSF Helen Diller Family Comprehensive Cancer Center

MedicineImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 27 papers. Top paper: “Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2”.

Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2

Cancer Research(2022)10.1158/0008-5472.can-21-4335

N/A

0.884DataRank · unranked

28 citations

Huadong Chen, Yagmur U. Doruk, Tess Williamson, Benjamin J. Polacco, Andrew S. McNeal +13 more

Autoantibody Landscape in Patients with Advanced Prostate Cancer

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-1966

N/A

0DataRank · unranked

20 citations

Winston Haynes, Rebecca Waitz, Kathy Kamath, Agustin Vega-Crespo, Raunak Shrestha +26 more

Copy Number Loss of 17q22 Is Associated with Enzalutamide Resistance and Poor Prognosis in Metastatic Castration-Resistant Prostate Cancer

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-19-2303

N/A

0DataRank · unranked

13 citations

Duanchen Sun, Eric Lu, Joshua A. Urrutia, Robert E. Reiter, Matthew B. Rettig +17 more

Autoantibody landscape of advanced prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.02.074575

N/A

0DataRank · unranked

0 citations

Winston Haynes, Rebecca Waitz, Kathy Kamath, Agustin Vega-Crespo, Raunak Shrestha +25 more

CRISPRi screens reveal a DNA methylation-mediated 3D genome dependent causal mechanism in prostate cancer

Nature Communications(2021)10.1038/s41467-021-21867-0

N/A

0DataRank · unranked

66 citations

Fraser Soares, Ji‐Han Xia, Yue Yang, Jing Li, Haiyang Guo +27 more

5-hydroxymethylcytosine as a liquid biopsy biomarker in mCRPC.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.6_suppl.148

N/A

0DataRank · unranked

3 citations

Shuang G. Zhao, Eric J. Small, Yuhong Ning, Corinne Maurice‐Dror, Adam Foye +15 more

The 5-Hydroxymethylcytosine Landscape of Prostate Cancer

Cancer Research(2022)10.1158/0008-5472.can-22-1123

N/A

0DataRank · unranked

67 citations

Shuang G. Zhao, Samuel Levy, Meng Zhang, Yuhong Ning, Raunak Shrestha +58 more

Intrinsic Molecular Subtypes of Metastatic Castration-Resistant Prostate Cancer

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-2567

N/A

0DataRank · unranked

26 citations

Nicholas R. Rydzewski, Meng Zhang, Arian Lundberg, Matthew L. Bootsma, Kyle T. Helzer +7 more

Reversible epigenetic alterations mediate PSMA expression heterogeneity in advanced metastatic prostate cancer

JCI Insight(2023)10.1172/jci.insight.162907

N/A

0DataRank · unranked

82 citations

Radhika A. Patel, Ilsa M. Coleman, Martine P. Roudier, Ailin Zhang, Pallabi Mustafi +20 more

Fragmentomic analysis of circulating tumor DNA-targeted cancer panels

Annals of Oncology(2023)10.1016/j.annonc.2023.06.001

N/A

0DataRank · unranked

67 citations

Marina N. Sharifi, Jamie M. Sperger, Yue Shi, Matti Annala, Matthew L. Bootsma +29 more

AARDVARK: an automated reversion detector for variants affecting resistance kinetics

Bioinformatics(2023)10.1093/bioinformatics/btad509

N/A

0DataRank · unranked

3 citations

Joaquín Magaña, David A. Quigley, Thaidy Moreno-Rodriguez

Gene networks reveal stem-cell state convergence during preneoplasia and progression to malignancy in multistage skin carcinogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539863

N/A

0DataRank · unranked

2 citations

Eve Kandyba, Kyle Halliwill, Reyno Delrosario, Matvei Koroshkin, Hani Goodarzi +8 more

Data from Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2

(2023)10.1158/0008-5472.c.6513989

N/A

0DataRank · unranked

0 citations

Huadong Chen, Yagmur U. Doruk, Tess Williamson, Benjamin J. Polacco, Andrew S. McNeal +13 more

Androgen Receptor Inhibition Increases MHC Class I Expression and Improves Immune Response in Prostate Cancer

Cancer Discovery(2024)10.1158/2159-8290.cd-24-0559

N/A

0DataRank · unranked

46 citations

Fanny Polesso, Julie N. Graff, Jessica E. Hawley, Alexis K. Smith, Arian Lundberg +35 more

Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer

Nature Genetics(2024)10.1038/s41588-024-01826-3

N/A

0DataRank · unranked

38 citations

Matthew L. Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg +41 more

An Atlas of Accessible Chromatin in Advanced Prostate Cancer Reveals the Epigenetic Evolution during Tumor Progression

Cancer Research(2024)10.1158/0008-5472.can-24-0890

N/A

0DataRank · unranked

27 citations

Lisa N. Chesner, Meng Zhang, Stanley Zhou, Adam Foye, Arian Lundberg +13 more

Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression

Nature Cell Biology(2024)10.1038/s41556-024-01438-3

N/A

0DataRank · unranked

18 citations

Martin Sjöström, Xiekui Cui, Adam Foye, Kyle Kai‐How Farh, Raunak Shrestha +12 more

Single cell-transcriptomic analysis informs the lncRNA landscape in metastatic castration resistant prostate cancer

npj Genomic Medicine(2024)10.1038/s41525-024-00401-3

N/A

0DataRank · unranked

10 citations

Ha X. Dang, Meng Zhang, David A. Quigley, Felix Y. Feng, Christopher A. Maher +1 more

A prostate cancer gastrointestinal transcriptional phenotype may be associated with diminished response to AR-targeted therapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.02.595931

N/A

0DataRank · unranked

0 citations

Meng Zhang, Marina N. Sharifi, Thaidy Moreno-Rodriguez, Eric Feng, Nicholas R. Rydzewski +9 more

Intraindividual epigenetic heterogeneity underlying phenotypic subtypes of advanced prostate cancer

Nature Communications(2025)10.1038/s41467-025-60654-z

N/A

0DataRank · unranked

9 citations

Sheng-Yu Ku, Varadha Balaji Venkadakrishnan, Martin Bakht, Michael Sigouros, Joanna Chan +18 more

Genome-scale CRISPR screens identify PTGES3 as a direct modulator of androgen receptor function in advanced prostate cancer

Nature Genetics(2025)10.1038/s41588-025-02388-8

N/A

0DataRank · unranked

6 citations

James E. Melnyk, Becky Xu Hua Fu, Raunak Shrestha, Meng Zhang, Martin Sjöström +34 more

PROX1 is an early driver of lineage plasticity in prostate cancer

Journal of Clinical Investigation(2025)10.1172/jci187490

N/A

0DataRank · unranked

9 citations

Mingchen Shi, Anbarasu Kumaraswamy, Dong Lin, Dhruv Khokhani, Yong Wang +41 more

Exploitable mechanisms of antibody and CAR mediated macrophage cytotoxicity

Nature Communications(2025)10.1038/s41467-025-60745-x

N/A

0DataRank · unranked

4 citations

Meng Zhang, Tatyanah Farsh, Haolong Li, Audrey Kishishita, Abhilash Barpanda +22 more

Adverse prognosis gene expression patterns in metastatic castration‐resistant prostate cancer

Molecular Oncology(2025)10.1002/1878-0261.70001

N/A

0DataRank · unranked

4 citations

Eric Feng, Nicholas R. Rydzewski, Amy K. Taylor, Jamie M. Sperger, Yue Shi +22 more

Identifying prognostic targets in metastatic prostate cancer beyond AR

FEBS Open Bio(2025)10.1002/2211-5463.70059

N/A

0DataRank · unranked

1 citations

Eric Feng, Tracy J. Berg, Isabella Nguyen, Lilac Nguyen, William Chen +9 more

Diverse AR Gene Rearrangements Mediate Resistance to Androgen Receptor Inhibitors in Metastatic Prostate Cancer

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-19-3023

N/A

0DataRank · unranked

86 citations

Rendong Yang, Christine Henzler, Yeung Ho, Courtney N. Passow, Benjamin Auch +14 more

Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer

npj Precision Oncology(2025)10.1038/s41698-025-01002-8

N/A

0DataRank · unranked

1 citations

Ya‐Mei Hu, Joel A. Yates, Chao Zhang, Eva S. Rodansky, Dhruv Khokhani +26 more