🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fostering Data Sharing

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Authors
Alexey Kolesnikov

Alexey Kolesnikov

Peoples' Friendship University of Russia

ORCID: 0000-0002-4761-4072

Also affiliated with Moscow State University of Civil Engineering

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.7Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 14 papers — median percentile 70. Top paper: “A draft human pangenome reference”.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380741

Top 11%

2.0DataRank

Top 11%67 citations

Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna +68 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

Cell Genomics(2025)10.1016/j.xgen.2025.101104

Top 65%

0.208DataRank

Top 65%3 citations

Adetola A. Abdulkadir, Megan H. Cleveland, Jennifer McDaniel, David Jáspez, Luis Alberto Rubio-Rodríguez +33 more

Local read haplotagging enables accurate long-read small variant calling

Nature Communications(2024)10.1038/s41467-024-50079-5

N/A

0DataRank · unranked

20 citations

Daniel E. Cook, Maria Nattestad, Lucas Brambrink, Brandy McNulty, John E. Gorzynski +9 more

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads

medRxiv(2024)10.1101/2024.03.22.24304756

N/A

0DataRank · unranked

21 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +33 more

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.16.608331

N/A

0DataRank · unranked

19 citations

Daniel E. Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink, Juan Carlos Mier +26 more

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Nature Biotechnology(2025)10.1038/s41587-025-02618-8

N/A

0DataRank · unranked

28 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +36 more

Highly accurate assembly polishing with DeepPolisher

Genome Research(2025)10.1101/gr.280149.124

N/A

0DataRank · unranked

8 citations

Mobin Asri, Lucas Brambrink, Prajna Hebbar, Alexey Kolesnikov, Daniel E. Cook +8 more

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

Nature Methods(2021)10.1038/s41592-021-01299-w

N/A

0DataRank · unranked

332 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +9 more

Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.04.433952

N/A

0DataRank · unranked

32 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +8 more

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01221-5

N/A

0DataRank · unranked

121 citations

John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen +24 more

Local read haplotagging enables accurate long-read small variant calling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556731

N/A

0DataRank · unranked

4 citations

Daniel E. Cook, Maria Nattestad, Brandy McNulty, John E. Gorzynski, Sneha D. Goenka +8 more